Basic Information | |
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Taxon OID | 3300008111 Open in IMG/M |
Scaffold ID | Ga0114344_1006370 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12672 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (74.29%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002502 | Metagenome / Metatranscriptome | 553 | Y |
F016662 | Metagenome / Metatranscriptome | 245 | Y |
F027180 | Metagenome / Metatranscriptome | 195 | Y |
F027842 | Metagenome | 193 | Y |
F043404 | Metagenome | 156 | Y |
F047680 | Metagenome | 149 | Y |
F061858 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114344_100637012 | F061858 | N/A | MKFVHNKIDGTFLIGVTFSNNFNYRTKRKDTTLIFDLGSNSFAFVLRGEY* |
Ga0114344_100637022 | F047680 | AGG | MAKMKDLYGILTEWFPDGNYTEEQLWEAIAESQGMDYAEIADGDLAEWL* |
Ga0114344_100637024 | F027180 | AGGAG | MIVLNLFNKKPVEDTFAKLDRLMSSMATPETYVEYLREREGM* |
Ga0114344_100637026 | F002502 | N/A | MEKIQKMEKIQTPTVGSQFTTAKSGVTGTVQEVIKNATGSLRIRLDVNGQDRWTTVK* |
Ga0114344_100637033 | F043404 | AGGA | MIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMIQIIIRGKK* |
Ga0114344_100637035 | F016662 | AGGA | MTYLVAVTEVVYDEEYLIKEMLATGEYGIHGHPISHEAMVEFVKDTEWQIEHNLFLTKYDIPVSIAIKDEDGTDLFFAKNKIEVK* |
Ga0114344_10063705 | F027842 | GAGG | MFLYNLGDLLIGIAIFSLPALLLELQLLVIGFDFMSANVMIATAGIGLLSAIGAVVIEMVER* |
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