3300003680: Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003680
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0069861 | Gp0055798 | Ga0003069
• Sample Name: Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29777988
• Sequencing Scaffolds: 38
• Novel Protein Genes: 38
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	3
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → anthropogenic contamination feature → contaminated water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -73.604444
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F002175	Metagenome / Metatranscriptome	587	Y
F003877	Metagenome / Metatranscriptome	464	Y
F005048	Metagenome / Metatranscriptome	413	Y
F005374	Metagenome / Metatranscriptome	403	Y
F005443	Metagenome / Metatranscriptome	400	Y
F005632	Metagenome / Metatranscriptome	394	Y
F008500	Metagenome / Metatranscriptome	332	Y
F010923	Metagenome / Metatranscriptome	297	Y
F014210	Metagenome / Metatranscriptome	265	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0003069J53074_1000760	Not Available	685
Ga0003069J53074_1000885	Not Available	580
Ga0003069J53074_1001418	Not Available	586
Ga0003069J53074_1001662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	841
Ga0003069J53074_1001889	Not Available	502
Ga0003069J53074_1004200	Not Available	642
Ga0003069J53074_1004754	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	3472
Ga0003069J53074_1006916	Not Available	964
Ga0003069J53074_1008023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum	594
Ga0003069J53074_1008698	Not Available	1032

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0003069J53074_1000760	Ga0003069J53074_10007602	F017604	MSKGCDGAAGDTSGDNPDPETPVRSRGQAARKGGRERGRGHEETRSPTR
Ga0003069J53074_1000885	Ga0003069J53074_10008851	F041210	MLPGTPQLLSLMEPATRNGLSLAHNGCPLSRASIPGSTVLACYFAACQLASSPGPPSAPLPPRGLPHERPLRRFRPVAIPPAGSIGCFPGLHSPPGLLHPSGSKRSTGSATARLAFRTRPIPFRSPQPVLFLGLATDQRSRVATFPEACCS
Ga0003069J53074_1001418	Ga0003069J53074_10014181	F085747	FQVICLAAKLSAGMPGTELREQNRRTVSGLLPGTPFRAHRINAPRAVCWPNSVRSRRFVAVFHSLGTTACFQAPIPRSKLPACYFNALPNRSSGPFDRSLPRPNRFAPGSVGLNACGPFPGLRLSTSESASNLHSPLGVLAPAGSKRSIRFGSEKPTFRLRPIVLRSPQPFYCVVPVADHRSELATFPEVRCSSN
Ga0003069J53074_1001662	Ga0003069J53074_10016621	F001758	VTGERLSQAGWLSSSQAGSQGAAAEAEFTSSSGDVRASSVHAKKGLSEEER*
Ga0003069J53074_1001889	Ga0003069J53074_10018891	F052605	WTAAGKINVVRFRIIPGDWGKVGSGWLTQLLLTEPQGTAEAEFTSSSGGVRTPSNANEGLGSEKR*
Ga0003069J53074_1004200	Ga0003069J53074_10042001	F091449	ASLQHMRHRRYAFHGLCLPATFRLQGLATLLAVYSLRSRAGFVSHRPRSWDLPFGAFSSWKVTGRFRLGRTHIPFTRRYTLAPRCRGRLDKPQFLGFDPSESSWQSDVCLIRRLLVAPLGLTLPGYLTKALTRISPSLLSRASQQGLRLTAGASEFRSAFAPPHPPA*
Ga0003069J53074_1004754	Ga0003069J53074_10047542	F014988	MAFAPPALITGAAVTGLTTPTYIIAVDTPPAINAKQYAVTALGGTQTGVDVNTVSKPFSISFFRPVQLRSLPAANPVTGVIKNIPMNQYKLITRKGAQPSANTPAMTARITTTIEVPAGSDTYEPEEIRALISSHFGVGFSTASGIADTVLTGVL*
Ga0003069J53074_1006916	Ga0003069J53074_10069161	F025432	GYLSYHMRSNLFQQSKGASDPTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGAPAGGQGQFIHTGVAAWVKDRLVAQLAVAPGVDNLDYKRMNYGVVLGVLPMNTDGMWLMPTFSMLVGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGTTWRVWYDRTYGINAGINKRLKYDFTDASGVVHPVPSDLGYNVLLVYRQAMNFAWEFGF
Ga0003069J53074_1008023	Ga0003069J53074_10080231	F003877	PVHTAVRNCTGDEGGPFGFGDQVVDPKPPRAAAVKSRGGERRGNVGAMIPTGMIERGERKRTASEASKAD*
Ga0003069J53074_1008698	Ga0003069J53074_10086982	F081898	SDTGRGDFHFGGSGRAPGGPRLVAEPGLPSREVAAPCRVLSLETLAPSLLRRSPHALCLRRLGARVFTLQAPEKHVRSSRVPLMGFGSSTEAAQAPSRCLEPLVSQAPDAQLQPDAN*
Ga0003069J53074_1008929	Ga0003069J53074_10089291	F035541	GDVACSLGYIRSKGMANHRATTIRRSDVKRLALIFTLAILAGALMVPAANAQSNLTNLNNIPVTDTLAVGTFEWDVWSGYNKGFERGRRIGTRLFGSLYDNLEFGMKWGISRTAGPVELALKYKVIDEYNGRFPVSLAVGVEGITGNSQRTHFDPTVYAVLGIHDVKFIGHWWDWYVGVNHNPTGMDTEDNSLFGGFKYWINDDLQFIADYMGYGDNEWYKLTGGFNYNWINHIGFQGWVERDSLAETNVFVLEMAVRADMRDLTAEVSDPE*
Ga0003069J53074_1009000	Ga0003069J53074_10090001	F062539	MTRQLPSLTGPQWIQGQSPRLIPLWLQGPSCLPFSLSWQSFTMSRALHPGIRLLRCLRPPSHTLAFSRPLTRQGGIGVPQFQDIRRIEIPLAACCRPGANGTTYRHASPVGTRHHPFWARCISHFHLSALTISTQVSCVSIGIRAGWSTSLWLEVAILLSLGFPPPRVPLVNAGQVALTPLFMCNPLNRLSICPVKGRT
Ga0003069J53074_1009142	Ga0003069J53074_10091421	F005048	KFEHTSPKAEDCLQDFVVETFARAKADDGLIALVVEPRHVERQGLVRTLRELGHRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGAFS*
Ga0003069J53074_1012044	Ga0003069J53074_10120441	F005632	RHVLEGGFGAVEVSPWRAVAVRTEYDTEKWNVGVGVALPFGLRLRAAALNLETLSAGAGWTHEL*
Ga0003069J53074_1012558	Ga0003069J53074_10125581	F010923	EQQAGENVAALER*SVTHNLKKERVAGSEGESGGFARRTGRQQMPLNTLIPGDVTVPRGSGDGGGGRLNRMVEVQRA*GDEAAVTGANRDTVVEQKGRTGTEAIWKGAK*
Ga0003069J53074_1012732	Ga0003069J53074_10127321	F014210	MRWLKGAVVLAALGVGIAQVASARVPAFVRQTGLVCNQCHVTWTPTPDLTFTAVKFRMNGYRTPWVAEKIEAGQEGALGGRRLLLGVTGYLSYHMRSNLFQQSKGASDPTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNF
Ga0003069J53074_1012803	Ga0003069J53074_10128033	F025292	MAFGLTSPLTGAAQTGFTAPTYTLTPDTAPDVNGKQWAVTALGGTQTGVTTHSVASPFTQSAFRPKNFKVLGKTNPVTGLVSNVPMNTHKVITRKGVLPLSGQPYKNLNITTVIDIPAGSDTADPANVRAAFSAHIGALYQQAAGLGDTAITGIL*
Ga0003069J53074_1012952	Ga0003069J53074_10129522	F005443	MLNNTLNTNEVKNSANAEQEFTRLSVNDRSTVFALISELPSLPHRLSIQHSENGTGFKKRRRSVVRVDKTIVSTVDSITPVTISAYCVMDIPVGAIAAMTEPTHVIANLMSFLASAGASTTILYDGTGSGATALLNGSL*
Ga0003069J53074_1013581	Ga0003069J53074_10135813	F014988	MSFAPSSPVTGSSVTGLAAPTYTFTTDVAPTVNGKQFAVTTLGGTQTGVATHAVSNPFSVTFFRPANLRVLPPQNPVTGVVKNIPMNTYKFITRKGVSPGANLPQMVARITTIIEVPAGADTADAVSLAAMLSAHFGVGNAQASGIYATVTSGII*
Ga0003069J53074_1014979	Ga0003069J53074_10149791	F005632	HVLDGAFGAIEVSPWRAVAARFEYDTEKVNVGLGVDVGFGLRIRAAALKMESLSAGVGWHHKL*
Ga0003069J53074_1019189	Ga0003069J53074_10191892	F022154	LYDVYRFADLSGVRNAMKKALAGVLAVALAGVMAGSAMAQVPNVQVYFDGAYTQTQRNCPGYAPFTTPDSLYVVMNNWNMNITGVDFSIQYPPALVYLADKAPDPILSVTIGQSPTGIAISWANCCPPDGFLPVLALKPLVMWGVCDCNQGPQAIVVGGYTPFGKTHPTAIRREDFTEHDGVGMTSLICPGFIAVQPSTWGQVKALYR*
Ga0003069J53074_1020720	Ga0003069J53074_10207201	F060086	DPFELDSSLLLSSGRLGEDVRGSTSYDHETPLLVDLADLLYNGIA*
Ga0003069J53074_1023029	Ga0003069J53074_10230291	F069751	VASGQRTAKSSGRPGAGGRDADESHKRVFTRFANRRCKRQLKQAKRPHSKSSVRKVLDGPATRPITPLAVENSVGES
Ga0003069J53074_1025343	Ga0003069J53074_10253431	F087252	MAISHPAVSTAQATTKGSAKIDAQLLDKLAKLWTAHNTRSLAIRLETGSLLNARLGQPTQRQRRGGSVLKQAAETLHTAESELNRMRWFAYFSNDEQSCWGETPPGSRTWTQFKERLPSLIAALKGDEKRKRFSGDKKPAAVIDGLLRLLSSATSKLRADDFTVDDTDKEKLIGRLRDFTSAISKRFGVRFLVETEEDGTHSLLETVAVPDCETDFALSSCPMDTVAV*
Ga0003069J53074_1025572	Ga0003069J53074_10255721	F099149	MLVGVLITIMISIVVGLALTPTVITAVNTAKNPTGVTLPTGLSGMLDVVSYVFVAIILLGAVAWIGGQS*
Ga0003069J53074_1026081	Ga0003069J53074_10260812	F020183	MSIVFNTKTYTADSYQKDQVGYIGAAKTVTVKDDFRMLRTAPKPVATFSGLGRTSVKLTRTFTLTGALTPTGDAIIEVSVAVPVGYASADVDALLNDVGALVSGADMKSHVKTQKISY*
Ga0003069J53074_1027022	Ga0003069J53074_10270222	F017604	MSKGCDGAAGDTSDDNPDPETSARNRGQAARKGGRERGSGNEETRSPTRRESGDGSAEDQGRS*
Ga0003069J53074_1027823	Ga0003069J53074_10278231	F057498	DEVREIALANAINSGLNADEVEQLRNVYPSAAEFARIVEGDSQGFYQNALARANVAREGADPMSAVFFRFDQDMSLEDAAGDLGLTGPDLDRNLNQLNPQLSVLHDGRLDRDDFTQFYVDSLCTLLIVAENTVDPNLCADVQANGGIVP*
Ga0003069J53074_1028592	Ga0003069J53074_10285921	F005374	MRSLRLSAVVLSIAVAGFSAGAYAQVRTTPAGKLFFEGDIVRHALDGQQGPFCVLQNQYKRGEAVAWRIRVQKPDGTPADGAYLKSVEVQLGNGQKLPAHFGGHGMPPTDFFWSLFWTIPGNFPTGSLGYKVNATMQDGSVVTWEPFTRATTQLMVIAGDPTPAASKQ*
Ga0003069J53074_1029170	Ga0003069J53074_10291701	F008500	NGMLGFIIADENDVIVEDSDILLDTNQNNFRAITSVSCSNCHASGFIPVVDEVREIALQNAREIGLDRDEVEQLEGIYVSPQEFSRQVQEDSQGFYQRALQLADLPIQGGDPVSSVFLRFDQDLRIADAAGDLGLTPDDLADNLDLLDPVLSVLDQGTLDRDDFTNVYIDSLCRLSTPLENQPDVAVCDAAAALLD
Ga0003069J53074_1029207	Ga0003069J53074_10292072	F022154	MKKALAGVLAVALVGVLAGSAMAQVPNIQVYFDPAHTQTQTTCGTAGPPVSLYVVMNNWNFNITAVDFSIAYPPSLIFVADVLPDPLTSNMIGVSPTGIAIAYANCCAQDGFQAVEVDRPLVIWGPCDCNHGPQPVVVGGYTPLGKTQPSAVRKEDFLEFAGLGMTSLICAGEIATEPTTWGQVKALYR*
Ga0003069J53074_1031203	Ga0003069J53074_10312031	F031396	MRNRWKAVLVAGASLAIMVAAIPVMAGIPDAANSYFVPQSGTTTTPAEGTAATRFFRMCPNNDGGASLPNNARIKVVVKDVNNNPIPNIAAADICVLLNGGTSAQGFSGSGADSVISNSTWNSSPLCPDVRCVAADAPTDVNGVAYITFGGADVNTPGVYVRSGNRKWGHYDTLLPVYCLGFQLSGRLTSASANGTYTLRIKNFDWTGGLTAAANQGEAVIGTDFNGVANGINVNNAISYWKDFDYSGTVT
Ga0003069J53074_1035246	Ga0003069J53074_10352462	F017604	MSKGCDEAAGDTSDNNPDPETPARNRGQAARKGGWERGRGNEETRSPTWRESRDGCAEDQC*
Ga0003069J53074_1037158	Ga0003069J53074_10371581	F092888	VHEQGKLEQNQNLFALRVRRTSGTISFLAIGISFTIVSLILIQAMVSGQPAWYRAAYEPVSSLAIAAVGYLGFLTSWKETSITVSGLDKRFTATTRNLFTRTSTKREVTFSEIQAMDSKVDEPTNTVKVTIARDNQEAIQFQLDCNSYGPLEKYLKTLLPKIPVITRETRNYEADMLLGHVSAVY*
Ga0003069J53074_1037855	Ga0003069J53074_10378552	F002175	MAILTSTPGADNKVSIYDVPDSVLSQYAITGDKAAAMFPESKATSGAEIPQSGGANAVKVENAESLGEVQAYSSICVCRELLCNAYGCWWHYYYCYC*
Ga0003069J53074_1043825	Ga0003069J53074_10438251	F079349	MTLLKASRMPLLAGLLCLLLLGFAGASYGAVRFDVVSSPTEVINTGRSEVTGSVNFIVRGTGNVTGTSTGGNTQIGLIYTNPAMQIDNTTSSGIKIVYSPGFASAIPTIVLVENFDLNGRCTGRITVNLVAGAVPVEGDFIRVEAVRGRIDGSLAVTPGTDLYVDLQSINDPAAANFTPDRVRVAKSLDGMNVEIVPDTLLLCFPTTGRPPEGTDWPSYYIR
Ga0003069J53074_1046056	Ga0003069J53074_10460561	F058016	MNIDHRNPRLRRGFAFVALAALLGLSVFALSQCRMVNDTVTGVDLKANQTVSARSDCVHKCNEAYKACKKAESARHKAAQRACHSDKACKKAEEKLHKDNQN
Ga0003069J53074_1047540	Ga0003069J53074_10475401	F005048	APLALSAQVRRSDSLSMGLKFEHTTPKAEDSIQDFVVETFACATADDGRVALVVEPRHAERQTLVRTLRELGRRAIGVSTALDAVRLLVEEGEHVDTVFIEVESESLPSLELVEFLSHNHPRIRRVLIGDPSQIAASWVAQATGEVHALLETPCDPEDVHRVLHRLQFTPNDAELS*