Scaffold Ga0114344_1006370

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1006370
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12672
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F016662	Metagenome / Metatranscriptome	245	Y
F027180	Metagenome / Metatranscriptome	195	Y
F027842	Metagenome	193	Y
F043404	Metagenome	156	Y
F047680	Metagenome	149	Y
F061858	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100637012	F061858	N/A	MKFVHNKIDGTFLIGVTFSNNFNYRTKRKDTTLIFDLGSNSFAFVLRGEY*
Ga0114344_100637022	F047680	AGG	MAKMKDLYGILTEWFPDGNYTEEQLWEAIAESQGMDYAEIADGDLAEWL*
Ga0114344_100637024	F027180	AGGAG	MIVLNLFNKKPVEDTFAKLDRLMSSMATPETYVEYLREREGM*
Ga0114344_100637026	F002502	N/A	MEKIQKMEKIQTPTVGSQFTTAKSGVTGTVQEVIKNATGSLRIRLDVNGQDRWTTVK*
Ga0114344_100637033	F043404	AGGA	MIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMIQIIIRGKK*
Ga0114344_100637035	F016662	AGGA	MTYLVAVTEVVYDEEYLIKEMLATGEYGIHGHPISHEAMVEFVKDTEWQIEHNLFLTKYDIPVSIAIKDEDGTDLFFAKNKIEVK*
Ga0114344_10063705	F027842	GAGG	MFLYNLGDLLIGIAIFSLPALLLELQLLVIGFDFMSANVMIATAGIGLLSAIGAVVIEMVER*