NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103186

Metagenome / Metatranscriptome Family F103186

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103186
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 55 residues
Representative Sequence MRFPKTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELLKLNK
Number of Associated Samples 80
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 28.71 %
% of genes from short scaffolds (< 2000 bps) 76.24 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (87.129 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(13.861 % of family members)
Environment Ontology (ENVO) Unclassified
(55.446 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.139 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 79.31%    β-sheet: 0.00%    Coil/Unstructured: 20.69%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF13385Laminin_G_3 3.96
PF00118Cpn60_TCP1 0.99
PF01068DNA_ligase_A_M 0.99
PF00166Cpn10 0.99
PF02867Ribonuc_red_lgC 0.99
PF03692CxxCxxCC 0.99
PF06356DUF1064 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 0.99
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.99
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.99
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.99
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A87.13 %
All OrganismsrootAll Organisms12.87 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000928|OpTDRAFT_10242952Not Available722Open in IMG/M
3300000947|BBAY92_10119237Not Available698Open in IMG/M
3300001348|JGI20154J14316_10190031Not Available512Open in IMG/M
3300003409|JGI26088J50261_1006423Not Available4797Open in IMG/M
3300003427|JGI26084J50262_1097855Not Available603Open in IMG/M
3300004448|Ga0065861_1053957Not Available1633Open in IMG/M
3300004460|Ga0066222_1077692Not Available1691Open in IMG/M
3300005837|Ga0078893_10546176Not Available1403Open in IMG/M
3300005837|Ga0078893_10636791Not Available832Open in IMG/M
3300006025|Ga0075474_10050844Not Available1404Open in IMG/M
3300006027|Ga0075462_10265940Not Available506Open in IMG/M
3300006621|Ga0101441_102662Not Available42009Open in IMG/M
3300006752|Ga0098048_1124159Not Available775Open in IMG/M
3300007539|Ga0099849_1053462All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1676Open in IMG/M
3300007539|Ga0099849_1303406Not Available576Open in IMG/M
3300007647|Ga0102855_1002010All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.5869Open in IMG/M
3300007647|Ga0102855_1002831Not Available4948Open in IMG/M
3300007718|Ga0102852_1059837Not Available728Open in IMG/M
3300007863|Ga0105744_1054840Not Available983Open in IMG/M
3300007863|Ga0105744_1074093Not Available839Open in IMG/M
3300007956|Ga0105741_1147902Not Available576Open in IMG/M
3300007992|Ga0105748_10048000Not Available1649Open in IMG/M
3300008964|Ga0102889_1104010Not Available842Open in IMG/M
3300008999|Ga0102816_1050253Not Available1239Open in IMG/M
3300008999|Ga0102816_1120046Not Available808Open in IMG/M
3300008999|Ga0102816_1176218Not Available666Open in IMG/M
3300009002|Ga0102810_1005250Not Available4698Open in IMG/M
3300009002|Ga0102810_1070851Not Available1101Open in IMG/M
3300009130|Ga0118729_1078503All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1690Open in IMG/M
3300009130|Ga0118729_1106654All Organisms → Viruses → Predicted Viral1349Open in IMG/M
3300009433|Ga0115545_1333902Not Available501Open in IMG/M
3300009434|Ga0115562_1009831Not Available5559Open in IMG/M
3300009440|Ga0115561_1016990Not Available3722Open in IMG/M
3300009495|Ga0115571_1247222Not Available718Open in IMG/M
3300009496|Ga0115570_10489176Not Available514Open in IMG/M
3300009497|Ga0115569_10353773Not Available639Open in IMG/M
3300009608|Ga0115100_10795031Not Available1642Open in IMG/M
3300010296|Ga0129348_1026616Not Available2104Open in IMG/M
3300010297|Ga0129345_1220551Not Available668Open in IMG/M
3300010300|Ga0129351_1234624Not Available704Open in IMG/M
3300013098|Ga0164320_10620847All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.564Open in IMG/M
3300013101|Ga0164313_10096637All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2491Open in IMG/M
3300016791|Ga0182095_1650437Not Available814Open in IMG/M
3300017719|Ga0181390_1064606Not Available1042Open in IMG/M
3300017738|Ga0181428_1069281Not Available823Open in IMG/M
3300017749|Ga0181392_1227365All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.530Open in IMG/M
3300017752|Ga0181400_1022980All Organisms → Viruses → Predicted Viral2049Open in IMG/M
3300017762|Ga0181422_1078571Not Available1042Open in IMG/M
3300017764|Ga0181385_1022806Not Available1998Open in IMG/M
3300017769|Ga0187221_1118631Not Available799Open in IMG/M
3300017771|Ga0181425_1000265Not Available20980Open in IMG/M
3300017771|Ga0181425_1071717Not Available1118Open in IMG/M
3300017776|Ga0181394_1188736Not Available631Open in IMG/M
3300017783|Ga0181379_1079321Not Available1220Open in IMG/M
3300017786|Ga0181424_10200992Not Available844Open in IMG/M
3300017818|Ga0181565_10548852All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.746Open in IMG/M
3300017950|Ga0181607_10090968Not Available1948Open in IMG/M
3300017950|Ga0181607_10175462Not Available1279Open in IMG/M
3300017950|Ga0181607_10321756Not Available863Open in IMG/M
3300017985|Ga0181576_10829338Not Available545Open in IMG/M
3300018041|Ga0181601_10171057Not Available1306Open in IMG/M
3300018980|Ga0192961_10059299Not Available1116Open in IMG/M
3300020173|Ga0181602_10413713Not Available525Open in IMG/M
3300020177|Ga0181596_10103242Not Available1434Open in IMG/M
3300020178|Ga0181599_1076952Not Available1566Open in IMG/M
3300020188|Ga0181605_10362278Not Available587Open in IMG/M
3300020191|Ga0181604_10161811All Organisms → Viruses → Predicted Viral1123Open in IMG/M
3300020191|Ga0181604_10471558Not Available523Open in IMG/M
3300020595|Ga0206126_10002233Not Available21571Open in IMG/M
3300021085|Ga0206677_10000138Not Available63142Open in IMG/M
3300021085|Ga0206677_10286517Not Available664Open in IMG/M
3300021085|Ga0206677_10366681Not Available554Open in IMG/M
3300021185|Ga0206682_10171105Not Available1008Open in IMG/M
3300021368|Ga0213860_10010343Not Available3823Open in IMG/M
(restricted) 3300023109|Ga0233432_10405245Not Available595Open in IMG/M
3300024188|Ga0228602_1023278Not Available868Open in IMG/M
(restricted) 3300024264|Ga0233444_10003639Not Available15175Open in IMG/M
3300024346|Ga0244775_10023891Not Available5506Open in IMG/M
3300024346|Ga0244775_10508493Not Available983Open in IMG/M
3300025620|Ga0209405_1048754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1462Open in IMG/M
3300025620|Ga0209405_1054861Not Available1333Open in IMG/M
3300025626|Ga0209716_1055886All Organisms → Viruses → Predicted Viral1277Open in IMG/M
3300025704|Ga0209602_1197452Not Available601Open in IMG/M
3300025704|Ga0209602_1229493Not Available530Open in IMG/M
3300025860|Ga0209119_1331429Not Available528Open in IMG/M
3300025874|Ga0209533_1248112Not Available716Open in IMG/M
3300027159|Ga0208020_1034737Not Available969Open in IMG/M
3300027367|Ga0208801_1001330Not Available4980Open in IMG/M
3300031519|Ga0307488_10043875Not Available3503Open in IMG/M
3300031519|Ga0307488_10691097Not Available578Open in IMG/M
3300031589|Ga0307996_1000013Not Available59143Open in IMG/M
3300031676|Ga0302136_1176311Not Available644Open in IMG/M
3300031766|Ga0315322_10333315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.1029Open in IMG/M
3300031766|Ga0315322_10733386Not Available618Open in IMG/M
3300031851|Ga0315320_10020126Not Available5315Open in IMG/M
3300031851|Ga0315320_10969959Not Available516Open in IMG/M
3300032277|Ga0316202_10335128Not Available706Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater13.86%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh12.87%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine10.89%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine10.89%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater7.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.96%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water3.96%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water2.97%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.97%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.98%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.98%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.98%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.98%
Ocean WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water1.98%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.99%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.99%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.99%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.99%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300003409Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNAEnvironmentalOpen in IMG/M
3300003427Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006621Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time pointEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007718Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007956Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008791Microbial communities from seawater in eastern North Pacific Ocean - P1 free-living McLaneEnvironmentalOpen in IMG/M
3300008964Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02EnvironmentalOpen in IMG/M
3300008993Marine microbial communities from eastern North Pacific Ocean - P1 free-livingEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300016791Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018980Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782312-ERR1712127)EnvironmentalOpen in IMG/M
3300020173Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041408US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020177Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024188Seawater microbial communities from Monterey Bay, California, United States - 2DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300027159Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)EnvironmentalOpen in IMG/M
3300027367Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031589Marine microbial communities from David Island wharf, Antarctic Ocean - #35EnvironmentalOpen in IMG/M
3300031676Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20mEnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
OpTDRAFT_1024295213300000928Freshwater And MarineMRFPPNFTTENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK*
BBAY92_1011923733300000947Macroalgal SurfaceMKFPKTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELSKLL*
JGI20154J14316_1019003113300001348Pelagic MarineNMKFPKTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELLKLN*
JGI26088J50261_100642313300003409MarineMRFPKTFTKENKITFYTQRKREMENRFIKSMNENKEDLSNKINEEIKICEKELS
JGI26084J50262_109785513300003427MarineMRFPKTFTKENKITFYTQRKREMEKKFIKSINESKEELSNKINEEIKICEKELSKLL*
Ga0065861_105395763300004448MarineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKVEHSNKLKLEIEICEKELLNLNK*
Ga0066222_107769263300004460MarineMRFPKTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKLNKEIEICEKELSKLL*
Ga0078893_1054617663300005837Marine Surface WaterNMRFPKTFTKENKITFYTQRKEEMEKRFIKSMNESKEELSNKIXXXXXXXK*
Ga0078893_1063679123300005837Marine Surface WaterMKFPQTFTKENKITFYTQRKREMEKRFIKSMNEGKEELSNKINEE
Ga0075474_1005084423300006025AqueousMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNEEIKICEKELLKLTK*
Ga0075462_1026594023300006027AqueousQYKFKYIKMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNEEIKICEKELLKLTK*
Ga0101441_102662513300006621Marine Surface WaterMRFPKTFTKENKITFYTQRKEEMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL*
Ga0098048_112415933300006752MarineMKFPQTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELLKLN*
Ga0099849_105346223300007539AqueousMKFPNTFTKENKITFFKQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELSKLL*
Ga0099849_130340613300007539AqueousMNIKIKNMRFPKSFTKENKITFYTQRKREMEKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL*
Ga0102855_100201053300007647EstuarineMRFPNTFTKENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLNKEIEICEKELNKLYTN*
Ga0102855_100283193300007647EstuarineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK*
Ga0102852_105983713300007718EstuarineMKFPQTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKINEE
Ga0105744_105484013300007863Estuary WaterFTKENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLNKEIEICEKELNKLYTN*
Ga0105744_107409333300007863Estuary WaterMKFPQTFTKENKITFYTQRKKEMEKRFIKSMNENKEALSNKINEEIKICEVELLKLN*
Ga0105741_114790223300007956Estuary WaterMRFPNTFTKENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELL
Ga0105748_1004800013300007992Estuary WaterMRFPQTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKLNKEIEICEKELNKLYTN*
Ga0103696_100800343300008791Ocean WaterVYTQRKREMEKQFIKFMNLGKEEHSNKINEEIKICEKELLNLNK*
Ga0102889_110401023300008964EstuarineMRFPQTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKLNKE
Ga0104258_102262653300008993Ocean WaterMKTIEERKREMEKQFIKFMNLGKEEHSNKINEEIKICEKELLNLNK*
Ga0102816_105025333300008999EstuarineMRFPPNFTTENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIKICEVELLNLNK*
Ga0102816_112004623300008999EstuarineMRFPPNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK*
Ga0102816_117621823300008999EstuarineMRFPPNFTKENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIE
Ga0102810_100525013300009002EstuarineENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLNKEIEICEKELNKLYTN*
Ga0102810_107085113300009002EstuarineMRFPPNFTTENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEIC
Ga0118729_107850323300009130MarineMNIKIKIMRFPKSFTKENKITFYTQRKREMEKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL*
Ga0118729_110665413300009130MarineMNIKIKNMRFPKSFTKENKITFYTQRKKEMEKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL*
Ga0115545_133390213300009433Pelagic MarineMRFPKTFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIGICEKELNKLL*
Ga0115562_100983143300009434Pelagic MarineMNIKINIMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIGICEKELNKLL*
Ga0115561_101699063300009440Pelagic MarineMNIKINIMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL*
Ga0115571_124722213300009495Pelagic MarineMRFPKTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL*
Ga0115570_1048917613300009496Pelagic MarineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNN*
Ga0115569_1035377323300009497Pelagic MarineMRFPSNFTTENKITFYTQRKKEMTKKFVKTINEEKDLLSTKLNEEIEICEKEL
Ga0115100_1079503113300009608MarineRFPTNFTNNQKIKFYNQRKREMEKRFIKSMNENKENLSNKINEEIKICEKELLKLQS*
Ga0129348_102661613300010296Freshwater To Marine Saline GradientMKFPTNFTNKQKITFYNQRKREMEKRFIKSMNEGKDLLSNKLNEEIKICEKELLKLTK*
Ga0129345_122055113300010297Freshwater To Marine Saline GradientMKFPNTFTKENKITFFKQRKREMEKRFIKSMNENKEELSNKITKK*
Ga0129351_123462423300010300Freshwater To Marine Saline GradientMKFPPNFTNKQKITFYNQRKREMEKRFIKSMNEGKDLLSNKLNEEIKICEKELLKLTK*
Ga0164320_1062084713300013098Marine SedimentNFYTKRKREMEKKFVKAMNEEKDLLSTKLNEEINICEKELNKLL*
Ga0164313_1009663733300013101Marine SedimentMNIKIKNMRFPKSFTKENKITFYTQRKREMEKKFVKAMNEEKDLLSTKLNEEINICEKELNKLL*
Ga0182095_165043713300016791Salt MarshIKMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNEEIKICEKELLKLTK
Ga0181387_111391613300017709SeawaterITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL
Ga0181387_112627613300017709SeawaterITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELLNLNK
Ga0181390_106460613300017719SeawaterMRFPKTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELLKLNK
Ga0181428_106928123300017738SeawaterMRFPTNFNNNQKIKFYNQRKREMEKRFIKSMNENKENLSNKINEEIKICEKELLKLQS
Ga0181392_122736523300017749SeawaterMRFPKTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKINEEIKICEKELLKLNK
Ga0181400_102298013300017752SeawaterMKFPQTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL
Ga0181422_107857153300017762SeawaterMRFPQTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL
Ga0181385_102280643300017764SeawaterMRFPQTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIIICEKELLNLNK
Ga0187221_111863123300017769SeawaterMRFPQTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELLNLNK
Ga0181425_100026583300017771SeawaterMRFPTNFTNNQKIKFYNQRKREMEKRFIKSMNENKENLSNKINEEIKICEKELLKLQS
Ga0181425_107171713300017771SeawaterMKFPQTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEE
Ga0181394_118873633300017776SeawaterTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL
Ga0181379_107932143300017783SeawaterMRFPPNFTKENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLNKEIEICEKELNKLL
Ga0181424_1020099213300017786SeawaterMRFPKTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKINEEKKICEKELLKLNK
Ga0181565_1054885213300017818Salt MarshMKFPNTFTKENKITFFKQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELSKLL
Ga0181607_1009096843300017950Salt MarshMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNEEIKICEKELLKLTK
Ga0181607_1017546213300017950Salt MarshMKFPKTFTKENKITFYTQRKREMEKKFIKSMNENKEDLSNKINEEIKICEKELLKLN
Ga0181607_1032175613300017950Salt MarshNKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNDEIKICEKELLKLTK
Ga0181576_1082933813300017985Salt MarshMKFPNTFTKENKITFFKQRKKEMEKRFIKSMNENKEELSNKI
Ga0181601_1017105743300018041Salt MarshMRFPKTFTKENKITFYTQRKREMEKRFIESMNESKEELSNKINEEIKICEKELSKLL
Ga0192961_1005929933300018980MarineMKFPQTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELLKLN
Ga0181602_1041371323300020173Salt MarshMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNDEIKICEKELLKLTK
Ga0181596_1010324213300020177Salt MarshMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNDEIK
Ga0181599_107695213300020178Salt MarshFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNKLNEEIKICEKELLKLTK
Ga0181605_1036227813300020188Salt MarshMRFPKTFTKENKITFYTQRKREMEKRFIESMNESKEELSNKINEEIKIC
Ga0181604_1016181133300020191Salt MarshMKFPKTFTKENKITFYTQRKREMEKRFIESMNESKEELSNKINEEIKICEKELSKLL
Ga0181604_1047155813300020191Salt MarshMRFPQTFTKENKITFYNQRKREMEKKFIKSMNDGKDLLSNK
Ga0206126_10002233453300020595SeawaterMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL
Ga0206677_10000138773300021085SeawaterMRFPQTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELLNLNK
Ga0206677_1028651713300021085SeawaterMRFPQTFTKENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0206677_1036668133300021085SeawaterMRFPKTFTKENKITFYTQRKREMEKKFIKSINESKEELSNKINEEIKICEKELSKLL
Ga0206682_1017110543300021185SeawaterMRFPKTFTKENKITFYTQRKREMEKKLIKSINESKEELSNKINEEIKICEKELSKLL
Ga0213860_1001034363300021368SeawaterMKFPQTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELSKLL
(restricted) Ga0233432_1040524513300023109SeawaterMRFPKTFTKENKITFYTQRKREMENRFIKSMNENKEDLSNKINEEIKICEKELSKLL
Ga0228602_102327813300024188SeawaterMRFPTNFTNNQKIKFYNQRKREMEIRFIKSMNENKENLSNKINEEIKICEKELLKLQS
(restricted) Ga0233444_1000363913300024264SeawaterMRFPNTFTKENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLNKEIEICEKELNKLYTN
Ga0244775_10023891133300024346EstuarineMRFPPNFTTENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKL
Ga0244775_1050849323300024346EstuarineMRFPPNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0209405_104875413300025620Pelagic MarineMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKE
Ga0209405_105486153300025620Pelagic MarineSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIGICEKELNKLL
Ga0209716_105588653300025626Pelagic MarineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNN
Ga0209602_119745213300025704Pelagic MarineMRFPKTFTKENKITFYTQRKREMEKRFIKSMNESKEELSNKINEEIKICEKELSKLL
Ga0209602_122949313300025704Pelagic MarineMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIGICEKELNKLL
Ga0209119_133142913300025860Pelagic MarineMRFPKSFTKENKITFYTQRKKEMTNKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL
Ga0209533_124811213300025874Pelagic MarineMKFPKTFTKENKITFYTQRKREMEKRFIKSMNENKEELSNKINEEIKICEKELLKLN
Ga0208020_103473723300027159EstuarineMRFPPNFTTENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0208801_100133073300027367EstuarineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0307488_10043875123300031519Sackhole BrineMRFPQTFTKENKITFYTQRKREMEKQFNKFSKLNKIEHSNKLKKEIEICEKELLKLN
Ga0307488_1069109723300031519Sackhole BrineMRFPSNFTTENKITFYTQRKKEMTKQFNKFSKLNKVEHSNKLKLEIEICEKELLNLNK
Ga0307996_1000013143300031589MarineMRFPNTFTTENKITFYTQRKREMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0302136_117631143300031676MarineKITFYTQRKKEMTKQFNKFSKLNKVEHSNKLKLEIEICEKELLNLNK
Ga0315322_1033331533300031766SeawaterMRFPQTFTKENKITFYTQRKREMEKQFIKFMNLGKEEHSNKINEEIKICEKELLKLNK
Ga0315322_1073338623300031766SeawaterMRFPPNFTKENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0315320_1002012633300031851SeawaterMRFPNTFTKENKITFYTQRKKEMTKQFIKFMNLGKEEHSNKLNKEIEICEKELNKLYTN
Ga0315320_1096995913300031851SeawaterMRFPPNFTKENKITFYTQRKKEMVKQFNKFSKLNKIEHSNKLKKEIEIC
Ga0316202_1033512813300032277Microbial MatMRFPNNFTKENKITFYTQRKKEMTKQFIKFMNAGKEEASNKCNEEIKICEKELSKLL


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