Metagenome Family F072853

Overview

Basic Information

• Family ID: F072853
• Family Type: Metagenome
• Number of Sequences: 121
• Average Sequence Length: 52 residues
• Representative Sequence: MAASVSNVYDVLDTVKNEVDVLCAQENVSPLLVWLLLRQQADYQLLLLNNPID
• Number of Associated Samples: 60
• Number of Associated Scaffolds: 121

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 7.44 %
• % of genes near scaffold ends (potentially truncated): 23.14 %
• % of genes from short scaffolds (< 2000 bps): 80.17 %
• Associated GOLD sequencing projects: 53
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (74.380 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (40.496 % of family members)
• Environment Ontology (ENVO): Unclassified (85.124 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (81.818 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 51.85%
  β-sheet: 0.00%
  Coil/Unstructured: 48.15%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00504	Chloroa_b-bind	10.74
PF00124	Photo_RC	5.79
PF13392	HNH_3	1.65
PF05315	ICEA	1.65
PF02511	Thy1	0.83
PF03330	DPBB_1	0.83
PF07460	NUMOD3	0.83
PF02867	Ribonuc_red_lgC	0.83
PF01176	eIF-1a	0.83
PF01503	PRA-PH	0.83
PF07681	DoxX	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.83
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.83
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.83
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.83
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
All Organisms	root	All Organisms	25.62 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Viruses	superkingdom	All Organisms → Viruses	21.49 %
cellular organisms	root	All Organisms → cellular organisms	4.13 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.13 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.49 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.49 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.49 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2189573028|GS313G0146KB_1112079340936	Not Available	796
3300001450|JGI24006J15134_10019890	Not Available	3105
3300001450|JGI24006J15134_10027028	Not Available	2563
3300001450|JGI24006J15134_10040466	All Organisms → Viruses → Predicted Viral	1975
3300001450|JGI24006J15134_10061029	Not Available	1490
3300001450|JGI24006J15134_10149401	Not Available	768
3300001450|JGI24006J15134_10165708	Not Available	708
3300001450|JGI24006J15134_10219995	Not Available	565
3300001460|JGI24003J15210_10039649	Not Available	1646
3300001947|GOS2218_1044121	All Organisms → cellular organisms → Bacteria	3436
3300004448|Ga0065861_1028828	All Organisms → Viruses → Predicted Viral	2393
3300004448|Ga0065861_1102431	Not Available	545
3300004457|Ga0066224_1085813	All Organisms → Viruses → Predicted Viral	1768
3300004460|Ga0066222_1159609	Not Available	650
3300004460|Ga0066222_1180803	Not Available	1134
3300004460|Ga0066222_1181965	Not Available	577
3300004461|Ga0066223_1190782	Not Available	548
3300005239|Ga0073579_1165475	Not Available	968
3300005239|Ga0073579_1174464	All Organisms → cellular organisms → Bacteria	14016
3300005239|Ga0073579_1190873	Not Available	86332
3300005239|Ga0073579_1505496	Not Available	847
3300005239|Ga0073579_1523851	Not Available	874
3300005837|Ga0078893_10404687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	832
3300006752|Ga0098048_1023983	All Organisms → cellular organisms → Bacteria	2024
3300006752|Ga0098048_1199860	Not Available	590
3300006789|Ga0098054_1082853	Not Available	1209
3300006793|Ga0098055_1027696	Not Available	2368
3300006793|Ga0098055_1044033	Not Available	1817
3300006793|Ga0098055_1051310	Not Available	1664
3300006793|Ga0098055_1148211	Not Available	904
3300006793|Ga0098055_1278370	Not Available	627
3300006793|Ga0098055_1300957	Not Available	599
3300006919|Ga0070746_10300762	Not Available	737
3300006921|Ga0098060_1003690	Not Available	5556
3300006921|Ga0098060_1053045	Not Available	1196
3300006921|Ga0098060_1100197	Not Available	821
3300006924|Ga0098051_1023090	All Organisms → Viruses → Predicted Viral	1790
3300006925|Ga0098050_1030720	Not Available	1459
3300006925|Ga0098050_1046881	Not Available	1145
3300006925|Ga0098050_1114471	Not Available	686
3300006990|Ga0098046_1120394	Not Available	574
3300007992|Ga0105748_10445233	Not Available	562
3300009593|Ga0115011_11528235	Not Available	591
3300010150|Ga0098056_1268446	Not Available	564
3300010430|Ga0118733_107874646	Not Available	552
3300017708|Ga0181369_1059752	Not Available	839
3300017724|Ga0181388_1098472	Not Available	696
3300017725|Ga0181398_1000040	Not Available	34051
3300017726|Ga0181381_1003999	Not Available	3742
3300017727|Ga0181401_1042571	Not Available	1266
3300017727|Ga0181401_1042572	All Organisms → Viruses → Predicted Viral	1266
3300017727|Ga0181401_1047499	All Organisms → Viruses → Predicted Viral	1185
3300017727|Ga0181401_1063345	Not Available	988
3300017727|Ga0181401_1098551	Not Available	745
3300017727|Ga0181401_1164121	Not Available	536
3300017728|Ga0181419_1005943	Not Available	3761
3300017740|Ga0181418_1018413	Not Available	1836
3300017740|Ga0181418_1056952	Not Available	967
3300017744|Ga0181397_1013839	All Organisms → Viruses → Predicted Viral	2440
3300017750|Ga0181405_1079719	Not Available	837
3300017753|Ga0181407_1118631	Not Available	660
3300017755|Ga0181411_1028944	All Organisms → Viruses → Predicted Viral	1768
3300017756|Ga0181382_1007524	All Organisms → Viruses → Predicted Viral	3884
3300017757|Ga0181420_1009700	Not Available	3298
3300017757|Ga0181420_1061951	Not Available	1187
3300017757|Ga0181420_1156087	Not Available	678
3300017757|Ga0181420_1192371	Not Available	595
3300017762|Ga0181422_1084303	Not Available	1001
3300017762|Ga0181422_1160131	Not Available	688
3300017764|Ga0181385_1162092	Not Available	677
3300017769|Ga0187221_1015174	All Organisms → Viruses → Predicted Viral	2791
3300017770|Ga0187217_1253480	Not Available	574
3300017772|Ga0181430_1176493	Not Available	615
3300017776|Ga0181394_1082071	Not Available	1044
3300017783|Ga0181379_1064594	Not Available	1377
3300017786|Ga0181424_10067422	Not Available	1546
(restricted) 3300024255|Ga0233438_10016773	All Organisms → Viruses → Predicted Viral	4683
(restricted) 3300024255|Ga0233438_10038525	All Organisms → cellular organisms → Bacteria	2566
(restricted) 3300024255|Ga0233438_10055242	Not Available	1993
(restricted) 3300024255|Ga0233438_10066518	All Organisms → Viruses → Predicted Viral	1756
(restricted) 3300024255|Ga0233438_10091119	All Organisms → Viruses → Predicted Viral	1414
(restricted) 3300024255|Ga0233438_10097808	Not Available	1347
(restricted) 3300024255|Ga0233438_10112544	All Organisms → Viruses → Predicted Viral	1221
(restricted) 3300024255|Ga0233438_10123189	All Organisms → Viruses → Predicted Viral	1147
(restricted) 3300024255|Ga0233438_10129977	All Organisms → Viruses → Predicted Viral	1106
(restricted) 3300024255|Ga0233438_10171237	Not Available	914
(restricted) 3300024255|Ga0233438_10265250	Not Available	672
(restricted) 3300024255|Ga0233438_10337241	Not Available	567
(restricted) 3300024518|Ga0255048_10461612	Not Available	615
(restricted) 3300024518|Ga0255048_10632826	Not Available	517
(restricted) 3300024520|Ga0255047_10504115	Not Available	609
3300025071|Ga0207896_1037915	Not Available	809
3300025071|Ga0207896_1069254	Not Available	552
3300025084|Ga0208298_1061547	Not Available	718
3300025085|Ga0208792_1018613	Not Available	1467
3300025085|Ga0208792_1076779	Not Available	599
3300025099|Ga0208669_1129535	Not Available	506
3300025108|Ga0208793_1015308	All Organisms → Viruses → Predicted Viral	2843
3300025108|Ga0208793_1025979	All Organisms → Viruses → Predicted Viral	2001
3300025108|Ga0208793_1041153	Not Available	1472
3300025108|Ga0208793_1066975	All Organisms → Viruses → Predicted Viral	1065
3300025108|Ga0208793_1123586	Not Available	705
3300025108|Ga0208793_1142430	Not Available	639
3300025141|Ga0209756_1078436	All Organisms → Viruses → Predicted Viral	1491
3300025168|Ga0209337_1025161	Not Available	3387
3300025168|Ga0209337_1049447	All Organisms → Viruses → Predicted Viral	2190
3300025168|Ga0209337_1059105	All Organisms → Viruses → Predicted Viral	1946
3300025168|Ga0209337_1060279	Not Available	1919
3300025168|Ga0209337_1095823	All Organisms → Viruses → Predicted Viral	1396
3300025168|Ga0209337_1186269	Not Available	859
3300025168|Ga0209337_1315076	Not Available	557
3300025668|Ga0209251_1148749	Not Available	613
3300025695|Ga0209653_1102404	Not Available	925
3300028194|Ga0257106_1180953	Not Available	731
3300028197|Ga0257110_1002589	Not Available	8415
3300031519|Ga0307488_10093250	All Organisms → Viruses → Predicted Viral	2213
3300031519|Ga0307488_10626789	Not Available	620
3300031621|Ga0302114_10087776	All Organisms → Viruses → Predicted Viral	1451
3300032073|Ga0315315_10442844	All Organisms → Viruses → Predicted Viral	1206
3300032073|Ga0315315_10467933	Not Available	1169
3300032073|Ga0315315_10876828	Not Available	812

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	46.28%
Strait	Environmental → Aquatic → Marine → Strait	24.79%
Inlet	Environmental → Aquatic → Marine → Inlet	12.40%
Coastal	Environmental → Aquatic → Marine → Coastal	10.74%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.79%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	46.28%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	24.79%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	12.40%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.92%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.96%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.83%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	40.50%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	24.79%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	12.40%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	5.79%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	5.79%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.48%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.48%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.65%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.83%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.83%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.83%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.83%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine	0.83%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2189573028	Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15m	Environmental
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental
3300001947	Marine microbial communities from the Gulf of Maine, Canada - GS002	Environmental
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental
3300006925	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG	Environmental
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental
3300025071	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)	Environmental
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental
3300025668	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)	Environmental
3300025695	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)	Environmental
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GS313G0146KB_00627430	2189573028	Marine Estuarine	MAASVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQAD
JGI24006J15134_100198905	3300001450	Marine	MAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQADYQLLLLNNPTV*
JGI24006J15134_100270282	3300001450	Marine	MAAHVSNVYDVLECVKQEVEELCSQEAVSPLLVWLLLRQQADYQLLLLKDSNN*
JGI24006J15134_100404667	3300001450	Marine	MAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQAEYELLLLQHPTD*
JGI24006J15134_100610292	3300001450	Marine	MAAPVSNIYAVLEGITDQVEELAKQDKVSPLLIWLLLRQQAEYQLLLLHNPID*
JGI24006J15134_101494013	3300001450	Marine	MAAPVSNIYAVLEGITDQVEELAEQDKVSPLLIWLLLRQQAEYQLLLLQNPID*
JGI24006J15134_101657081	3300001450	Marine	LMAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQAEYELLLLQHPQT*
JGI24006J15134_102199952	3300001450	Marine	MTATVTSVYDVLDTIKNEVDILCAKENVSPLLVWLVLRQQADYQLLLLSNPID*
JGI24003J15210_100396491	3300001460	Marine	MAASVSNVYDVLDSVKNEVDVLCAQEDVSPLLIWLLLRQQADYQLLLL
GOS2218_10441212	3300001947	Marine	MAASVSNVYDVLECVKQEVEELCKQQEVSPLLVWLLLRQQADYQLLLLVNINDK*
Ga0065861_10288283	3300004448	Marine	MAASVSNVYDVLDNVRNEVHTICIEENVSPLLVWLLLRQQADYQLLLLKNPVN*
Ga0065861_11024312	3300004448	Marine	MAASVTNVYDVLDGVKKEVEDISEKENVSPLLVWLLLRQQADYQLLLLKNPID*
Ga0066224_10858135	3300004457	Marine	MAAPVSNIYAVLEGITEQVEELSKQDKVSPLLVWLLLRQQAEYELLLLQHSTD*
Ga0066222_11596092	3300004460	Marine	MAASVSNVYDVLDCVKQEVEQLCEQQQVSPLLVWLLLRQQADYQLLLLKNPID*
Ga0066222_11808033	3300004460	Marine	CCLMAASVTNVYDVLDGVKNEVDCISAKENVSPMLIWLLLRQQADYELLLITNPTE*
Ga0066222_11819653	3300004460	Marine	MAASVTNVYDVLDGVKNEVDCISAKENVSPMLIWLLLRQQ
Ga0066223_11907822	3300004461	Marine	MAASVSNVYDVLDCVKQEVEELCRQQEVSPLLVWLLLRQQADYQLLLLVNINDK*
Ga0073579_11654754	3300005239	Marine	MAASVSNVYGVLDCVKQEVEELCKQQEVSPLLVWLLLRQQADYQLLLLTNSTNLTN*
Ga0073579_117446412	3300005239	Marine	MAASVSNVYDVLECVKQEVEELCKQQEVSPLLVWLLLRQQADYQLLLLVNINDKLIYAP*
Ga0073579_119087390	3300005239	Marine	MAASVGNVYDVLECVKQEVKELCKQEAVSQQLVWLLLRQQADYQLLLLKDSNN*
Ga0073579_15054962	3300005239	Marine	MAASVSNVYGVLDCVKQEVEELCKREAVSPLLVWLLLRQQADYQLLLLNNPID*
Ga0073579_15238511	3300005239	Marine	MAVSVSSVYDVLDTIKNEVDCLCAKENISPMLVWLLLRQQADYQLLLQQESTD*
Ga0078893_104046873	3300005837	Marine Surface Water	MAASVGNVYDVLDCVKNKVEALCEQEDVSPQLVWLLLRQQADYQLLLLNNPSE*
Ga0098048_10239831	3300006752	Marine	IAGLVTSDAAMAASVSNVYDVLDTIKNEVDCLCAQENISPLLVWLVLRQQADYQLLLLSKPTD*
Ga0098048_11998603	3300006752	Marine	MAASVSNVYDVLDCVKNEVDCICAKENVSPLLIWLLLRQQADYQLLLLQ
Ga0098054_10828531	3300006789	Marine	MAASVTNVYDVLDTIKNEVDCLCAKEDVSPLLVWLVLRQQADYQLLLLSKPTD*
Ga0098055_10276965	3300006793	Marine	MAVPVSNVYDVLDCVKKEVEELCKREAVSPLLVWLLLRQQADYQLLLLQNPTD*
Ga0098055_10440334	3300006793	Marine	MAVPVSNVYDVLDCVKKEVEELCKRETVSPLLVWLLLRQQADYQLLLLQNPID*
Ga0098055_10513102	3300006793	Marine	MAASVTNVYDVLDTIKNEVDCLCAKEDVSPLLVWLVLRQQADYQLLLLSNPVD*
Ga0098055_11482112	3300006793	Marine	MAASVSNVYDVLESVKQEVEELCKQEAVSPLLVWLLLRQQADYQLLLLTNPID*
Ga0098055_12783702	3300006793	Marine	MAASVSNIYDVLDTVKNEVDCVCAQENVSELLVWLLLRQQADYQLLLLQDPIQ*
Ga0098055_13009573	3300006793	Marine	MAASVSNVYDVLDCVKQEVEELCKQEAVSPLLVWLLLRQQA
Ga0070746_103007622	3300006919	Aqueous	MAASVSNVYDVLECVKQEVEELCKQEGISPLLVWLLLRQQADYQLLLLSNPED*
Ga0098060_10036904	3300006921	Marine	MVAKVSCVYDVLECVKDEVEELCRQEEVSPLLVWLLLRQQADYQLLLLNNPPE*
Ga0098060_10530452	3300006921	Marine	MAASVSNVYDVLECVKKEVDVLCAHENVSPLLVWLLLRQQADYQLLLLQDPIK*
Ga0098060_11001972	3300006921	Marine	MAAPVSSVYDVLDCVRNKVEELCVEEELSPLLVWLVLRQQADYQLLLLQDTNE*
Ga0098051_10230906	3300006924	Marine	MASTVGNVYDVLDTIKNEVDCLCAKEDVSPLLVWLVLRQQADYQLLLLSNPVD*
Ga0098050_10307203	3300006925	Marine	MAASVSNIYDVLDVVKNEVDCVCDKENVSPLLIWLLLRQQADYQLLLLQHPID*
Ga0098050_10468812	3300006925	Marine	MAASVTNVYDVLDTIKNEVDCLCAQENVSPLLVWLVLRQQADYQLLLLSNPTD*
Ga0098050_11144713	3300006925	Marine	MAASVSNVYDVLDCVKQEVDELCKQEEVSPLLVWLLLRQQADYQLLLLSNPSD*
Ga0098046_11203943	3300006990	Marine	MAVPVSNVYDVLDCVKKEVEELCKREAVSPLLVWLLLRQQADY
Ga0105748_104452332	3300007992	Estuary Water	MAASVSNVYDVLDTIKNEVDCLCAKENVSPLLVWMVLRQQADYQLLLLSNP
Ga0115011_115282352	3300009593	Marine	MAASVTNVYDVLDTVKNEVDCLCAKENVSPMLVWLLLRQQADYELLLQSNPVD*
Ga0098056_12684461	3300010150	Marine	MAASVSNVYDVLESVKQEVEELCKQEAVSPLLVWLLLRQQAD
Ga0118733_1078746462	3300010430	Marine Sediment	MAASVSNVYDVLDRVKDEVDELCKQENVSPLLVWLLLRQQADYQLLLLTNSTN*
Ga0181369_10597521	3300017708	Marine	MAASVSNVYDVLECVKQEVEELCRQESVSPLLVWLLLRQQ
Ga0181388_10984722	3300017724	Seawater	MAASVMSVYDVLDTIKNEVDILCAKEDVSPLLVWLVLRQQADYQLLLLSNPTD
Ga0181398_100004032	3300017725	Seawater	MAASVSNVYDVLECVKNKVEELCVAEEVSPLLVWLLLRQQADYQLLLLQDSNK
Ga0181381_10039992	3300017726	Seawater	MAVSVSNVYDILECVKAEVKELCKQQQVSPALVWLLLRQQADYQLLLLKEKNQ
Ga0181401_10425712	3300017727	Seawater	MAASVTNVYDVLDTIKNEVDCLCAKENVSPLLVWMVLRQQADYQLLLLSNPTD
Ga0181401_10425721	3300017727	Seawater	TNVYDVLDTIKNEVDVLCAKENVSPLLVWLLLRQQADYQLLLLDNPID
Ga0181401_10474992	3300017727	Seawater	MAASVSNVYDVLDCVKQEVDTLCAQENVSPLLVWLLLRQQADYQLLLLQDPIQ
Ga0181401_10633452	3300017727	Seawater	MTASVTNVYDVLDTIKNEVDILCAKENVSPLLVWLVLRQQADYQLLLLNNPVD
Ga0181401_10985512	3300017727	Seawater	MAASVVNVYDVLDTIKNEVDILCAKEDVSPLLVWLVLRQQADYQLLLLSNPTD
Ga0181401_11641211	3300017727	Seawater	MAASVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQADYQ
Ga0181419_10059431	3300017728	Seawater	MAVSVSNVYDVLECVKQEVEELCKQESVSPLLVWLLLRQQADYQLLLLQESNQ
Ga0181418_10184133	3300017740	Seawater	MTATVTNVYDVLDTIKNEVDCLCAQENVSPLLVWMVLRQQADYQLLLLSNPTD
Ga0181418_10569522	3300017740	Seawater	MAASVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQADYQLLLLQDPIK
Ga0181397_10138395	3300017744	Seawater	MAASVSNVYDVLDTVKNEVDVLCAKENVSPLLIWLLLRQQADYQLLLLSDPID
Ga0181405_10797193	3300017750	Seawater	MAASASNVYDVLDCVKQEVDTLCAQENVSPLLVWLLLRQQ
Ga0181407_11186312	3300017753	Seawater	SVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQADYQLLLLNNPID
Ga0181411_10289442	3300017755	Seawater	MAASVSNVYDVLNCVRNKVEELCVEEDVSELLIWLLLRQQADYQLLLLSDPVD
Ga0181382_100752411	3300017756	Seawater	MAASVSNVYDVLECVKQEVEELCKQESVSPLLVWLLLRQQADYQLLLLQESNQ
Ga0181420_10097007	3300017757	Seawater	MAASVSNVYDVLDCVKQEVDTLCAQENVSPLLIWLLLRQQADYQLLLLQDPIQ
Ga0181420_10619513	3300017757	Seawater	MAASVSNVYDVLECVKQEVEELCLQESVSPQLVWLLLRQQADYQLLLLQDSNN
Ga0181420_11560871	3300017757	Seawater	SNVYDVLECVKQEVEELCLQESVSPQLVWLLLRQQADYQLLLLQDSNE
Ga0181420_11923711	3300017757	Seawater	MAASVSNVYDVLDTVKNEVDVLCAQENVSPLLVWLLLRQQADYQLLLLNNPID
Ga0181422_10843032	3300017762	Seawater	MAASVTNVYDVLDTVKNEVDILCAQENVSPMLVWLLLRQQADYQLLLIQDPID
Ga0181422_11601312	3300017762	Seawater	MAASVSNIYDVLDTVKNEVDCLCAKENVSPLLIWLLLRQQADYQLLLQNDSID
Ga0181385_11620922	3300017764	Seawater	MVASVTNVYHVLDTIKNEVDVLCAKENVSPLLVWLLLRQQADYQLLLLQNPID
Ga0187221_10151749	3300017769	Seawater	MAASVSNVYDVLECVKQEVEELCKQESVSPLLVWLLLRQQADYQLSLLQESNQ
Ga0187217_12534801	3300017770	Seawater	MAASVSNVYDVLECVKQEVEELCRKENVSPLLVWLLLRQQADYQLLLL
Ga0181430_11764933	3300017772	Seawater	MAASVSNVYDVLDTVKNEVDVLCAQENVSPLLIWLLLRQQADYQLLLL
Ga0181394_10820712	3300017776	Seawater	MAGSVTNVYDVLDTIKNEVDCLCAKENVSPLLVWMVLRQQADYQLLLLSNPTD
Ga0181379_10645942	3300017783	Seawater	MTASVTNVYDVLDTIKNEVDILCAKENVSPLLIWLLLRQQADYQLLLLDNPID
Ga0181424_100674223	3300017786	Seawater	MAASVSNVYDVLDTVKNEVDVLCAKENVSPLLVWLLLRQQADYQLLLLQDPTV
(restricted) Ga0233438_100167733	3300024255	Seawater	MAASVTSVYDVLDTIKNEVDILCDKENVSPLLVWLVLRQQADYQLLLLGNPQD
(restricted) Ga0233438_100385258	3300024255	Seawater	MVASVTNVYDVLDTVKNEVDVLCAKEDVSPLLVWLLLRQQADYQLLLISNPTD
(restricted) Ga0233438_100552425	3300024255	Seawater	MVASVSNVYDVLDTIKNEVDILCAKENVSPLLVWLVLRQQADYQLLLLSNPLD
(restricted) Ga0233438_100665184	3300024255	Seawater	MAASVSNVYDVLDTVKNEVDILCAQENVSPLLVWLLLRQQADYQLLLLQDPIK
(restricted) Ga0233438_100911193	3300024255	Seawater	MVATVTNVYDVLDIIKNEVDVLCANENVSPLLVWLVLRQQADYQLLLLSNPED
(restricted) Ga0233438_100978083	3300024255	Seawater	MTATVTNVYDVLDTIKNEVDCLCAKENVSPLLVWMVLRQQADYQLLLLSNPTD
(restricted) Ga0233438_101125443	3300024255	Seawater	MAASVSNVYDVLECVKQEVEELCRQQKVSPLLVWLLLRQQADYQLLLLANINDK
(restricted) Ga0233438_101231892	3300024255	Seawater	MAASVSNVYDVLDTVKNEVDILCAQENVSPLLVWLLLRQQADYQLLLLQDPII
(restricted) Ga0233438_101299772	3300024255	Seawater	MAASVTNVYDVLDTVKNEVDILSAQENVSPMLVWLLLRQQADYQLLLLQDPID
(restricted) Ga0233438_101712372	3300024255	Seawater	MAASVTSVYDVLDTIKNEVDILCDKENISPLLVWLVLRQQADYQLLLLGNPQD
(restricted) Ga0233438_102652503	3300024255	Seawater	MAASVSNVYDVLECVKQEVEELCKQESVSPLLVWLLLRQQADYQLLLLQDPLK
(restricted) Ga0233438_103372412	3300024255	Seawater	MAASVTKVYDVLDTVKNEVDILCAQENVSPLLVWLLLRQQADYQLLLLSDPID
(restricted) Ga0255048_104616123	3300024518	Seawater	MTASVMSVYDVLDTIKNEVDVLCAKENVSPLLVWLVLRQQADYQLLLLSNPTD
(restricted) Ga0255048_106328261	3300024518	Seawater	MAASVTSVYDVLDTIKNEVDILCDKENISPLLVWLVLRQQA
(restricted) Ga0255047_105041151	3300024520	Seawater	MAASVSNVYDVLDCVKNEVDVLCAKEDVTPLLVWLLLRQQA
Ga0207896_10379152	3300025071	Marine	ASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQAEYELLLLQHPQT
Ga0207896_10692541	3300025071	Marine	MAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQAEYELLLLQHPTD
Ga0208298_10615472	3300025084	Marine	MAVPVSNVYDVLDCVKKEVEELCKRETVSPLLVWLLLRQQADYQLLLLQNPID
Ga0208792_10186132	3300025085	Marine	MAASVTNVYDVLDTIKNEVDCLCAKEDVSPLLVWLVLRQQADYQLLLLSKPTD
Ga0208792_10767791	3300025085	Marine	MAASVSNVYDVLDCVKQEVDELCKQEEVSPLLVWL
Ga0208669_11295352	3300025099	Marine	MAAPVSSVYDVLDCVRNKVEELCVEEELSPLLVWLVLRQQADYQLLLLQDTNE
Ga0208793_10153081	3300025108	Marine	MAASVSTVYDVLDRVKNEVHGICIDENVSPLLVWLLLRQQA
Ga0208793_10259793	3300025108	Marine	MAASVSNVYDVLESVKQEVEELCKQEAVSPLLVWLLLRQQADYQLLLLTNPID
Ga0208793_10411532	3300025108	Marine	MAASVSNIYDVLDTVKNEVDCVCAQENVSELLVWLLLRQQADYQLLLLQDPIQ
Ga0208793_10669752	3300025108	Marine	MAASVSNVYDVLDCVKQEVDELCKQEEVSPLLVWLLLRQQADYQLLLLSNPSD
Ga0208793_11235862	3300025108	Marine	MAASVSNVYDVLDCVKQEVEELCKQEAVSPLLVWLLLRQQADYQLLLLQDPIK
Ga0208793_11424301	3300025108	Marine	MAASVTNVYDVLDTIKNEVDCLCAKEDVSPLLVWLVLRQQADYQLLLL
Ga0209756_10784361	3300025141	Marine	MAASVSNVYDVLECVKQEVEELCRHEEVSPLLVWLLLRQQADYQLLLLQD
Ga0209337_10251615	3300025168	Marine	MAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQADYQLLLLNNPTV
Ga0209337_10494472	3300025168	Marine	MAAPVSNIYAVLEGITDQVEELAKQDKVSPLLIWLLLRQQAEYQLLLLHNPID
Ga0209337_10591055	3300025168	Marine	MAAPVSNIYAVLEGITDQVEELAEQDKVSPLLIWLLLRQQAEYQLLLLRNN
Ga0209337_10602794	3300025168	Marine	MAAHVSNVYDVLECVKQEVEELCSQEAVSPLLVWLLLRQQADYQLLLLKDSNN
Ga0209337_10958234	3300025168	Marine	MTATVTSVYDVLDTIKNEVDILCAKENVSPLLVWLVLRQQADYQLLLLSNPID
Ga0209337_11862693	3300025168	Marine	MAASVSNIYAVLEGITDQVEELAEQDKVSPLLIWLLLRQQADYQLLLLQNSQT
Ga0209337_13150763	3300025168	Marine	MAASVSNVYDVLDTVKNEVDVLCAQENVSPLLIWLLLRQQADYQLLLLQDPID
Ga0209251_11487491	3300025668	Marine	MAASVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQADYQLLLLNNPTV
Ga0209653_11024043	3300025695	Marine	MAASVSNVYDVLDCVKNEVDVLCAKEDVSPLLVWLLLRQQADYQLLLLNN
Ga0257106_11809531	3300028194	Marine	MAAPVSNIYAVLEGITDQVEELAEQDKVSPLLIWLLLRQQAEYQLLLLRND
Ga0257110_10025895	3300028197	Marine	MAVSVGNVYDVLECVKQEVEELCKQEAVSQQLVWLLLRQQADYQLLLLKDSNN
Ga0307488_100932502	3300031519	Sackhole Brine	MAASVSNVYDVLERVKNEVHSLCIDENVSPLLVWLVLRQQADYQLLLLTNSTNLTN
Ga0307488_106267891	3300031519	Sackhole Brine	MAAPVSNIYAVLEGITDQVEELAEQDKVSPLLIWLLLRQQAEYQLLLLQNPID
Ga0302114_100877765	3300031621	Marine	MAASVTKVYDVLDTVKNEVDILCAQENVSPLLVWLLLRQQADYQLLLLQDPIT
Ga0315315_104428444	3300032073	Seawater	MAASVSNVYDVLECVKQEVEELCLQESVSPQLVWLLLRQQADYQLLLLQDSNE
Ga0315315_104679332	3300032073	Seawater	MAASVSNVYDVLDTVKNEVDVLCAQENVSPLLVWLLLRQQADYQLLLLQDPTV
Ga0315315_108768282	3300032073	Seawater	MAASVSNVYDVLECVKQEVEELCRKENVSPLLVWLLLRQQADYQLLLLNTSTDSCQDGNYLIGKYC