NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1006370

Scaffold Ga0114344_1006370


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1006370 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12672
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F016662Metagenome / Metatranscriptome245Y
F027180Metagenome / Metatranscriptome195Y
F027842Metagenome193Y
F043404Metagenome156Y
F047680Metagenome149Y
F061858Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0114344_100637012F061858N/AMKFVHNKIDGTFLIGVTFSNNFNYRTKRKDTTLIFDLGSNSFAFVLRGEY*
Ga0114344_100637022F047680AGGMAKMKDLYGILTEWFPDGNYTEEQLWEAIAESQGMDYAEIADGDLAEWL*
Ga0114344_100637024F027180AGGAGMIVLNLFNKKPVEDTFAKLDRLMSSMATPETYVEYLREREGM*
Ga0114344_100637026F002502N/AMEKIQKMEKIQTPTVGSQFTTAKSGVTGTVQEVIKNATGSLRIRLDVNGQDRWTTVK*
Ga0114344_100637033F043404AGGAMIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMIQIIIRGKK*
Ga0114344_100637035F016662AGGAMTYLVAVTEVVYDEEYLIKEMLATGEYGIHGHPISHEAMVEFVKDTEWQIEHNLFLTKYDIPVSIAIKDEDGTDLFFAKNKIEVK*
Ga0114344_10063705F027842GAGGMFLYNLGDLLIGIAIFSLPALLLELQLLVIGFDFMSANVMIATAGIGLLSAIGAVVIEMVER*

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