Scaffold Ga0222713_10026874

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10026874
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4713
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F017134	Metagenome / Metatranscriptome	242	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100268741	F020168	GAG	MTDLIGSVIAIILIAFLCTPVVLAVYMWRGAKIDNDHDGKDDVPYRWEKQ
Ga0222713_1002687410	F002598	AGAAGG	MATKLYTIESLLVGKNYNSRNRHFEGEIVSAKPRPEIWYGEKTEAYLIEINTRSLRNKFATVAVKVGE
Ga0222713_1002687413	F029434	AGG	MKKYTFGVWLDIDAEDEDMALSLFDSVVKNPFVSDSYCFEWKEVADEIAI
Ga0222713_1002687414	F000447	AGGAGG	MGYVEIFRLDEEGAGWVDLSEATPKELLDLEIGLFQEGAL
Ga0222713_100268744	F017134	GAGG	MELFIVSCLNYEICGAQETFETESEYEVYGDDYICAECYASEEMEFFETIGWSDADALASAGHGMDEDY
Ga0222713_100268749	F101047	GAG	MSKMKELYTQIFECETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK