Scaffold Ga0206126_10002233

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10002233
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21571
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070114	Metagenome / Metatranscriptome	123	Y
F080236	Metagenome / Metatranscriptome	115	N
F090610	Metagenome / Metatranscriptome	108	N
F103186	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_1000223334	F090610	N/A	MHKTWRLYLLDNKSLTEISKLLNVSKNKLKTQYGLK
Ga0206126_1000223340	F070114	N/A	MELHRALENKKLYEIDQSFSEDAWHAFHQADINSQDDFYDFFHEWIDNACIYTSDCESILSGNMEYCFNEHDVYGQPNNVAQAAFACLYDYLYFSPDTVTWAEMEHVLHEADTKN
Ga0206126_1000223342	F080236	N/A	MNNIYDKKFELYLVTKGYDLDTISLNECLKEIKIWKKNTTNA
Ga0206126_1000223345	F103186	N/A	MRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL