Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1005843 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4969 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F005177 | Metagenome / Metatranscriptome | 409 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F049621 | Metagenome / Metatranscriptome | 146 | Y |
F101047 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079301_100584310 | F002245 | AGG | MSNLIKVPHTITFEAIINLDTIPANLLPRLIALDEKTMTEMCKEATLHALAQSNVLKTANEFNTWAEMTIKEGN* |
Ga0079301_100584314 | F005177 | AGGA | MKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTELVFSNMRRFNGTIRAYVYDNLKKKKTTALLLPMEFIPKKTELTNLVG* |
Ga0079301_10058433 | F006744 | AGG | MNLDEFKQHVIAQREASKAQALSVLSATITKSTNERENLNG* |
Ga0079301_10058434 | F101047 | GGA | MGRMKELYTQILECDTCYGNGWLYYGDENNYDVEACQCNPLSFFQENK* |
Ga0079301_10058439 | F049621 | AGGAG | MAELNYFNALINSVVGDQDQKKAAKEYLAEIDPDIWGQEE* |
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