Scaffold 2199916473

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2199916473
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25101
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (73.13%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F007112	Metagenome	357	Y
F012455	Metagenome / Metatranscriptome	280	Y
F017301	Metagenome / Metatranscriptome	241	Y
F021288	Metagenome / Metatranscriptome	219	Y
F034573	Metagenome	174	Y
F037701	Metagenome / Metatranscriptome	167	Y
F070095	Metagenome / Metatranscriptome	123	Y
F084217	Metagenome / Metatranscriptome	112	N
F084233	Metagenome / Metatranscriptome	112	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
2200104894	F017301	AGGAG	MSNIDTKQLKAMGASYGRSVLGAGLALYMSGVTDPKDLWAALVAALAPVILRAINPADQAFGLLPTVGAVDTALKAVKAPAKKAAAKKKK
2200104905	F037701	N/A	MIKSKEWRVSNRVWLGVGFAPRRIALGFSVDRFNATIDFLWFWVSLEY
2200104910	F034573	AGGAG	MYRVSRKQIVTKEEKAAIAMGKILSDFYLDLEKVGYYLAKSVPYLIYKRSLSVLESAQFQEDTVEHEKLKYDQRRLP
2200104913	F007112	GAGG	MHTLQYIAVEADSKQEAFDKVVVSLDRNEEGYRMPDWSDWHVVGGGRWSTNAQKSPDFMGGYNNDPTDVLGYAEDESKFKETLTQIRLNKAQAMNRNIVEIKTDKFISDMVDYASEGGRPSNEWRGDDVMNTYSIKQAAQMLMGSWTPDSGAYDMVEYIAEVSYLQERLDKPEQAVRQYLVPVDFHF
2200104918	F021288	GGA	MLGYTQRDLADMTYGVSQADLLINADENPAIHNYLVKARDFLDGLWAEGYFD
2200104920	F084233	N/A	MTLNVQIYEVDYSCSPGGVNCWEVSVDDWCVSDFKTAGDALQYVLDKYPYKELDLNVRSLNWYFKEFADEYAV
2200104923	F004132	AGGA	MSDVMTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHQGRTYAAVAAEARSNHSWLEDQIVEWYDPNYSKEEVLIALAKHFGLNPVKQVEVQGTVSFSGTINIPLNEIEDFDLSNVTIDVDLSSYDYDADLNVDDVSLEDHY
2200104924	F000684	AGGA	MTLGGYTYQLGDLFTTSKTGITGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK
2200104928	F003393	GAGG	MKTLEKDDIIPIMDYIKVDVLTAGQLMVNDFIQYGDDVVCISEIISLPDGYNLEIVNDFGERETIEVGEYDQFDLMMLQ
2200104931	F000808	GGA	MEYTYSLTTSYDGELINTLRVNDMLEAVNAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
2200104932	F100416	AGAAGG	MGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
2200104935	F005348	AGG	MINSVMSFACDECSGSGLIFWGDNLNYDVEKCDCNDFALGTLFTTKEND
2200104937	F084217	AGG	MSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM
2200104940	F012455	GGA	MINEIKNKIIRIQELRRSNAATPIPNKKKYTRKVKHKNGK
2200104943	F070095	AGGAGG	MEFYADLEYISLYVNNLYPNGIAIELPTWLLVGTIALVWSIRQWKK