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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009151 Open in IMG/M |
| Scaffold ID | Ga0114962_10007902 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8051 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F004431 | Metagenome / Metatranscriptome | 438 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F012455 | Metagenome / Metatranscriptome | 280 | Y |
| F014142 | Metagenome / Metatranscriptome | 265 | Y |
| F015208 | Metagenome / Metatranscriptome | 256 | Y |
| F029434 | Metagenome / Metatranscriptome | 188 | Y |
| F079977 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114962_1000790210 | F006744 | AGG | MNLDEFKKHVEETRKQSTVEAMSVLSATITTPNKKEAN* |
| Ga0114962_1000790211 | F012455 | GAGG | MEKVKRIQELRRSNAATAIPSKKKYNRKRKYKNKFE* |
| Ga0114962_1000790212 | F015208 | GAGG | MYKITVTYDEQTSPYWSGQYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVER* |
| Ga0114962_1000790216 | F029434 | GGAG | MKKYTFGVWLDIDAENDDQALSIFDNVIKNNFVSDSYCFEWKEVE* |
| Ga0114962_1000790220 | F000684 | AGGA | MTLSGYTYQIGDLFTTSKTGVTGRIASFSPISNKVTRVSLVLANGSRRFAMVKTSK* |
| Ga0114962_1000790224 | F004431 | N/A | MKMKIEYSLWDGATLLGVGFIASSADEMNKTVAELQKVSKNVVAHLRKVEIND* |
| Ga0114962_1000790225 | F014142 | N/A | EPTHPMASSNTKSNSIFRLANGNYISRMAYVHLVASEGLISHRYLTPSESQWVFANRVS* |
| Ga0114962_100079026 | F079977 | AGG | MSKGLFEVLAEWHPDGDFTEEDLWEAIAESEGVDVNEISDRDLTEFI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |