3300002097: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1

Overview

Basic Information

• IMG/M Taxon OID: 3300002097
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056901 | Ga0005059
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113674719
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008189	Metagenome / Metatranscriptome	337	Y
F060593	Metagenome / Metatranscriptome	132	Y
F100657	Metagenome / Metatranscriptome	102	Y
F105003	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26620_1001167	Not Available	5767
C687J26620_1008677	Not Available	1680
C687J26620_1033086	Not Available	664

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26620_1001167	C687J26620_100116713	F008189	MDYQAELKRLNEGGNYWKPKVGQYKVKTLTELEEADPFVRKHEGAEDEFSPQAKIIILVNGEEKIWTFGKGKTPASTYGQLIDFATKNNNSLKDKEFTVVVKSDGTKNDYTIV*
C687J26620_1001167	C687J26620_10011675	F105003	MTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL*
C687J26620_1008677	C687J26620_10086771	F100657	MTQITISYTTSVSTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL*
C687J26620_1033086	C687J26620_10330861	F060593	MIYPRLPDDQYKKYLFQARSQIGAILNIFRCYGLEPFVDGAIEECMKITENFAMVVRGKEKPIHILKEPKRRATE*