NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084217

Metagenome / Metatranscriptome Family F084217

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084217
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 39 residues
Representative Sequence MSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM
Number of Associated Samples 84
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.36 %
% of genes near scaffold ends (potentially truncated) 17.86 %
% of genes from short scaffolds (< 2000 bps) 80.36 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (65.179 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(23.214 % of family members)
Environment Ontology (ENVO) Unclassified
(86.607 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(81.250 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 82.86%    β-sheet: 0.00%    Coil/Unstructured: 17.14%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF06067DUF932 6.25
PF03567Sulfotransfer_2 1.79
PF00590TP_methylase 0.89
PF00255GSHPx 0.89
PF01464SLT 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0386Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxidesDefense mechanisms [V] 0.89


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.18 %
All OrganismsrootAll Organisms34.82 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352005|2199916473Not Available25101Open in IMG/M
3300002306|B570J29618_1007839All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage671Open in IMG/M
3300002363|B570J29624_104383All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage883Open in IMG/M
3300002408|B570J29032_108821792Not Available517Open in IMG/M
3300002408|B570J29032_109602751Not Available924Open in IMG/M
3300002835|B570J40625_101183645Not Available641Open in IMG/M
3300003277|JGI25908J49247_10056440All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1012Open in IMG/M
3300003277|JGI25908J49247_10101131All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage694Open in IMG/M
3300003393|JGI25909J50240_1046985Not Available905Open in IMG/M
3300003394|JGI25907J50239_1118035All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage515Open in IMG/M
3300003412|JGI25912J50252_10119176Not Available623Open in IMG/M
3300004792|Ga0007761_11135111All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage815Open in IMG/M
3300005517|Ga0070374_10009893All Organisms → Viruses → Predicted Viral4632Open in IMG/M
3300005517|Ga0070374_10154741Not Available1189Open in IMG/M
3300005517|Ga0070374_10326059Not Available777Open in IMG/M
3300005580|Ga0049083_10056301All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1383Open in IMG/M
3300005580|Ga0049083_10211506Not Available657Open in IMG/M
3300005581|Ga0049081_10050015Not Available1583Open in IMG/M
3300005581|Ga0049081_10084730Not Available1187Open in IMG/M
3300005581|Ga0049081_10235027Not Available647Open in IMG/M
3300005582|Ga0049080_10018358All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2438Open in IMG/M
3300005582|Ga0049080_10224747Not Available617Open in IMG/M
3300005582|Ga0049080_10239095Not Available594Open in IMG/M
3300005583|Ga0049085_10013671All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3132Open in IMG/M
3300005583|Ga0049085_10133813Not Available842Open in IMG/M
3300005583|Ga0049085_10137041Not Available830Open in IMG/M
3300005584|Ga0049082_10028713All Organisms → Viruses → Predicted Viral1940Open in IMG/M
3300005584|Ga0049082_10154482Not Available795Open in IMG/M
3300005584|Ga0049082_10173026Not Available744Open in IMG/M
3300005585|Ga0049084_10193416Not Available697Open in IMG/M
3300005805|Ga0079957_1005681Not Available10112Open in IMG/M
3300005940|Ga0073913_10002788All Organisms → Viruses → Predicted Viral2321Open in IMG/M
3300006484|Ga0070744_10151692Not Available665Open in IMG/M
3300006484|Ga0070744_10154923Not Available657Open in IMG/M
3300006805|Ga0075464_10972013Not Available532Open in IMG/M
3300007544|Ga0102861_1102001Not Available767Open in IMG/M
3300007559|Ga0102828_1080633Not Available780Open in IMG/M
3300007973|Ga0105746_1102900Not Available939Open in IMG/M
3300008120|Ga0114355_1199891Not Available645Open in IMG/M
3300009026|Ga0102829_1056546All Organisms → Viruses → Predicted Viral1183Open in IMG/M
3300009155|Ga0114968_10000324All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes35272Open in IMG/M
3300009155|Ga0114968_10512043Not Available643Open in IMG/M
3300009160|Ga0114981_10391633Not Available749Open in IMG/M
3300009163|Ga0114970_10665065Not Available556Open in IMG/M
3300009181|Ga0114969_10700898Not Available545Open in IMG/M
3300010157|Ga0114964_10010167Not Available5746Open in IMG/M
3300011113|Ga0151517_1550Not Available13133Open in IMG/M
3300012765|Ga0138274_1245465All Organisms → Viruses → Predicted Viral1042Open in IMG/M
3300013004|Ga0164293_10325342All Organisms → Viruses → Predicted Viral1057Open in IMG/M
3300013004|Ga0164293_11059210Not Available503Open in IMG/M
3300013006|Ga0164294_10841468Not Available618Open in IMG/M
(restricted) 3300013122|Ga0172374_1291714Not Available578Open in IMG/M
(restricted) 3300014720|Ga0172376_10152488All Organisms → Viruses → Predicted Viral1538Open in IMG/M
3300014819|Ga0119954_1023510All Organisms → Viruses → Predicted Viral1212Open in IMG/M
3300017723|Ga0181362_1074808Not Available686Open in IMG/M
3300017761|Ga0181356_1182817All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage631Open in IMG/M
3300017774|Ga0181358_1230026Not Available592Open in IMG/M
3300017777|Ga0181357_1322255Not Available519Open in IMG/M
3300019784|Ga0181359_1144407All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage823Open in IMG/M
3300020141|Ga0211732_1496727Not Available2305Open in IMG/M
3300020151|Ga0211736_10371107Not Available676Open in IMG/M
3300020172|Ga0211729_10099371Not Available640Open in IMG/M
3300020205|Ga0211731_10523693Not Available709Open in IMG/M
3300020506|Ga0208091_1010248Not Available1170Open in IMG/M
3300020513|Ga0208090_1001148Not Available4904Open in IMG/M
3300020527|Ga0208232_1007268Not Available1785Open in IMG/M
3300020530|Ga0208235_1009880All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1233Open in IMG/M
3300020536|Ga0207939_1020454All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage929Open in IMG/M
3300020549|Ga0207942_1006420All Organisms → Viruses → Predicted Viral1670Open in IMG/M
3300021963|Ga0222712_10241847All Organisms → Viruses → Predicted Viral1159Open in IMG/M
3300022752|Ga0214917_10001130All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage34856Open in IMG/M
3300023174|Ga0214921_10007013Not Available15164Open in IMG/M
3300023174|Ga0214921_10030725Not Available5275Open in IMG/M
3300023174|Ga0214921_10069087All Organisms → Viruses → Predicted Viral2898Open in IMG/M
3300023174|Ga0214921_10308506Not Available875Open in IMG/M
3300024346|Ga0244775_10989146Not Available664Open in IMG/M
3300027563|Ga0209552_1000307Not Available15559Open in IMG/M
3300027563|Ga0209552_1068296All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage983Open in IMG/M
3300027563|Ga0209552_1136469All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage638Open in IMG/M
3300027581|Ga0209651_1036033Not Available1512Open in IMG/M
3300027581|Ga0209651_1055667All Organisms → Viruses → Predicted Viral1169Open in IMG/M
3300027581|Ga0209651_1174996Not Available570Open in IMG/M
3300027608|Ga0208974_1000577All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes14957Open in IMG/M
3300027608|Ga0208974_1062542Not Available1046Open in IMG/M
3300027642|Ga0209135_1122486Not Available858Open in IMG/M
3300027644|Ga0209356_1133967Not Available702Open in IMG/M
3300027649|Ga0208960_1054188Not Available1261Open in IMG/M
3300027689|Ga0209551_1187098All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage638Open in IMG/M
3300027707|Ga0209443_1150310All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage848Open in IMG/M
(restricted) 3300027728|Ga0247836_1076379Not Available1736Open in IMG/M
3300027732|Ga0209442_1086114All Organisms → Viruses → Predicted Viral1287Open in IMG/M
3300027741|Ga0209085_1000015All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae115655Open in IMG/M
3300027746|Ga0209597_1034625All Organisms → Viruses → Predicted Viral2629Open in IMG/M
3300027754|Ga0209596_1092980Not Available1440Open in IMG/M
3300027770|Ga0209086_10001048Not Available22779Open in IMG/M
3300027770|Ga0209086_10186232Not Available969Open in IMG/M
3300027770|Ga0209086_10277765Not Available726Open in IMG/M
3300027808|Ga0209354_10245760Not Available719Open in IMG/M
3300027963|Ga0209400_1102286Not Available1331Open in IMG/M
(restricted) 3300027977|Ga0247834_1095965Not Available1341Open in IMG/M
(restricted) 3300028569|Ga0247843_1057581Not Available2088Open in IMG/M
3300032092|Ga0315905_11602206All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage505Open in IMG/M
3300033816|Ga0334980_0001533Not Available10645Open in IMG/M
3300033979|Ga0334978_0070682All Organisms → Viruses → Predicted Viral1790Open in IMG/M
3300033979|Ga0334978_0076226All Organisms → Viruses → Predicted Viral1717Open in IMG/M
3300033980|Ga0334981_0314005Not Available691Open in IMG/M
3300033981|Ga0334982_0083180Not Available1711Open in IMG/M
3300033995|Ga0335003_0297454Not Available726Open in IMG/M
3300034106|Ga0335036_0221552All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1298Open in IMG/M
3300034122|Ga0335060_0307958Not Available864Open in IMG/M
3300034122|Ga0335060_0557170Not Available582Open in IMG/M
3300034284|Ga0335013_0471625Not Available757Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake23.21%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater20.54%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic16.07%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake12.50%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater8.04%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.36%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater2.68%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.68%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.68%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.89%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.89%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.89%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.89%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.89%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.89%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352005Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnionEnvironmentalOpen in IMG/M
3300002306Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002363Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003412Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DDEnvironmentalOpen in IMG/M
3300004792Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300005940Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300010157Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaGEnvironmentalOpen in IMG/M
3300011113Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015SepEnvironmentalOpen in IMG/M
3300012765Freshwater microbial communities from Lake Croche, Canada - C_131016_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013122 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3mEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300014819Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011AEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020513Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020527Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020536Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020549Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300027563Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027581Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027642Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027644Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027649Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027689Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027707Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027746Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034122Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
22001049372199352005FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM
B570J29618_100783913300002306FreshwaterMSDYLNYLDEVYNDLVSEYGEGINLAYHEANKSEM*GNSHSNT
B570J29624_10438333300002363FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHETNIKEM*GNSHSNTP
B570J29032_10882179223300002408FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANKSEM*GNSHSNTPPTIRKCQR*
B570J29032_10960275143300002408FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM*GNSHPNTPP*
B570J40625_10118364533300002835FreshwaterLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANKSEM*
JGI25908J49247_1005644013300003277Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM*GNSHSNTPP*
JGI25908J49247_1010113123300003277Freshwater LakeLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*
JGI25909J50240_104698533300003393Freshwater LakeMNDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*GNSHSTR*
JGI25907J50239_111803513300003394Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANIKEM*GNSHSNTPP*
JGI25912J50252_1011917623300003412Freshwater LakeLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVAEM*
Ga0007761_1113511113300004792Freshwater LakeKLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*
Ga0070374_10009893163300005517Freshwater LakeMSNYLNYQDEIYSDLVAEYGEDITLAYHNANISDMS*
Ga0070374_1015474123300005517Freshwater LakeMSDYLDYMDEVYNDLVSEFGEEITLAYHEANIAEM*
Ga0070374_1032605943300005517Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*GNSHSTR*
Ga0049083_1005630163300005580Freshwater LenticMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVAEM*
Ga0049083_1021150613300005580Freshwater LenticMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVAEM*GNSHPTDSVSA**
Ga0049081_1005001533300005581Freshwater LenticMSDYLNYQDEIYSDLVSEYGEGITLAYHQVNIADMS*
Ga0049081_1008473043300005581Freshwater LenticMSDYLNYLDEVYTDLVAEYGEAITLAYHVANEKEM*
Ga0049081_1023502733300005581Freshwater LenticMSDYLNYQDEVYTDLVAEYGEGITLAYHEANIKEM*GNSHSNTPPTI
Ga0049080_1001835853300005582Freshwater LenticMNDYLNYMDEVYDELVSEYGEGITLAYHEANVSEM*
Ga0049080_1022474723300005582Freshwater LenticMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVAEM*
Ga0049080_1023909523300005582Freshwater LenticMSDYLNYQDEVYADLVAEYGEGITLAYHQANIAEM*
Ga0049085_10013671113300005583Freshwater LenticMDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM*
Ga0049085_1013381323300005583Freshwater LenticMSDYLNYQDEIYSDLVAEYGEGITLAYHNANISEM*
Ga0049085_1013704143300005583Freshwater LenticMNDYINYLDEVYDDLVSEYGEGITLAYHEANVAEM*GNSHSTPSVSA**
Ga0049082_1002871383300005584Freshwater LenticMSDYLNYLDEVYSDLVSEYSEGITLAYHQVNIADMS*
Ga0049082_1015448213300005584Freshwater LenticMNDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*GNSHST
Ga0049082_1017302623300005584Freshwater LenticMSDYLNYQDEIYADLVAEYGEGITLAYHQANIAEM*
Ga0049084_1019341623300005585Freshwater LenticVVILHSRKLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM*
Ga0079957_1005681173300005805LakeMSDYLNYLDEIYDELVDEFGSEATLAYHQANEKEM*
Ga0073913_1000278853300005940SandMSDYLDYLDEVYDDLVSEYGEGITLAYHEANKSEM*
Ga0070744_1015169223300006484EstuarineMSDYLNYLDEVYTDLVAEYGEDITLAYHQANIAEM*
Ga0070744_1015492323300006484EstuarineMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM*
Ga0075464_1097201333300006805AqueousMSDYLNYLDEVYTDLVAEYGEGITIAYHEANIKEM*
Ga0102861_110200123300007544EstuarineMSDYLNYLDEVYTDLVAEYGEGITFAYHEANIKEM*
Ga0102828_108063323300007559EstuarineMSNYLNYQDEIYSDLVAEYGEGITLAYHQANIAEMCGNSHRNTPPIIGKCQ*
Ga0105746_110290033300007973Estuary WaterMDYLNYLDEVYTDLVAEYGEGITLAYHQANIAEM*
Ga0114355_119989143300008120Freshwater, PlanktonMSDYLNYLDEVYTDLVAEYGEGITLAYHETNIKEM*
Ga0102829_105654633300009026EstuarineMNDYLNYLDEVYTDLVAEYGEDITLAYHIANKSEM*GNSHSTDSVSA**
Ga0114968_10000324543300009155Freshwater LakeMNDYLNYLDEVYDDLVSEYGEGITLAYHVANEKEM*
Ga0114968_1051204323300009155Freshwater LakeMSDYLNYLDEVYDDLVAEFGEGITLAYHEANIKEM*
Ga0114981_1039163333300009160Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEM*GNSHSN
Ga0114970_1066506513300009163Freshwater LakeGGLMSDYLNYLDEVYTDLVAEYGEGITLAYHQANVAEM*
Ga0114969_1070089813300009181Freshwater LakeRIGGELMSDYLNYLDEDYTDLVAEYGEGITLAYHQANVAEM*
Ga0114964_10010167173300010157Freshwater LakeMNDYLNYQDEVYNDLVSEFGEEITLAYHEANIAEM*
Ga0151517_155043300011113FreshwaterMSDYLNYLDEVYTDLVAEYGENITLAYHEANIKEM*
Ga0138274_124546543300012765Freshwater LakeLTKKGGNLMNDYLNYQDEVYNDLVSEFGEEITLAYHEANIAEM*
Ga0164293_1032534233300013004FreshwaterMSDYLDYLDEVYEDLVSEYGEGITLAYHEANKSEM*GNSHSTDSVSP**
Ga0164293_1105921023300013004FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLVYHEANIKEM*
Ga0164294_1084146843300013006FreshwaterMSDYLNYLDEVYTDQVAEYGEGITLAYHEANIKEM*
(restricted) Ga0172374_129171423300013122FreshwaterMSDYLNYLDEIYTDLVAEYGEGITAAYHEANIKEM*
(restricted) Ga0172376_1015248843300014720FreshwaterMNDYLNYLDEIYTDLVAEYGEGITAAYHEANIKEM*
Ga0119954_102351013300014819FreshwaterMNEYLNYLDEVYDDLVSEYGEGITFAYHVANEKEM*
Ga0181362_107480823300017723Freshwater LakeMSNYLNYQDEIYSDLVAEYGEDITLAYHEANIKEM
Ga0181356_118281723300017761Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVAEMXGNSHPTDSVSAX
Ga0181358_123002623300017774Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHNANISDMS
Ga0181357_132225513300017777Freshwater LakeVVILHSGKLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM
Ga0181359_114440723300019784Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVAEM
Ga0211732_149672753300020141FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVKEM
Ga0211736_1037110723300020151FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVAEM
Ga0211729_1009937133300020172FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVKEMXGNSHPNTPPTIRK
Ga0211731_1052369333300020205FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVKEMXGNSHPNTPPTIKKCQR
Ga0208091_101024823300020506FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANKSEM
Ga0208090_100114843300020513FreshwaterMSDYLNYLDEVYNDLVSEYGEGINLAYHEANKSEM
Ga0208232_100726833300020527FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYREANIKEM
Ga0208235_100988023300020530FreshwaterMSDYLNYLDEVYTDLVAEYGEGMTLAYHVANEKEM
Ga0207939_102045443300020536FreshwaterMSDYLNYLDEVYTDLVAEYGDGITLAYHVANEKEM
Ga0207942_100642063300020549FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHETNIKEM
Ga0222712_1024184763300021963Estuarine WaterVILHSRKLGDVIMDYLDYLDEVYDDLVSEFGEGITVAHHEANISEM
Ga0214917_10001130313300022752FreshwaterMNEYLNYLDEVYDDLVSEYGEGITFAYHVANEKEM
Ga0214921_1000701323300023174FreshwaterMSDYLNYLDEVYDDLVAEYGEGITLAYHEANIKEM
Ga0214921_10030725163300023174FreshwaterMSDYLNYLDEVYDDLVAEFGEGITLAYHEANIKEM
Ga0214921_1006908763300023174FreshwaterMSDYLNYLDEIYDELVDEFGSEATLAYHQANEKEM
Ga0214921_1030850643300023174FreshwaterMSDYLNYLDGIYDELVDEFGSEATLAYHQANEKEMXGISHSNTPLAGRKCQGYLIG
Ga0244775_1098914623300024346EstuarineMSNYLNYQDEIYSDLVAEYGEGITLAYHNANISEM
Ga0209552_1000307123300027563Freshwater LakeMSDYLDYMDEVYNDLVSEFGEEITLAYHEANIAEM
Ga0209552_106829623300027563Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM
Ga0209552_113646913300027563Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEMXGNSHSNTPPTIRKCQR
Ga0209651_103603363300027581Freshwater LakeMSDYLNYQDEIYSDLVSEYGEGITLAYHQVNIADMS
Ga0209651_105566713300027581Freshwater LakeMNDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM
Ga0209651_117499623300027581Freshwater LakeMSNYLNYQDEIYSDLVAEYGEGITLAYHNANISDMS
Ga0208974_1000577113300027608Freshwater LenticMSDYLNYLDEVYTDLVAEYGEAITLAYHVANEKEM
Ga0208974_106254223300027608Freshwater LenticMSDYLNYQDEVYADLVAEYGEGITLAYHQANIAEM
Ga0209135_112248613300027642Freshwater LakeSNYLNYQDEIYSDLVAEYGEDITLAYHNANISDMS
Ga0209356_113396723300027644Freshwater LakeMSNYLNYQDEIYSDLVAEYGEDITLAYHNANISDMS
Ga0208960_105418843300027649Freshwater LenticMDYLNYLDEVYTDLVAEYGEGITLAYHQANIAEMXGNS
Ga0209551_118709843300027689Freshwater LakeDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM
Ga0209443_115031013300027707Freshwater LakeVVILHSRKLGDVMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVSEM
(restricted) Ga0247836_107637953300027728FreshwaterMSDYLNYQDEIYSDLVAEYGEGITLAYHQANIAEM
Ga0209442_108611433300027732Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANVAEMXGNSHPTDSVSAX
Ga0209085_1000015793300027741Freshwater LakeMNDYLNYQDEVYNDLVSEFGEEITLAYHEANIAEM
Ga0209597_103462533300027746Freshwater LakeMSDYLNYLDEVYTDLVAEYGEDITLAYHQANIAEM
Ga0209596_109298013300027754Freshwater LakeMSDYLNYLDEVYTDLVAEYGEGITLAYHQANIAEM
Ga0209086_10001048443300027770Freshwater LakeMNDYLNYLDEVYDDLVSEYGEGITLAYHVANEKEM
Ga0209086_1018623213300027770Freshwater LakeGDVMSDYLNYLDEVYDDLVAEYGEDITLAYHIANKSEMXGNSHSTDSVSAX
Ga0209086_1027776543300027770Freshwater LakeLMSDYLNYLDEVYTDLVAEYGEGITLAYHQANVAEM
Ga0209354_1024576023300027808Freshwater LakeMSDYLNYLDEVYDDLVSEYGEGITLAYHEANIKEMXGNSHSNTPP
Ga0209400_110228633300027963Freshwater LakeMSNYLNYQDEIYSDLVSEYGEGITLAYHQVNIADMS
(restricted) Ga0247834_109596523300027977FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANVKEMXGNSHPNTPPIIRKCQR
(restricted) Ga0247843_105758153300028569FreshwaterMSDYLNYQDEIYSDLVAEYGEDITLAYHQANIAEM
Ga0315905_1160220613300032092FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHEANIKEMXGNSHSNTPP
Ga0334980_0001533_3637_37443300033816FreshwaterMSDYLNYQDEVYTDLVAEYGEGITLAYREANIKEM
Ga0334978_0070682_601_7083300033979FreshwaterMSDYLNYLDEVYNDLVAEFGEGITLAYHEANIKEM
Ga0334978_0076226_334_4413300033979FreshwaterMSDYLNYLDEVYDELVSEYGEGITLAYHEANKSEM
Ga0334981_0314005_547_6543300033980FreshwaterMSDYLNYQDEVYTDLVAEYGEGITLVYHEANIKEM
Ga0334982_0083180_1412_15193300033981FreshwaterMSDYLNYLDEVYTDLVAEYGEAITLAYHVANEREM
Ga0335003_0297454_187_2943300033995FreshwaterMSDYLNYQDEVYTDLVAEYGEGITLAYHEANIKEM
Ga0335036_0221552_752_8593300034106FreshwaterMSDYLNYLDEVYTDLVAEYGEEITLAYHQANIKEM
Ga0335060_0307958_78_1853300034122FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLAYHVANEKEM
Ga0335060_0557170_226_3333300034122FreshwaterMSDYLNYQDEVYTDLVSEFGEGITLAYHEANIKEM
Ga0335013_0471625_152_2593300034284FreshwaterMSDYLNYLDEVYTDLVAEYGEGITLVYHEANIKEM


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.