Scaffold Ga0194048_10007053

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10007053
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5276
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004051	Metagenome / Metatranscriptome	455	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F050376	Metagenome / Metatranscriptome	145	Y
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100070531	F050376	AGAAGG	MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAK
Ga0194048_1000705313	F020168	GAG	MIDILGSLIGIILIAFLCSPIVLAVYMWTSVKIDNDHDGKEDLPNRWSK
Ga0194048_1000705314	F002245	AGG	MSNLMTVPHTVTFEAIIDLDKIPANLLPAILALDTYSVTKMCKEATLHALTESNLLKIANEFNTWAEITVKAGN
Ga0194048_1000705316	F004051	GAGG	MTIDNHTYEVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPTKETRWTSVSAKALLG
Ga0194048_1000705318	F017829	AGG	MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNANKKKTTAMFLDENTVQFNKNIIDKAKRIEFGN
Ga0194048_100070532	F000447	AGGAGG	MGYVEIFRIDEEGAGWVDLSEATPDELFNIEIGLLNEGAFE
Ga0194048_100070533	F029434	GAG	MKKYTFGVWLDIDAEDEDMALSLFDSVVKHPFVSDSYCFEWKEVADEIAI
Ga0194048_100070534	F001562	GAGG	MKSQFEIDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0194048_100070536	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFYGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATVAVKVGE
Ga0194048_100070537	F097310	GAG	MSKMKELLDEIINCDLCNGKGWLFAGNAIDYDVESCECNPNELEVNY
Ga0194048_100070539	F015208	GGA	MYKITVAYDEQPAHATFSYGDELQAHTEFAKYVDWGFADKFATVNLYTPSGKCYTKLFYREGRRVVIK