3300005663: Marine sediment microbial community near Loki's castle

Overview

Basic Information

• IMG/M Taxon OID: 3300005663
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114725 | Gp0115314 | Ga0073582
• Sample Name: Marine sediment microbial community near Loki's castle
• Sequencing Status: Permanent Draft
• Sequencing Center: Uppsala University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 227356065
• Sequencing Scaffolds: 31
• Novel Protein Genes: 33
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Loki's castle hydrothermal vent
• Coordinates
  • Lat. (^o): 73.763167
  • Long. (^o): 8.464
  • Alt. (m): N/A
  • Depth (m): .74

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F008189	Metagenome / Metatranscriptome	337	Y
F008501	Metagenome	332	Y
F023365	Metagenome	210	Y
F024951	Metagenome	203	Y
F033389	Metagenome / Metatranscriptome	177	Y
F035608	Metagenome / Metatranscriptome	171	Y
F041287	Metagenome / Metatranscriptome	160	Y
F044784	Metagenome	154	Y
F045107	Metagenome	153	Y
F047968	Metagenome	149	Y
F060593	Metagenome / Metatranscriptome	132	Y
F071374	Metagenome / Metatranscriptome	122	Y
F079636	Metagenome	115	Y
F085104	Metagenome	111	Y
F086649	Metagenome / Metatranscriptome	110	Y
F089825	Metagenome	108	Y
F091297	Metagenome	107	Y
F092078	Metagenome / Metatranscriptome	107	Y
F092844	Metagenome	107	Y
F094843	Metagenome	105	Y
F094881	Metagenome	105	Y
F098628	Metagenome	103	Y
F099319	Metagenome / Metatranscriptome	103	Y
F100259	Metagenome / Metatranscriptome	102	Y
F105003	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073582_100497	Not Available	30994
Ga0073582_100705	Not Available	23767
Ga0073582_101063	Not Available	18385
Ga0073582_101487	Not Available	14809
Ga0073582_102095	Not Available	11896
Ga0073582_102265	Not Available	11312
Ga0073582_107593	All Organisms → Viruses → Predicted Viral	4878
Ga0073582_108660	Not Available	4417
Ga0073582_112904	Not Available	3334
Ga0073582_115384	All Organisms → cellular organisms → Bacteria	2941
Ga0073582_115818	Not Available	2881
Ga0073582_116161	Not Available	2836
Ga0073582_117384	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2690
Ga0073582_118789	Not Available	2543
Ga0073582_120734	Not Available	2375
Ga0073582_121353	All Organisms → cellular organisms → Bacteria	2326
Ga0073582_123283	Not Available	2188
Ga0073582_123565	All Organisms → cellular organisms → Bacteria	2169
Ga0073582_126955	Not Available	1976
Ga0073582_131785	Not Available	1756
Ga0073582_134048	All Organisms → cellular organisms → Bacteria	1670
Ga0073582_137092	All Organisms → Viruses → Predicted Viral	1574
Ga0073582_137401	Not Available	1564
Ga0073582_140558	Not Available	1477
Ga0073582_150838	Not Available	1258
Ga0073582_154245	Not Available	1201
Ga0073582_166371	Not Available	1042
Ga0073582_166458	Not Available	1040
Ga0073582_166626	Not Available	1039
Ga0073582_166853	Not Available	1036
Ga0073582_170472	Not Available	1052

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073582_100497	Ga0073582_1004973	F044784	MRRGWEVELFNGSILRESDLDWKKVPKNQIARLSLFYDGREWNLSGKEAYFVKYRASVVPGIQESFRVERSIIGFYEGAKKICYHVEESTGKFSLEVIDNSGS*
Ga0073582_100705	Ga0073582_1007058	F035608	MAIADTNAIIVSYLTTSSTKVDPLIALVASRVYCPRLPEKATLPAVGLFTRGGAPNPHIPGILTPSVQFDCWAANSIDARNVYRKLYDALQGIQNVTVGSYQIMSAIEETSGQDLVDVEIPNYFRVLSFFLFMIRAE*
Ga0073582_101063	Ga0073582_1010632	F008501	MKNSAVDLTDLAIGIVVLGIVVSIGATILLNVRDTNTSGDTAYNLADAAAAGLAEYGNWFDIIVIVGVAAVILSLIFMAFGRRGGGTTTY*
Ga0073582_101487	Ga0073582_1014874	F047968	LENIGGGILSPTFIIMERRDIRMDEKVDRHKDKLIRDISVEITVLFEKILDYAEVAVPNNDQYKKLRSKILRHGNNCIRNISKEINMRYDVKYEPTAETIIETRISKQVGI*
Ga0073582_102095	Ga0073582_10209529	F008189	MEYQDELKKLQEGGNFWKPKVGQFKVKALTELEESDPFVRKVKDESGKEIEESTPQFKVKILVDGEEKIWTFGKGKTPVSTYGQLVELATKHVNQLKDVEFSVVVKSDGTKNDYTIVN*
Ga0073582_102265	Ga0073582_10226516	F085104	VPNLGNTDLMELHAVVTPADILVVLEEHRERYIETLGDVKDIYGAQTERYAEAYKKYTQKEIDGDLTEAEKKAKPQEPRMPPDRTKTYDRYIALYKATQVETVYLDEQHFAEFFLDEWDFIRAHISHLRVLRAGGTGTFLNADLSAIAADALSLYSS*
Ga0073582_107593	Ga0073582_1075939	F094881	VLVDMLSGMAGKNRVIKHISFTPTIYKYLRLYRDAEQIVDYDSYTLNGEYPMLVMDLPLAEGQQCKVGFYNSSGATAAIEISVGYEEQG*
Ga0073582_108660	Ga0073582_1086605	F105003	MTNEKGQEVYRKLLYFFENNLKVHFKDLDKIFYNGIIIDLNESKLTLVLRERVRGTIPILLECINPNSIEEFKEVGE*
Ga0073582_109176	Ga0073582_10917613	F033389	MMVVKNSQTKKLAMMKAATARKRGLEASVFKKKKGYGTSITRK*
Ga0073582_112904	Ga0073582_1129041	F008189	LQEGGNYWKPKAGQFKVKSLTELQEADPFIRKIKNEKGEEISEATPQSKIQILVDGEEKIWTFGIGKTPASTYGQLVELATKNANTLIDVEFSVVVKFDGTKNDYTIVN*
Ga0073582_115384	Ga0073582_1153842	F094843	MVACVHVAKILPGKKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDGEALLVTVYEAEDPSVVERFYKLEPVLQQEARAHGVLVVPHDHEAVPKNVAFVDMDLTS*
Ga0073582_115818	Ga0073582_1158181	F060593	MTYSRIPESDYLKLLFQLRGQMAAILNVFNCYGLNNDVTQAVGECVKVAENFGMALRGKSTPIHILTKPKRRVLEDED*
Ga0073582_116161	Ga0073582_1161614	F071374	MMKYKEAFEWLKGERSMTNIVPSQPFETWQVRIAEADAAMMQQAYWIVKAHVDGLLVKGEA*
Ga0073582_117384	Ga0073582_1173842	F041287	MEVCYKCNGPADYICPDCGTKMCRSHAESRYMGADRGLRSRYMCPSCWKKKHTVLNENMQSARTYKSKTYVYAK*
Ga0073582_118789	Ga0073582_1187892	F092844	MAVWNNKMNLIAFFSNKGTPSTGLSPTIDVWKLDGTQSVTAQAMTEIAGGFYYYDFTTYDEDEDYVIRADGTSTLTGADRYVYSTNETAGVGNILKIEKNRWEIKSNQMIFYDDDGTTALYTFDLKTKSDVPTERDVFKRNPA*
Ga0073582_120734	Ga0073582_1207342	F091297	MFTKKRGIQLNQAFGAVLAVVLIAVLVIIAIFLFESLGDSFTALSGAANATDEMITQFGTYPALVGLVGTIVFLGLMIGVLVGSFLFGGRGGRI*
Ga0073582_121353	Ga0073582_1213533	F089825	MNQAIDFPWDKLNVTGDLAVCSRPCVLHSITFNGMTTVGDVAIYDGIDNTGTLIATLILRSAVQVSCQPYTLLLDVEMLVGIFFDYDAGFAGNFTVAFK*
Ga0073582_123283	Ga0073582_1232831	F100259	MAQNYTSGGGTVALYAFEDMDGWAAVPASHTASNETRVPFGQGIEVSMTRNNNAERIWGVGARNATANVNKQYGGTMTISGVLTNAYWLLGVLGTNNDAGSPGAYTHTYTEDDILPSFTTDLGFELGTTDFESEVIGCVVNTCIISAAVNEALKFSLECSFRYENLGTAKSADIVDVEPVFTFA
Ga0073582_123565	Ga0073582_1235654	F086649	MPNPKMEALNKTSSDKQIQEAISAEVQTCMGEPGAEQKACAGKAFGIARQKTGKALDLGR
Ga0073582_126955	Ga0073582_1269554	F079636	TAADGTVSTLGETQILGFDLSVNDSLVMPIRKEYEAHDDPTLLRVQKAGFFGWEEIGFACLDPRMLGMGIIDRSL*
Ga0073582_131785	Ga0073582_1317856	F008189	VALDFTNSIELKGGKKVKMDYQKELKRLQEGGNYWKPKAGQFKVKALTELEEAEPFVRKKEGEEDQVTPQAKMKILVDGEEKIWTFSIGKTPASTYGQLVELATKHANQLEGVEFSVVVKFDGVKNDYTIVD*
Ga0073582_134048	Ga0073582_1340481	F024951	AIMRKVTVKLEMRVVMSVDEGVEISDVVNELDYQINDTTSTADILDTEITDYEVIDSK*
Ga0073582_137092	Ga0073582_1370924	F086649	MPNPKMQALNKNSTDPQIQEAISAEIEQCMSEPGAEQKACAGKAFGMARTATGKELNIGQ
Ga0073582_137401	Ga0073582_1374012	F092078	MATSRPKHNRQSILQLKEMAHVQEALVASAEAQQRAGKPFDIFRPIRETPLSVFFDRSNPNGFEEGKLNPNLPTIWKHRYGIRIGDEARGNMRIAGKELRETVSVPNTLSALKIADEILEGAEPWSDWKQYARLIDMDSPKVNVPLTKYTDTVGGSPTDQKGLDIYKEAGGVPPAIGGKVTTVELDTSGTNNSFRGTISVNRNDVKDNNFLAVEQSLKNAGNEFYFMVGKKIIDVLVNSTIVPTATKAALATVTPVQEELEALVEVIRSRFPGVQRNRADTMFINPADAALTVKTA
Ga0073582_140558	Ga0073582_1405584	F091297	MELRKIEAKPKKGIQLSQAFGAVLTLVLVSVLVIIAIFLFVTLSDSFTSNSAQANASNAMVTEFANYTSLIGLVGTIIFLGLVIGVLVASFAFGGRRV*
Ga0073582_147336	Ga0073582_1473362	F023365	MANLGEITEIVNASELTLELASDIYIMLKDLQIHIGRPEDRTATTDAGVLYTYGKGDNFFTATLVVTTPEISSLDTLTILDSDGDMPTQAWKIVARDLAGATKTFAATGVLREYDVRKPEEGKAEIDIFVRIIGDTITIS*
Ga0073582_150838	Ga0073582_1508383	F092844	MNIIAFFTEQGIPKTGLSPTVDVWTVDRSQVVTAQTMTEVAGGFYYYDFTTYDEDEDYCMRADGTATLTGADRYVFSTNETGGVGKILKIEKNKWEIVNNQMIFYDDDGTTALYTFDLKTKSDVPTERDVFKRNPA*
Ga0073582_154245	Ga0073582_1542451	F045107	MGPPIPTLAELSRFAEEAKAQRKATAEKLLIDRVMTREELIKLCLLSENDVN*
Ga0073582_166371	Ga0073582_1663711	F099319	RIRGVTIMVSSKPKHNRQSILQLKEMAHVQEALIASAEAQQRMGKPFDIFRPIRETPLAVFFDRTNPLGFEQGILNPNLPAIWKHRYGIRIGDEARGNMRIGGKELKETVSVPNSLSALKIADEILEGAEPWSDWKQYARLIDMDAPKVNVPLTKYTDVVGGDPANQKGLEIYKEAGGTPPIGGKVTTVELDTSGTNNSFRGTISVNRNDVKDNNFLTVEQSLKNAGNEFYFMVGKKIIDVLVDSTVVPTETKANLANATPVQEELEALVEVIRSRFPGTQRNRADTMFMNPSDAALTVKTASTGGFYPFFSRFELGPTDDTDVINNSGLAQSLGLRAVWETPQIEA
Ga0073582_166458	Ga0073582_1664581	F099319	ETPNPFLPSLWKDRYGIRIGEMAQGNAYGGGYALKETVSVPNSLSALKIADEILEGAEPYSAWKQYSRVIDMTTPKVNVPITKYTDTVGGSINDQKGIQIYKEGGTGTPPAIGGKVETVELDTSGTNNSYRGTLSVERNDVKDNNFLAVEQSLKNAGNEFYYMVGEDLITAQVAASTNTATKASLDSATPSNSELEALIQVIRGEFPGSQRNRADTMFIHPLDAALAVKNAGANGEYAFISRFMLGPTDAADVVNNSGLAMALGLRNVWETPQIVQGTVLITKRDINQVVGLREDLTIENFDLSVGGLYESDLVIRYDKKAAHADVGSFTITDFNV*
Ga0073582_166626	Ga0073582_1666261	F100259	AQNYLSGGGTVALYAFEDMDGWALAAASHTASGETRVPFGQGVEVSMSRNNNAERIFGVGARNATATVNKQYGGTMTISGVLSNAYWLLGVLGANSDGGTSGAYTHTYTEADILPSFTTDLGFELGTTDFESEVIGCVVNTCTISAAVNEALKFSLECSFRYENLGTAKSADIVDVEPVFTFAHGSIEMPDGTTIAAVQSFELSIVNNAESVYGVGSRFMTAVVAKNGEYNLRGDKAACEGMSKEESQKARYGKSLANAWFHNPITKIVYFCDELSTFESRAAGESA*
Ga0073582_166853	Ga0073582_1668531	F007072	ILSAKKKGQLTLGDAPTVVLLVGLVFLVMATIAFIGEKYQAAMTTDSVAYNVTRDLQTEIGNNTSIAGIVLTIALVGIVLTILIGVFMGVQGAGGRRI*
Ga0073582_170472	Ga0073582_1704723	F098628	DIYVPLDACTCEWDKFMNRIFMVLTPYIKHIDFETKNLNSNDARRLNIRSNCVVINGEQKIPSSVLLKKELPKLLKAKGLI*