3300028620: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028620
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0297566 | Ga0257139
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135356152
• Sequencing Scaffolds: 25
• Novel Protein Genes: 27
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F004178	Metagenome / Metatranscriptome	449	Y
F016493	Metagenome / Metatranscriptome	246	Y
F019930	Metagenome / Metatranscriptome	227	Y
F022812	Metagenome / Metatranscriptome	212	Y
F024682	Metagenome / Metatranscriptome	205	Y
F026446	Metagenome / Metatranscriptome	198	Y
F035608	Metagenome / Metatranscriptome	171	Y
F042912	Metagenome / Metatranscriptome	157	Y
F046170	Metagenome / Metatranscriptome	151	Y
F052683	Metagenome / Metatranscriptome	142	Y
F064398	Metagenome / Metatranscriptome	128	Y
F071959	Metagenome / Metatranscriptome	121	Y
F074370	Metagenome / Metatranscriptome	119	Y
F083361	Metagenome / Metatranscriptome	113	Y
F083597	Metagenome / Metatranscriptome	112	N
F083668	Metagenome / Metatranscriptome	112	Y
F088317	Metagenome / Metatranscriptome	109	Y
F098292	Metagenome / Metatranscriptome	104	N
F099149	Metagenome / Metatranscriptome	103	Y
F102405	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257139_1004648	Not Available	2493
Ga0257139_1004832	Not Available	2452
Ga0257139_1006686	Not Available	2107
Ga0257139_1009532	Not Available	1786
Ga0257139_1012251	All Organisms → cellular organisms → Bacteria → Proteobacteria	1579
Ga0257139_1015742	Not Available	1387
Ga0257139_1017038	Not Available	1328
Ga0257139_1018469	Not Available	1269
Ga0257139_1022410	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1136
Ga0257139_1026672	Not Available	1028
Ga0257139_1029800	All Organisms → cellular organisms → Archaea	961
Ga0257139_1031703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	925
Ga0257139_1039399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	811
Ga0257139_1040038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	803
Ga0257139_1040638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	796
Ga0257139_1040972	Not Available	792
Ga0257139_1047126	Not Available	728
Ga0257139_1047377	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	726
Ga0257139_1050899	Not Available	696
Ga0257139_1052446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	684
Ga0257139_1053111	Not Available	678
Ga0257139_1070638	Not Available	572
Ga0257139_1070785	Not Available	571
Ga0257139_1071493	Not Available	568
Ga0257139_1087698	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257139_1004648	Ga0257139_10046486	F035608	LTPLLATVTSIYCPRLPENAALPAVSFFTRGGGSTPYIPGIPEPSVQFDCWANNPIDAREVYRALYDNLQGIQGKVVTVGPPTEIIWSAIEEVQGQDLVDMEIPNYFRTLAFFRFMIKAE
Ga0257139_1004832	Ga0257139_10048323	F026446	MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKKHR
Ga0257139_1006686	Ga0257139_10066861	F046170	MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQATQRSYQPEFNKTMAW
Ga0257139_1009532	Ga0257139_10095321	F046170	MIRIEDFGEIGYGGVVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKALGTTSKRGSESSAVQEAQRILNERMRAKALTQGSGIPAERSYQQEFETVAPHAF
Ga0257139_1012251	Ga0257139_10122512	F088317	MPGPEDKVNYPPTPKIPQEELNKTAPKTRKDHYEGIKAPPIPPLEKSQILKAIESGFKVAEESSRYVMTPPPELPYRILSLRTKYVSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDVYASFAYSEFRSAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDERVRIQLYKGLPVYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPDYK
Ga0257139_1015742	Ga0257139_10157422	F071959	MASRNYLINSNDMTLTDKKEYRTKALAAGLERCGQKNIGNVNADIPVLAGIPPANMEARVAEIKAHIETGKWPKTIDQRELAPLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDAAVLPVSRLIFRRGSAVGNIQAQFDMQPLGPRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGAVIA
Ga0257139_1015742	Ga0257139_10157423	F046170	MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKAMGSSSKRGSGAESRAVQEAQKILQERMSAKALTQGRTAERSYQREFESVAPHAF
Ga0257139_1017038	Ga0257139_10170383	F074370	MADKMAEKLAEAKKKMFGAQQPSGKIIILVKGDSLIKSADPKVEVRQQE
Ga0257139_1018469	Ga0257139_10184693	F102405	MAQEINLLDPLGVAKMVRGQLNTMAIQANLPQIPEIPSIKMEMAGLPLLNKWAPIPERPGMSRGERAG
Ga0257139_1022410	Ga0257139_10224101	F022812	KLAFGPQTLDIAYLPLRHDFLAKNVLMTAQRDFPLGNSQLTAQNQPTPFA
Ga0257139_1026672	Ga0257139_10266722	F016493	MGWFSDKVEKFRQVPNPYFFLHIGARFLFGVGLGLLLATWLPVWTGWVFIGAAVLIAIPSTRIIFRG
Ga0257139_1029800	Ga0257139_10298002	F024682	LNAEDELISKLKQEIGKTLPPMFSGMAENMLESNKDVIINWLKENKDLVKEVIES
Ga0257139_1031703	Ga0257139_10317031	F088317	MPGPEDKFSYPPRPTLTQDDVNKTRPTTRRDAYEGVKTPALPPMDKSQILRAIESGFKEAENPARYVMRPPADLPYRVLPLNTKFYSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYGEFATARARGQFKNAPNCTAREIGTFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIHCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPDA
Ga0257139_1034368	Ga0257139_10343681	F083361	VNVHLDLSGCTLSTEQQAVVDALNEFLASLPDDDDSDVALRLAMDILEAADVAPQTVLAEAAGFTQARSVRVYKQRLREEGLAGLFDRPIPGRPAVTTQTPVEKAVYQVILSALIEEHALPDDATLAERVNQALRGARVPEAGLVTSSMVETIRLHWDIQRPAITQQLQAAQSSETCETDTVRLGQTHVGGAFILAILLLEAGWLKMAHLLPMAPKYAVTATQWLLTAIFSVIYGVRRAFHLDDVRDIGFALVTGRP
Ga0257139_1039399	Ga0257139_10393991	F000344	MRPKHPPAAESGVGKHTARESERVQACATGKERVTSAH
Ga0257139_1040038	Ga0257139_10400381	F088317	MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQILRVIESGFKEKESIGRYVMTPPPELPYRILSLRTKFVSCNTRHLKEIGAFRTLLPELFGEPGYKAVDDAYASFAYSEFAAAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDDKVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDYK
Ga0257139_1040638	Ga0257139_10406382	F004178	MRPTAPHAAESSVGKHTARESEAPNVCEWERARGER
Ga0257139_1040972	Ga0257139_10409721	F019930	MVKVKAPDQMNPGKVIEGEYPYHTKDSILNLLFIRDLQLSGAELVKQNVLAMKLETCKDDEILLEDEEYNRIKRAIDTFKGFGRNDVGLVTRINEAEVVEVKTK
Ga0257139_1047126	Ga0257139_10471261	F035608	MAIEDSNRIIKDYLLACGSLTPLLATVTSIYCPRLPENAALPAVSFFTRGGVNNPYIPGMLEPSVQFDCWAGTPIAARKIYRALYDNLQGIQGKVVTIGPPTEIIWSAIEEVQ
Ga0257139_1047377	Ga0257139_10473771	F064398	VKTVTLKKLCVMALCTFLLTLAFSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQAYPGENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNIKIPDNISPGLTYGEVSCEWEALGASFEILSSGFVLAYVKNIALEQLQAEYDELNATHQSILQENTELKSGINEDADSTRNLMYVFIATTVVASITVFVLLMRKPKKVWV
Ga0257139_1050899	Ga0257139_10508991	F083597	MKQEFVNWKIFIWAIAIILGLFSISYGMIANAQLKAESAYNNIYQIRTDIEVIKTDVSWIKNNI
Ga0257139_1052446	Ga0257139_10524461	F088317	VTSADVNKAAPKTRRDHYKGAQAPPMPEMDKSQIMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGDAGYKAVDDAYASFADGEFRTAQSRGMLKNAPNCSLQEIAAHIRTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPRHCPYDVREGDYRLCAATAGYERELVKMCNPRYRAYLSRTKAIGDDCCELTIDVDPDNK
Ga0257139_1053111	Ga0257139_10531113	F083668	WTPDKITAMVLVIGCLALIFTGIDGEVKSILTLSAGWLFGGAYIAAKTK
Ga0257139_1070638	Ga0257139_10706383	F042912	MKWTPDLVIAFTLIIACVVLIAFRIDSEVKSILTVASGWVFGTQIQTYRAKGNCNAIKGGEK
Ga0257139_1070785	Ga0257139_10707851	F099149	MLVGVLISIMISIVVGVNLIPTILTSINTAKAQATAIGGFSGLSGLMEVLAYVYVAVILLGAVAWIGGQT
Ga0257139_1071493	Ga0257139_10714931	F098292	MSDVTRRIERWQKKYSPAQAKATLDLLQEGMRQRYEAATTEMAAMELKVKEVLNAQGVHTTNYVPYLSYARQLWKLGRQQHITGESFAMASEVLLQKWAGRGQDPDVLAAIRTQVFNSPPPAP
Ga0257139_1087698	Ga0257139_10876981	F052683	IYRAKIFLETRGGKKMRNILDRKKTLGERSREYFSEKKGIMGPIISVFVLVLIISILSGLTFLFVGQLKSQVSETATGGEDSTAYQAVNDTEAAGATVVGYLPLIFLAIIFGAILTLVLKIILPYINLGQQMGGGF