Scaffold Ga0075473_10085625

Overview

Basic Information

• Taxon OID: 3300006875
• Scaffold ID: Ga0075473_10085625
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1242
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F006744	Metagenome / Metatranscriptome	365	Y
F045755	Metagenome / Metatranscriptome	152	N
F101047	Metagenome / Metatranscriptome	102	N
F103145	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075473_100856251	F045755	AGGAG	MSEIAGMWICDNCDTLATVSVATDTIVIQQCECVTNERETNV*
Ga0075473_100856252	F101047	GGA	MGRMKELYTQILECETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK*
Ga0075473_100856253	F006744	AGG	MNLDEFKQHVLATREASKAEALSVLSATITKSTNERENLNG*
Ga0075473_100856255	F002598	AGAAGG	MATKLYTIESLLVGKNYRSNSRHFSGEIVSAEPRPEIWYGENTEAFLIEVNAGGLRNKFATIAVKVGE*
Ga0075473_100856257	F103145	N/A	LSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*