Scaffold Ga0070749_10017701

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10017701
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4540
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012662	Metagenome / Metatranscriptome	278	N
F077238	Metagenome	117	Y
F088553	Metagenome	109	N
F091843	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100177012	F088553	N/A	MKEFEVELSATTYRTFYVTAESAEQAEEMAWDALDEDEEISGAWKDSAKLESVEECRSPNT*
Ga0070749_100177013	F091843	N/A	MSVTEYLTDHNGNRVAFFYYIDSERYRTCPQLVWKCRDYPNFKGTCASKEEAFEAFKAVLKELKRSVPVQTCDKCGLTSPKMEGQSTCPECLTETTTNK*
Ga0070749_100177017	F077238	N/A	MTDNLTDPSKLETLDEPSLQTLIDHYLSVQKRLPDNVRVRDRLIELQQELLNRTTKE*
Ga0070749_100177018	F012662	N/A	MKETLLQPADMIEELMYHILWNEFDGELNPDHKYFTLYVELQKLLDEENKNLNQ*