Scaffold Ga0079301_1005843

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1005843
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4969
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F005177	Metagenome / Metatranscriptome	409	Y
F006744	Metagenome / Metatranscriptome	365	Y
F049621	Metagenome / Metatranscriptome	146	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100584310	F002245	AGG	MSNLIKVPHTITFEAIINLDTIPANLLPRLIALDEKTMTEMCKEATLHALAQSNVLKTANEFNTWAEMTIKEGN*
Ga0079301_100584314	F005177	AGGA	MKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTELVFSNMRRFNGTIRAYVYDNLKKKKTTALLLPMEFIPKKTELTNLVG*
Ga0079301_10058433	F006744	AGG	MNLDEFKQHVIAQREASKAQALSVLSATITKSTNERENLNG*
Ga0079301_10058434	F101047	GGA	MGRMKELYTQILECDTCYGNGWLYYGDENNYDVEACQCNPLSFFQENK*
Ga0079301_10058439	F049621	AGGAG	MAELNYFNALINSVVGDQDQKKAAKEYLAEIDPDIWGQEE*