3300007601: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_B metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007601
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125880 | Ga0102772
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_B metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73988818
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000254	Metagenome / Metatranscriptome	1450	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001504	Metagenome / Metatranscriptome	681	Y
F001682	Metagenome / Metatranscriptome	652	Y
F005911	Metagenome / Metatranscriptome	386	Y
F007173	Metagenome / Metatranscriptome	356	Y
F007527	Metagenome / Metatranscriptome	349	Y
F010164	Metagenome / Metatranscriptome	307	Y
F012124	Metagenome / Metatranscriptome	283	Y
F036277	Metagenome / Metatranscriptome	170	Y
F042354	Metagenome / Metatranscriptome	158	Y
F068862	Metatranscriptome	124	N
F070901	Metagenome / Metatranscriptome	122	Y
F071278	Metagenome / Metatranscriptome	122	N
F090442	Metagenome / Metatranscriptome	108	Y
F097482	Metagenome / Metatranscriptome	104	N
F101275	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102772_1007258	Not Available	541
Ga0102772_1007381	Not Available	646
Ga0102772_1031573	Not Available	561
Ga0102772_1101141	Not Available	630
Ga0102772_1127175	Not Available	756
Ga0102772_1141419	Not Available	512
Ga0102772_1143884	Not Available	530
Ga0102772_1145295	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	693
Ga0102772_1152892	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	533
Ga0102772_1153475	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	929
Ga0102772_1156167	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	652
Ga0102772_1162550	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	927
Ga0102772_1170252	Not Available	847
Ga0102772_1185641	Not Available	706
Ga0102772_1191106	Not Available	1315
Ga0102772_1191122	All Organisms → cellular organisms → Eukaryota → Sar	1574
Ga0102772_1198764	All Organisms → Viruses → Predicted Viral	1074
Ga0102772_1201254	Not Available	518
Ga0102772_1211393	Not Available	1057

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102772_1007258	Ga0102772_10072581	F090442	VATVVMIEPNVAIVFQDAYESGKSGIRRGIPANPKKCIGKKQTFTPTKVAQK*
Ga0102772_1007381	Ga0102772_10073811	F071278	NAYQMALSVKGKINGDSMQANKLDGTNVEDDIEDSLDPLFHNGSFITLREMVIASIIIVQNDPTTTSERGKKIPYDVDNSGVLIKFANSTDAVIAPSDTNRAIEDRANLAKVHDLHLFVNLAGTTDIDSRSNGPYAVGDPFYYVVMASDTDTGRTDGLTDDLKTVNLTQFPTGMLATNQGGPQAETSVILPQDFD*
Ga0102772_1031573	Ga0102772_10315731	F036277	LCSNPFVDKSTQYELRSPNKSKIDLIYLGSASLNN*
Ga0102772_1101141	Ga0102772_11011412	F007527	VTVAPEHNRSSVFNNGTSIGSKLSIPLGGHIDPNSITGARAAAKKAQKNAKKNIISDTINNNIPYRRPNWTIFV*
Ga0102772_1127175	Ga0102772_11271752	F005911	MLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSLSEDDLEAPIDDVFHNGKFISLKVMVKKAVIIAADDPTATARGGVDTPYDIDNSGVLIKYADAAGAVIAATDTGSGTDTIVADVHLFVNLAGTADAGSGSNAPYTAGEPFYYILMDADTANLTADDNTVNLTQFPTGILATNDGGPQAEVSVILPQDAEE
Ga0102772_1141419	Ga0102772_11414191	F005911	NAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDDVFHNGKFISLKVMVKKAIIIAADDPTATARAGSDMPYDLENSGVLIKYADADGNVIAATETGSGTDTIVADVQLFVNLAGTPDANSNSPYTDGDPFYYILMETANSGLAADDITVNLVQFPAGILATNDGGPQ
Ga0102772_1142683	Ga0102772_11426832	F097482	LFSFQNYISYNEVNLANYDHACFDKAMAEIVSKAITTNLLLQLIMNELILLEGNMLDGEIVF*
Ga0102772_1143884	Ga0102772_11438841	F001504	MTQDREHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSMRLYDPELTETKGFYNK*
Ga0102772_1143884	Ga0102772_11438842	F007173	MQATTTKAIISRDNLMEYIHEERDLLMGLQDDLSDMLSATGRYSITLDEIVQNYMPFIPLYLIENEDEIKQAYPDRVTDDEYIFIYDKDMTPNEITLNVEWRD*
Ga0102772_1145295	Ga0102772_11452951	F001682	PKAFAMVAAAVAALATLSNTAEITSNNIRDGAAFDNLKASWNQALKLGDFSSSLRCNYDRNANKDFLKDVQLSGDLVEAASADDVKVSYEVTHNFADKKTNVKLSANTQGTTLGAEIDDRQLQEVSAERDVEFSGNSVNVQPSWLVKAKTARVKLMSSLGKDNDRVSAQVDYDTNDRSTAVELGYERQLEEGRTVSATLTPADKNLDVELVDSKFEDGATWTAKASVPLE
Ga0102772_1152892	Ga0102772_11528921	F001145	KIHMDFSFLLNNEEAEALIQLNPNFFETNVINIGLLIGILIYANKTSFSVGLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKNLYEKDKVEIVETKYKLVKTGLTNTFSTTENLIKNFENKAFVALQRYMVLITASRILRKFLFLSEAEQSKLIDATISKLGGF
Ga0102772_1153475	Ga0102772_11534752	F012124	MLFLLATPEYNNIQSNTTKVRVHLRNGVAEIFDQHQDLMGKIDNNILEVETNFENKVEKLLFVLQDGVFIVSNQGLDVNSENKGTGIYVYAKKVKEITSSVSVEDVSKEYEEKKVSLEIENQKLGASEEADKAINSKIFVLKDEVEFLEKVVTV
Ga0102772_1156167	Ga0102772_11561671	F000254	SALPLRNLAAANRAGKMGKGKGQAPQFDLATALTKKETRVIRKAEYMIPYHMARCPNYGWKESPEYAQAEALKEKISAIEAKAKKRWEANFF*
Ga0102772_1162550	Ga0102772_11625501	F010164	QKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVLYEKDKIDLVTNKYNLVKNGLLETFLTTENLIANFEKKAFITLQRYIIFVTASRILRKFLFLSDEEQSKLIEVTISKLGGV*
Ga0102772_1170252	Ga0102772_11702521	F005911	MLKNKILNFLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQAEVSVILPQDTEE*
Ga0102772_1185641	Ga0102772_11856411	F005911	EGRNKYKTRTKGGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDIDNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATND
Ga0102772_1191106	Ga0102772_11911062	F101275	MLMSDVEPLKYEYRIGLETLVVRTVNQWALYDGSIFLLYQLTRKCLAWRVRLQRQNLKRLAGVCMNGGACGLIR
Ga0102772_1191122	Ga0102772_11911221	F001219	MIFPTTIFISKLFDFDLTFVIELGFFITLAIIVTFKFINPISKEIDDRAEFINYNLRKSTILLTFGYEKLSDCISLLTEEINELNRQTKLTRNYCNSNFENEISSIQKENLKILSELKGDLAIKSAFLFSNISGDLNSLTDKFFEKKFQSAP*
Ga0102772_1191122	Ga0102772_11911222	F001145	MNLNTLSFFLNEEPLIQLNPNILESNVQNIVILLGILIYANNVSFSVTLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKMLYEKDKADLVTNKYTMIKKGLEETFETTENLIKNVENKAFISIQRYMIFITASRILRKFLSLSEAEQSKIVEITISKLGGRK*
Ga0102772_1198764	Ga0102772_11987641	F070901	STTQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPQTSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIYPKADGLYLCGDKNVAKTWHFDLNDVIEQGFNIDGSHFGIKYIMTGRKVTLKVFDGPTRNTVNHGPLEMSGHETLDLETVKYGDDHWDSKAKSFTLVEV*
Ga0102772_1201254	Ga0102772_12012541	F042354	SQASVSAGLSYGSFNYDISGTKYTGDGGVLNLDGQLSPSITYSLSMSDGKFDDQVLSNSEGSITYNVYPNIGVHFMGSQIKLATVQETDTSLGFSYNINTPTLGINVFAGSDINNYGKFYTYGTKINLAVSRGSSLILSYKTEDRKQKATTMDARFVYDLTSNLGLNLGYKS
Ga0102772_1211393	Ga0102772_12113932	F068862	HTLGINFFFKAMLYKLFIALATLLVVNANAPSERSVHISTNTDVDGLNGLNLNWQVPFKVDDYTVGFRYKLNELKKYPETLFAKKVFDVADGEATVDADVNVDDKSLSANLKWVSDKLVDGMKTTFRLNGNSNDKLTSVGAEVSKNVDGHDVELKGHYDLTDSRLDANGKLVIDKTTAEVSYNSGDEDIKIQLSHDLDENNCPKGSYSTKTGHVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGNQGDWKTRAEVPLANNEIGNSKVTIKREWKY*