Scaffold Ga0114973_10036456

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10036456
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2951
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F002598	Metagenome / Metatranscriptome	544	Y
F006744	Metagenome / Metatranscriptome	365	Y
F024549	Metagenome / Metatranscriptome	205	Y
F029434	Metagenome / Metatranscriptome	188	Y
F063685	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1003645610	F006744	AGG	MNLDEFKKHVLETRQASKAQALSVLSATITKSTNERENLNG*
Ga0114973_1003645613	F024549	GGA	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFANEFATYNLSLPTGKMYTKNFNRIGLVSQK*
Ga0114973_100364562	F063685	GGA	MTIEIDTYGFMLDTEWAYVALSWQLLITSALLITAYKIYKIKRGK*
Ga0114973_100364565	F029434	AGGAG	MKKYTFGVWLDIDAEDENQALSLFDEVVKKNLFVSDSYCFEWKEVADEIAI*
Ga0114973_100364566	F001562	GAGG	MKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLAEMENE*
Ga0114973_100364568	F002598	AGAAGG	MATKLYTIENLLVGKNYRSNSRHFEGEIISATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE*