Scaffold B570J40625_100013477

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100013477
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14526
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Associated Families: 18

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003379	Metagenome / Metatranscriptome	490	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F009143	Metagenome / Metatranscriptome	322	Y
F017134	Metagenome / Metatranscriptome	242	Y
F021481	Metagenome / Metatranscriptome	218	Y
F024319	Metagenome / Metatranscriptome	206	Y
F045755	Metagenome / Metatranscriptome	152	N
F074868	Metagenome / Metatranscriptome	119	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001347711	F004840	GGA	MYKLTCAYDSNAPHWSAEYENEFGAWESFFRFTDWGMANEYSTVNLSTPTGKMYTKVFYRNGMVSVK*
B570J40625_10001347712	F045755	AGGAG	MSEIAGMWICDNCDTLAVVSVLTDTIQITQCKCVTNERETNV*
B570J40625_10001347713	F101047	GGA	MGRMKEIYTQILECETCNGQGWQFFGNQTDYDVEACECNPLGFFQENK*
B570J40625_10001347714	F006744	AGGAG	MNLDEFKKHVIAQREASKAEALSVLSATITKSTNERENL*
B570J40625_10001347715	F000447	AGG	MGYIEIFRMNEDGAGWVDLAEATPDELFNIELGLLEEGAFE*
B570J40625_10001347716	F002598	AGAAGG	MATKLYTIESLLVGKNYRSNSRHFSGEIVSAEARPEIYYGEKTEAYLIEIRTGGLRNKFATIAVKVGE*
B570J40625_10001347717	F001562	AGGAG	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMENE*
B570J40625_10001347719	F074868	AGGTGG	MTTLEKTNIGLALGISGALENRILHDWNNGGAKSTYGLSVYQRKVLLKVLIRENPKCECVACI*
B570J40625_1000134772	F005741	N/A	MKNRYRVEIYDANKANDVTIYSEQGVDREYLTELVFSNLRKFSGRVNAYVYDNVKKKKVTAMFLDESITNKFQTN*
B570J40625_10001347720	F009143	AGG	MMTKWDTIQADVADAYVYIDEEEAYNKALAEGVDFGADDFDDDELHKSLTLDWND*
B570J40625_10001347722	F024319	AGG	MTNRIWESRNDYQNDAQRLGYVSCSAGCGRVTAWTLCVMCGGNYATHNTLGKENN*
B570J40625_10001347725	F003379	GGA	MKKIYALIALTATAVLSGVALSKFLNWAGQIEIFDFDLDEDIDLEDF*
B570J40625_1000134773	F021481	AGGA	MSPILDTAKGRFYRKGDVFTTGKSGITGTITEIVSIRPTLTKLGLNTENGLRWAMVKIGA
B570J40625_10001347732	F092052	GGTGG	MLDKCKNGQCACEQEENFFHIKVIPQNSANFSAADEETFSSYEFESNTLTETDSMGREKFWEDMGRP*
B570J40625_10001347733	F093318	AGTAGG	MKVQYVSKYLSLSQEGLVPELLCPMDQGSLYPNQDGEDRVFVYCLSCNYKKVLGSKDYDNIVKAVENVG*
B570J40625_1000134775	F004051	AGGA	MTIDNKVYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADSLA*
B570J40625_1000134777	F002245	AGG	MSNQIKVPHSIVFEAIIDLDKIPANLLPALLKLTETDLLTMCKGATLHALAEAKVLQIANENNTWAEVTIKEGN*
B570J40625_1000134779	F017134	GAGG	MELFTVACLNSEICGTTMTFDSESDYEVFGDDYMCAECYDSEEMEFYELTGWSDSDALASAGHGMDEDY*