Scaffold Ga0214917_10006047

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10006047
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12715
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (89.74%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Associated Families: 17

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007468	Metagenome / Metatranscriptome	350	Y
F015208	Metagenome / Metatranscriptome	256	Y
F019324	Metagenome / Metatranscriptome	230	Y
F045755	Metagenome / Metatranscriptome	152	N
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000604711	F001125	AGGCGG	MGDRANFGFRDRKGDTVYLYGHWAGHNMLENLSNAVSAARPRWNDESYATRICISQMVGEDWGSETGWGISVNQLADNEHKVPVIDWSKKTFTLYEEDLSTVVFSLTIDEFVNKYSRLVM
Ga0214917_1000604713	F001043	N/A	MFRTMSQQDTQGDKMSDYKDGFDDGYKFAREEMMEKLSEIDITDIDTWILDRLCEMIEGGKL
Ga0214917_1000604714	F000311	GAG	MYFELTAPDRLSMEMAYWDAQIIGLDPTALSPLTFNIGTGSIEKVSKIRDKYNLVESYVSDYEPTGYTGR
Ga0214917_1000604718	F005741	AGG	MANRFRIEIYDANKANDVTIYSEQGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDETVVDKFNTNNQLTAKELGFI
Ga0214917_100060472	F000852	AGGAG	MTTKREYLKSQGITVGLRGRFSGAAKVALQEAATKGITFTAEKPTNKAK
Ga0214917_1000604720	F004051	AGGA	MTIDNKVYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDKGERWTTVLQDNLA
Ga0214917_1000604722	F002245	AGG	MKNVMKVPHTIVFEALIDLDKIPANLLPALIALDQKSIEEMCKGATLHAIGMSNVLPLANENNTWAEVTIKGDN
Ga0214917_1000604728	F015208	GGA	MYKITVTYDEATKPYCVLEYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK
Ga0214917_100060473	F000441	AGGAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIISKLISDRMEQVDL
Ga0214917_1000604730	F045755	GAGG	MSEIAGMWICDNCNTLAIVSVLTDTIQITQCECVTKERETK
Ga0214917_1000604731	F097310	GGA	MSKMKELLDEILNCDLCNGKGWVFFGNATEYDVESCECNPNELEVNY
Ga0214917_1000604732	F006744	AGG	MNLDEFKKHVLATREASKAEALSVLSATITTQSNERENLNV
Ga0214917_1000604735	F001562	GGA	MKSQLEKDLEIKESFIDLLNDTYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLEELEN
Ga0214917_100060475	F001019	AGG	MTYEPSLEILEMEYSCSPGGVDTFEVYDKSDIPLSVPIYETENLTEAVLFCYNLGKDFTVRTLAEWNERELAYEASR
Ga0214917_100060477	F007468	AGAAGG	MLTKSSSFIEYMKIHLISLNQDFDGKYNTETKIHIQGQIDATRHLLSVATDIMNSTNERYNNE
Ga0214917_100060478	F019324	GAGG	MLGYSEKDLDEMIYAIQSVLTTVDSNDDPFLHGNLWRAQEFLQGLWAEGYFDHAN
Ga0214917_100060479	F000868	AGGCGG	MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA