Scaffold Ga0073579_1190873

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190873
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86332
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (43.54%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042077	Metagenome	159	Y
F043682	Metagenome	156	Y
F049292	Metagenome	147	Y
F055275	Metagenome / Metatranscriptome	139	Y
F055276	Metagenome	139	Y
F072853	Metagenome	121	Y
F079342	Metagenome	116	Y
F086303	Metagenome	111	Y
F089526	Metagenome	109	Y
F099044	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_1190873110	F055276	N/A	MTPHITNIVRSATVLICALPITVSTATRLNVGTDVARQQLEVSPADQAVTDLKNDLTKACIDYKLGKLDGTVERKAKTALDEAFDGEVLYDRTCAFILG*
Ga0073579_1190873121	F043682	N/A	MTPLIFCSILAGYAITGAVENQPGWMTVNYLDKNQIAEYIVIPMDAYIECYPKHAAGLTAPEK*
Ga0073579_1190873128	F055275	N/A	MEETEITFTMNERSVRALHSAVVFTLEKWAGQGHLDQECLLDIKPALQGCVFEFDFNR*
Ga0073579_1190873129	F079342	N/A	MSVENARRNMARARKELERARIFDTHYRGVKSTTHAEPAEVHGTFVYRGRTYTK*
Ga0073579_1190873132	F049292	N/A	MIGYVIAGPLVALLVSQKLTDNRFKKYRQEYEALVSKIELLDNRNEAVDKEMLQKIMTTVMPIAKAVNKLNQEVGL*
Ga0073579_119087357	F086303	N/A	MKSLISALVLTAASVLPVSAGIHDFNPRNAAPTPTRQKVRVGHGQCITTADRSKICYLKTSATNFSISILDVDYPGAPEVAHIDCSTGRWRAFGDLPKATLNLYLGQFCPTFS*
Ga0073579_119087368	F042077	N/A	MDQSYCLISSFDLERIDEMLVRAINICSSPRPFSQTSDEDDCTASYAGAYGYSYQTLKSIKEHIDTARPFDPSVTGVPF*
Ga0073579_119087374	F099044	GGA	MQRIDVPVDAKFADVLKDYCAYYGLTMGEFMYEAAKQHIHSSAAMCDLAHGILETHGTAPDKRSSKHCYGFKCRCCMHEVACRTGLYKNYWEIADEHKHLLKEQDEPCSCDEYNP*
Ga0073579_119087385	F089526	N/A	MNLNKEQLNDVKHAVAYYMYHHVSVNNPRYNDYEVILQLLSETREEK*
Ga0073579_119087387	F089526	GAG	MNLNKEQLNDVKHAVAYYMYHHVSISNPRYNDYEVILQLLNEYKDESK*
Ga0073579_119087390	F072853	N/A	MAASVGNVYDVLECVKQEVKELCKQEAVSQQLVWLLLRQQADYQLLLLKDSNN*