Metagenome / Metatranscriptome Family F097482

Basic Information
Family ID	F097482
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	52 residues
Representative Sequence	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILL
Number of Associated Samples	37
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine (65.385 % of family members)
Environment Ontology (ENVO)	Unclassified (96.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.192 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.43% β-sheet: 0.00% Coil/Unstructured: 21.57%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00753	Lactamase_B	23.08
PF04760	IF2_N	6.73
PF12706	Lactamase_B_2	5.77
PF09903	DUF2130	2.88
PF07521	RMMBL	1.92
PF04675	DNA_ligase_A_N	1.92
PF04679	DNA_ligase_A_C	1.92
PF02574	S-methyl_trans	0.96
PF01612	DNA_pol_A_exo1	0.96
PF02599	CsrA	0.96
PF00830	Ribosomal_L28	0.96
PF00271	Helicase_C	0.96
PF01019	G_glu_transpept	0.96
PF05099	TerB	0.96
PF10458	Val_tRNA-synt_C	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.85
COG0227	Ribosomal protein L28	Translation, ribosomal structure and biogenesis [J]	0.96
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.96
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.96
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	0.96
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.96
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	87.50%
Unclassified	Environmental → Aquatic → Marine → Unclassified	7.69%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.85%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.96%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	74.04%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.46%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	65.38%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	8.65%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.69%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	6.73%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	4.81%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.85%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	1.92%
Volcanic Co2 Seep	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001953	Marine microbial communities from Key West, Florida, USA - GS015	Environmental	Open in IMG/M
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300002955	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV	Environmental	Open in IMG/M
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental	Open in IMG/M
3300005465	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0025m	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006337	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0025m	Environmental	Open in IMG/M
3300006345	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m	Environmental	Open in IMG/M
3300006350	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m	Environmental	Open in IMG/M
3300006351	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m	Environmental	Open in IMG/M
3300006413	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m	Environmental	Open in IMG/M
3300006478	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0125m	Environmental	Open in IMG/M
3300006480	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m	Environmental	Open in IMG/M
3300006481	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m	Environmental	Open in IMG/M
3300006842	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0025m	Environmental	Open in IMG/M
3300007041	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic	Environmental	Open in IMG/M
3300007325	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007329	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007601	Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007605	Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011311	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_A metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300020368	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)	Environmental	Open in IMG/M
3300020380	Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)	Environmental	Open in IMG/M
3300020402	Marine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020456	Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)	Environmental	Open in IMG/M
3300020466	Marine microbial communities from Tara Oceans - TARA_B100001540 (ERX556059-ERR598968)	Environmental	Open in IMG/M
3300027774	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)	Environmental	Open in IMG/M
3300031785	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2231_10244872	3300001953	Marine	LISSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILL*
GOScombined01_1032674111	3300002040	Marine	LISSQNYISFNEANLANYAHACFDKAMAEIVSKAITTNLYS
GOScombined01_1033440772	3300002040	Marine	LFSVQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQSIMNELFC*
GOScombined01_1035741842	3300002040	Marine	LFSSQNYINYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKEILLDDTIFFLFIMLWF*
JGI26062J44793_10010935	3300002955	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKE
Ga0066830_101167601	3300005433	Marine	LNAVNLANYAQACLDKAIAEIVSKAITTNLLLQLIMNILILLVGT
Ga0068474_1173263	3300005465	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDGKIFSSLII*
Ga0068474_1180931	3300005465	Marine	LLSSQNYISYNEANLANYAHACFDKAIAEIVNKATTTNLLLQLIMNELILLKET
Ga0066825_101983071	3300005510	Marine	LFSSQHYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMN
Ga0099675_11889242	3300006334	Marine	LFSSQNFISFNEVNLANYAHACFDKAIAEIVSKVITTNLLLQLIMNELILLKETLLDGTIFS*
Ga0099675_14294422	3300006334	Marine	LFSSQNYISYNEVNLANYARACFDKAMAEIVIKVIITNLLLQLIMNELILLKETLLDGSIFF*
Ga0068495_12175643	3300006337	Marine	LFSCQNYISNNEVNLANYAHACFDKAIAEIVSKAITTNLLLQLIMNELILLKETLLDGTIFC*
Ga0068495_12180521	3300006337	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNKLILLKETLLDGTIFF*
Ga0068495_12498222	3300006337	Marine	LFGSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLLLIMN*
Ga0068495_12581732	3300006337	Marine	LFSSLNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLNGTIFFLFII*
Ga0068495_12604583	3300006337	Marine	LFSSQNYISYNEVNLANYAHACFDKAIAEIVSKAITTNLLLQLIMNELIFLE
Ga0068495_13533952	3300006337	Marine	LFSSQNYISYNEDNLANYAHACFDKAIAEIVSKAITTNLLLQLIMNELILLKETLLDDTIFF*
Ga0068495_13657863	3300006337	Marine	LLSSQNYISYNEVNLANYAPACFDKAMAEIVSKAITTNLLLQLIKNELI*
Ga0068495_13706651	3300006337	Marine	LFGSQNYISYNEVNLANYAHACFDNAMAEIVSKAI
Ga0068495_14030821	3300006337	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTKDGRE
Ga0068495_14758951	3300006337	Marine	LFSSQNCISYNEVNLANYAHACIDKAMAEIVSKAI
Ga0068495_16315282	3300006337	Marine	LFSSQNYNSYNEVNLANYAHACFDKAMDEIVRKAITPNLLLQLIMNELILLKETLLDVTIFFL*
Ga0099693_11531271	3300006345	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITT
Ga0099693_11894211	3300006345	Marine	SSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKKLF*
Ga0099693_12336732	3300006345	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVIKAITTNLLLQLIINELILLKENLLDGKIFFLFIM*
Ga0099693_12361023	3300006345	Marine	LFSSQHYISCNEINLANYTHACFDKAMAEIVSKTITTTLLLQLIMNKLILLKVTLLDGKILI*
Ga0099693_12566581	3300006345	Marine	LNAVNLANYAHACLDKAIAEIVSKAITTNLLLQLIMNILMLL
Ga0099693_13519171	3300006345	Marine	LFSSQNYISYNEVNLANYAQACFDKAMAEIVSNAITTKF
Ga0099693_13653592	3300006345	Marine	LFSSQNYISYNEVNLANYAQACFDKAIAEIVSKAITTNLLLQLIINELILLKETLLDGTIFF*
Ga0099693_13977062	3300006345	Marine	LFGSQNYISYNEVNLANYAHACFDKAMAEIVSKAI
Ga0099693_14680921	3300006345	Marine	LFISQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNL
Ga0099954_10932972	3300006350	Marine	LFSSQNYISYNEVNLANYAQACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDGTIFFLLELI*
Ga0099954_11075272	3300006350	Marine	LFSSQNYISYNEVNLANYAHACFDRAMAEIVSKVITTNLLLQLIMNELILLKETLLDGTIFFLFIM*
Ga0099954_11276192	3300006350	Marine	LFSSQNYISYNEVNLANYAQACFDKAIAEIVNKVITTNLLLQLIINELILLGETLLDGTIFF*
Ga0099954_11903892	3300006350	Marine	LVSSQNSISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKEILLDDTIFFLFIM*
Ga0099954_12228781	3300006350	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVNKAITTNLLLQVIMNELILLK
Ga0099954_13339522	3300006350	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIASKAITTNLLLQLIMNELILPKETLLDGTIFF*
Ga0099954_15559361	3300006350	Marine	LLSSQKYIYYNEVNLANYAHACFDKAIAEIVNKAITINLLLQLIMNELI
Ga0099953_10567142	3300006351	Marine	LFSSQNYISNNEVNLANYAHACFDKAIAEIVSKAIITNLLLQLIMNELILLEGTLLNEEMFF*
Ga0099953_12644202	3300006351	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDGTTFFLFII*
Ga0099953_12943643	3300006351	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAIT
Ga0099953_13364792	3300006351	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAMTTNLLLQLIMNEIILL
Ga0099953_13384642	3300006351	Marine	LVSSQNSISCNEVNLANYDHACFDKAMAEIVSKAITTTLLLQLIMSELTLLKETLLDVKIFF*
Ga0099953_13766972	3300006351	Marine	LFSSQNFISFNEVNLANYAHACFDKAIAEIVIKAMSTTLLLQLIINELILLEVTL*
Ga0099953_13839752	3300006351	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDGKTFFWFII*
Ga0099953_13885071	3300006351	Marine	LFSSQNYISYNKANLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKET
Ga0099953_14376782	3300006351	Marine	LLSSQNYISYNEVNLANYAHACFDKAIAEIVSKAITTNLLLQLIMNEQIL
Ga0099963_10637443	3300006413	Marine	LFSSQNCISYNEVNLANYAHACFDKAIAEIVSKAITTNLLLQLIMKELILLKEILLDDTI
Ga0099963_10801785	3300006413	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTTLLLQLIMNELIL
Ga0099963_10847213	3300006413	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLEETLLDGSIFF*
Ga0099963_10941642	3300006413	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVIKAITTNLLIQLIMNELILS*
Ga0099963_10942351	3300006413	Marine	LFSSQNCISYNEVNLANYAHACFDKAIAEIVSKAITTK
Ga0099963_11109002	3300006413	Marine	LFISQNYISNNEVNLANYAHACFDKAMAEIVSKEITTNLLLQLIL
Ga0099963_11277172	3300006413	Marine	LFSSQNYISYNEVNLANYAQACFDKAIAEIVSKAITTNLLLQLIMNEV
Ga0099963_11352732	3300006413	Marine	LFSSQNSISYNEVNLANYVHACFDKAMAEIVSKAITTSLLLQLIMNELILLKETLLDGSTSF*
Ga0099963_11699122	3300006413	Marine	LFSSQNYISYNEVNLANYAHACFDKAIAEIVNKAITTNLLLQLIMNELILLKEILLDGKIFF*
Ga0099963_11783623	3300006413	Marine	LFSSQNYISYNEDNLANYAQACFDKAMAEIVSKAITTN*
Ga0099963_11944122	3300006413	Marine	LFSSQNYISYNEVNLANYVQACFDKAIAEIVSKAITTNLLLQLIMNELI*
Ga0099963_12043932	3300006413	Marine	LFSSQNYISYNEVNLANYDHACFDKAMAEIVSKAITTSLLLQLIMNELILLKETLLDCTI
Ga0099963_12497744	3300006413	Marine	LFSSQNYISYYEINLANYAHACFDKAMAEIISKVITTNLLLQLIINELILLLENLLDGTIFY*
Ga0099963_13179562	3300006413	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILL
Ga0100224_10940911	3300006478	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKENLLDG
Ga0100226_12030562	3300006480	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAI
Ga0100226_12458483	3300006480	Marine	LVSFQNSISYNEDNLANYAHACFDKAMAEIVSKAIT
Ga0100226_12549833	3300006480	Marine	LFSSQNYISYNEVNLANYAHACFDKAIAEIVSKAITTNLLLQLIMNELILLKEILLDDTIFYLFIM*
Ga0100226_12827572	3300006480	Marine	LFSSQNYISFNEGNLANYAHACFDKAMAEIVSKAITTNLLLELIMIELILLKETLLDVTIFF*
Ga0100226_13013481	3300006480	Marine	LFSSQNFISFNEANLANYAHACFDKAIAEIVSKAIITNLLLQSIMNELILLKETLLDVTIFF*
Ga0100226_13395483	3300006480	Marine	LFSSQNCISYNEVNLANYAQACFDKAIAEIVSKAITTTLLLLLIMNELNLLRETLLDG*
Ga0100226_13460173	3300006480	Marine	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLHLIMNELILLKET
Ga0100226_14366182	3300006480	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLL
Ga0100229_13623071	3300006481	Marine	LFSSQNYISFNEVNLANYDQACFDKAMAEIVTKAITTNLLLQLIMNELILLKETLLDGTIFFLFIM*
Ga0100229_13997352	3300006481	Marine	LISSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMI
Ga0100229_14128343	3300006481	Marine	LFSSQNYISYNEVNLANYAHACYDKAMAEIVSKAITTNLLLQYIINELI*
Ga0100229_14209812	3300006481	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDGTVFF*
Ga0068494_1510545	3300006842	Marine	LFSSQNYISYNRVNLANYAHACFDKAMAEIISKAINTNLLLQLIMNEL
Ga0101669_1233671	3300007041	Volcanic Co2 Seep	LFGSQNCISYNEVNLANYDHACFDKEMAEIVSKAITTN
Ga0079257_13872941	3300007325	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLL
Ga0079240_10353261	3300007329	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLDG
Ga0102772_11426832	3300007601	Marine	LFSFQNYISYNEVNLANYDHACFDKAMAEIVSKAITTNLLLQLIMNELILLEGNMLDGEIVF*
Ga0102779_10109401	3300007605	Marine	LFSSQNYISYNEVNLANYAQACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLD
Ga0138370_11107412	3300011311	Marine	LFSSQNYISYNEDNLANYAQACFDKAIAEIVSKAITTNLLLQLIMNE
Ga0160422_103953282	3300012919	Seawater	LVSSQNSISYNEVNLANYAHACLDKAMAEIVSKAITTTLLLQLSMNELILLEEALLDGKFFFRFIM*
Ga0160422_108251881	3300012919	Seawater	LNAVNLANYAQACLDNAIAEIVSKAITTNLLLQLIMKILILLVGTLL
Ga0160423_112239512	3300012920	Surface Seawater	LTSSQNNFSCNEANLANYVHACFDKAIAEIASKAITTN
Ga0163110_112987751	3300012928	Surface Seawater	LFFSQNYISYNEVNLANYAQACFDKAIAEIANKAITTNLLLQLIINELILL
Ga0163110_113830941	3300012928	Surface Seawater	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTN
Ga0163109_106557902	3300012936	Surface Seawater	LSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQL
Ga0163109_108352531	3300012936	Surface Seawater	LFSSQNYINYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNEL
Ga0163109_109207682	3300012936	Surface Seawater	LFSSQNYISFNEVNLANYAHACFDKAMAEIVSKAI
Ga0163109_113010631	3300012936	Surface Seawater	LFSSQNYISYNEVNLANYAQACFDKAMAEIVSKAITTNLLLQLIMNELILLKETL
Ga0211674_100657591	3300020368	Marine	LNEVNLVNHAQACLDKAIAEIVSRAITTNLLLQLIMNELILLKETLLDGL
Ga0211498_100437753	3300020380	Marine	LISSQNSISYYEVNLANYAHACFDKAIAEIVIKAI
Ga0211499_101738531	3300020402	Marine	VFSSQNYISYSEVNLANYAQDCFVKAMAEIISKVITINLLLQLIMNELIWLEGTLLIGVILF
Ga0211539_101633441	3300020437	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELIL
Ga0211559_100069431	3300020442	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLK
Ga0211473_103693011	3300020451	Marine	LFSSQNYISYNEVNLANYAQACFDKAMAEIASNAITTNLLLQLIMNE
Ga0211551_103308792	3300020456	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNE
Ga0211714_101252423	3300020466	Marine	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIMNELILLREILLDGT
Ga0209433_102968091	3300027774	Marine	LFGSQNYISFNEVNLANYAHACFDKAMAEIVSKAITTNLLLHL
Ga0310343_107930122	3300031785	Seawater	LVSSQNSISYNEDNLANYAHACFDKAMAEIVIKAITTTLLLQLSMNELMLSKENLL
Ga0310343_108756392	3300031785	Seawater	LVSFQNSISYNEINLANYAHACFDKAIAEIISKAITTALLLQLIMNELILLEVTLLEGKIFF
Ga0310343_111860562	3300031785	Seawater	LFGSQNFISNNEVNLANYAHACFDKAMAEIVSKAITTSLLLQ
Ga0310343_113366612	3300031785	Seawater	VVNLANYAHACFDKAMAEIVSKAIITNLLLQLIMNELILLEGTLF
Ga0310345_117866851	3300032278	Seawater	LFSSQNYISYNEVNLANYAHACFDKAMAEIVSKAITTNLLLQLIM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign