NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10000089

Scaffold Ga0213862_10000089


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10000089 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34710
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011087Metagenome295Y
F015870Metagenome251Y
F036716Metagenome / Metatranscriptome169N
F051181Metagenome / Metatranscriptome144N
F072377Metagenome / Metatranscriptome121N
F092048Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000008923F036716N/AMDLERAGESINIEKLKARLQKRFPDYNFDVPAPPDTKCKAPFYCKQNEIKYTDMEGNLYCGYRYKMTDEKNPFTWEWKVCHALLEPVDIQAKHKEDEVELF
Ga0213862_1000008925F051181AGGAMDDLLEQAQENIKKVVDEQQLQTLYVVLQESLDELDQAEHLVKTYKELRDKAIKGLYNVGVSAQSLATTTNLTRQMIHRIVK
Ga0213862_1000008926F092048AGGMIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0213862_1000008929F072377GGAGGMSYVNQIDWNCGCMRMTEFDYRTHKERTVGRSYCNKKNCDRRLQKI
Ga0213862_1000008933F015870AGGAGGMFSIEGLIITIGFIIVLRVAIVGTLNEVRYYRMIREYERLFPEVWK
Ga0213862_1000008942F011087N/AMSDYIKGKQYPNHKPSTTYSSGRVCVHKECQTVISKYNKFKYCNNHKPRSYPRIKGRQAPTDLQEPLQ
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