Scaffold JGI12421J11937_10019815

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10019815
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003690	Metagenome / Metatranscriptome	473	Y
F007263	Metagenome / Metatranscriptome	354	Y
F029434	Metagenome / Metatranscriptome	188	Y
F045755	Metagenome / Metatranscriptome	152	N
F050376	Metagenome / Metatranscriptome	145	Y
F076101	Metagenome / Metatranscriptome	118	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100198151	F003690	GGA	MTISGILLELNDYGLELDSFLGAIYLPWHTILITTALLIAYKIYKRKKNK*
JGI12421J11937_1001981510	F045755	GAG	MSEIAGMWICDNCDTLAIVSVETDTILITQCKCVTNERETNV*
JGI12421J11937_1001981511	F076101	GGA	MYKITLAYDGNAPHWQKDYENEFEAWKDFFAFVDWGFADKFSTVNLYNSEMKCFTKIFYREERKVVEVK*
JGI12421J11937_100198152	F085708	AGAAG	MTTNRLLTTLVQLGIGIPALLMARLVWREIVSDYREWANSH*
JGI12421J11937_100198153	F050376	AGG	MTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD*
JGI12421J11937_100198155	F029434	GAG	MKRYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAI*
JGI12421J11937_100198159	F007263	AGG	MLDTKYIDETEFYFIKDEIKFHCDESQFVYVCKAHGEQMGCYYCEFDYDTKCECEG*