Scaffold Ga0222713_10032004

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10032004
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4227
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Gaiavirus → Mycobacterium virus Gaia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006744	Metagenome / Metatranscriptome	365	Y
F026557	Metagenome / Metatranscriptome	197	Y
F048252	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1003200414	F026557	GAG	MINSVMRIDCSECNSTGLIFFGDNHNFDVETCDCDFGKEQDLFFN
Ga0222713_1003200416	F048252	AGAAGG	MMTRKDYVATAEILKYASNKTHPALFSKIVNDFAEMFAKDNP
Ga0222713_100320048	F006744	AGAAGG	MNLDEFKAHVIATRQASKAEALSVLSATINKSETTKEGK