3300007041: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic

Overview

Basic Information

• IMG/M Taxon OID: 3300007041
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124793 | Ga0101669
• Sample Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51164258
• Sequencing Scaffolds: 39
• Novel Protein Genes: 42
• Associated Families: 40

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	2
All Organisms → cellular organisms → Bacteria	2
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1
All Organisms → Viruses	2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → volcano → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001756	Metagenome / Metatranscriptome	641	Y
F002192	Metagenome / Metatranscriptome	585	Y
F003869	Metagenome / Metatranscriptome	464	Y
F003928	Metagenome	461	Y
F004819	Metagenome / Metatranscriptome	422	Y
F004869	Metagenome / Metatranscriptome	420	Y
F005467	Metagenome / Metatranscriptome	400	Y
F013776	Metagenome / Metatranscriptome	268	Y
F018382	Metagenome	235	Y
F021056	Metagenome / Metatranscriptome	220	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101669_100895	All Organisms → Viruses → unclassified viruses → Virus sp.	2374
Ga0101669_103156	All Organisms → Viruses → Predicted Viral	1435
Ga0101669_103985	All Organisms → Viruses → Predicted Viral	1306
Ga0101669_104532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	1237
Ga0101669_104795	All Organisms → Viruses → Predicted Viral	1210
Ga0101669_104964	All Organisms → Viruses → Predicted Viral	1192
Ga0101669_106477	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063
Ga0101669_106928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1034
Ga0101669_106966	All Organisms → Viruses → Predicted Viral	1032
Ga0101669_107357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1009

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101669_100895	Ga0101669_1008951	F059061	VSNQGETGFFSTLRSGLRETGGFISDVFASGIPQLFGKQRPVGVGQQPAVTTVTNVGAQESQGSGSIQAGVGSVLPSLVSAGRGLLKSPLGQLALGTGSGLALSGLGGQPSGMRITRKMKSQARTILNMTGGNLSAASEILGIDEQTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRTTARRRSPMKRATTTTLIKN*
Ga0101669_100895	Ga0101669_1008954	F002192	MHQVLLYFSSITAIIALFFGLYACGRVARVLSATKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGAKQNGKIVGG*
Ga0101669_103156	Ga0101669_1031563	F046992	MIELLLASGLSCASSLELLNRVNEYSLRTDMPAAHIQEVIDVIKEDNPECFNEGSVHD*
Ga0101669_103985	Ga0101669_1039852	F021559	MTDHAPLDKPIVEILQAYNPLEIKDILLHGSWRKAVHHKDWADVLAYYQENCEYMHHYLLDSPDAWNHYGMMQKAYSMTDHTPQDQKDYIKDVFYLYLDVLASDIGHKWDLHKTPRKQIEDDVLAIELKIRKDQLGVIDGGKE*
Ga0101669_104532	Ga0101669_1045323	F084330	MASRLVSVSKNIFGKAFYSNLWIAISFGLVSQVIGYTKYEGYFDIYWIVMKDGYLYFNLYPSLDELSAVLFIRVFLAVFVFLTVKDKLNCN*
Ga0101669_104795	Ga0101669_1047952	F028529	MRLSKYLTENLENKTVNLTLTFDERSELLKHLEMYDEHFDQLHPLVESVQDKLLGID*
Ga0101669_104795	Ga0101669_1047954	F004869	MSYDREHYYAVQSFLEDDELCKIWNIIEIAMNREGYDVSNAELSMRLYDDELTENVEHDYLDSLSEGYDTKVDALVDSMGVSDKLVSQRHERRDLDAL*
Ga0101669_104964	Ga0101669_1049643	F090233	LGKSRVIKNLEIDIHFRHHADNGEAMIHENEFRSRPRMFRVVIDPYKTRIDDYGREMSDEEHANEMFKVLGHELVHVKQYIVGDLSMRSKGMYWKGELTKIDNMMEYFKSPWEIEAYGLERYLWMNFIDFWKSNVEKHLEEKE*
Ga0101669_106477	Ga0101669_1064772	F030783	LLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSQDLANSKTNITFIDFDIEDSKLVSLTDESLSKNYHQRAPPKI*
Ga0101669_106928	Ga0101669_1069282	F001756	NRPRKKLCPKLEKNVKINPNTITFKLKLLNIEKNYDL*
Ga0101669_106966	Ga0101669_1069662	F003928	MNTFTTTAYNTLGEAVEHETINDSWKATETCLDFSMLYGYAETTDLWGRHYGEYGDRPVALGQRVY*
Ga0101669_107357	Ga0101669_1073571	F001756	NRPRKKLCPKLEKNVKINPNTITFKLKLLNIENNYDL*
Ga0101669_107981	Ga0101669_1079813	F100978	MSKVRYVEAMYNTAVTWDIEDIAKRHKFKIEEIDNMEVGKWVKLFITLKDGTQFWEDGNESDDTDWKWAEHQRFYDKR*
Ga0101669_108848	Ga0101669_1088483	F024331	MIDQKLKPLYMLIKVDVDAGIVYNQEKADTYAENHCQSLEYELVDTYYPDEEEYVYIAK*
Ga0101669_113149	Ga0101669_1131492	F105856	MSSYVQGLLTGGVLVFSALIFMGQQDLELAEQRANNRFDEIVKALEIVYEQIDSTSENNFVKMNELEKKIDHMETLVVE
Ga0101669_113360	Ga0101669_1133601	F068787	ILKNMIGKMSQKHQKNLSIKGKITPFFFAMLFVILCATSIFLIHPVLYFLKYFAAFGLIIGLLLIVYILKTDEL*
Ga0101669_113462	Ga0101669_1134621	F081298	MLLNKKSLFIPLVLIICSCNTSYQPLQSKNIFIANDVDVRFAELVHKRFFHEIKTEQKIDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKENVYVNEFNPIAQNNA
Ga0101669_114239	Ga0101669_1142391	F061783	GNVTEKQVPWWTLHEVADELNATLRHITCVDSNGRRYKRVVLEYEEEEE*
Ga0101669_115792	Ga0101669_1157923	F054095	MIPQWKMNGKDMRFDGSIEIGVVEVRDLFDDLVVTLWVDQEESGSIAVKTLGGIGNGRYSVQILPREKPVEEGEEWKER*
Ga0101669_116402	Ga0101669_1164022	F037932	MSTLKANIIESHSNSTEFKETITANGDSQWLDTYGVIKANRDTIAESITIPSGTSFLISSSTS*
Ga0101669_117364	Ga0101669_1173642	F004819	MEFYPKDKNPMLDERSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMTFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDNTYHVTLHVQECNPTDLTIYDNSNRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101669_119805	Ga0101669_1198052	F103871	MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVVLTRR*
Ga0101669_120081	Ga0101669_1200813	F034213	MGAKQKIQNLKNFATLDKPFKEWLTTCPIEYIWQIDEVTKNHEGTFTFRRTNGIL*
Ga0101669_120293	Ga0101669_1202932	F090988	MTGVAAQLIAGKDISKLNASYITEQLETSVSPIGSSNSIGQSLLRYQQLLIQQARSNLRSKYPEPVQLNSILYPT*
Ga0101669_121929	Ga0101669_1219292	F013776	MKEFSFTVQKTGWIHVEADSLEDAEARLQENFGHYYVVTETGEELSNGWETTGEVEEDPVL*
Ga0101669_121972	Ga0101669_1219721	F033464	MGIFLPLLLANHEPVHWTIRCDGWKELASEVRQDEYLDEQSKSDLINYFKTKVEVECDFEP*
Ga0101669_123254	Ga0101669_1232542	F037415	ENKIQPALLDFIKTKYGANPNVDWYGAGGGSIYNINTFLDNYHKIYDFLDFEFDYILKYMDHRFGWLDLYMQIAYFVCGKDYSINTNFTETWKTPHFRETDFSLVHAYKELY*
Ga0101669_123367	Ga0101669_1233671	F097482	LFGSQNCISYNEVNLANYDHACFDKEMAEIVSKAITTN
Ga0101669_123852	Ga0101669_1238523	F021056	KDLLEKWQILGLSFMMMSKTPEDFHDLVKQEFGYIWDGKGWIKEVEYQ*
Ga0101669_124785	Ga0101669_1247851	F103090	SIRRLCGMSEQPKRTETVEEYLQRGGTITRLPDSPNRFYGVEMDSPTTVKPTSEMTETVEYKRVSWKDVEHDEKIIETDDQYWKAVDAAVDKLMSKYS*
Ga0101669_127347	Ga0101669_1273472	F076169	SGVIAKKPTKNLTALNVKGPILSMPVSWAINVVPQMKVHNKALNNDMDLLIFN*
Ga0101669_127356	Ga0101669_1273561	F067840	MVKKLGRRYRQTKKAIYTAYDILSLIVILLSFDKLLSSKTRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK*
Ga0101669_128488	Ga0101669_1284882	F097360	MNLFQESKNILDKDGKVNPLGPYGRQKLTGREMSTYFRRNKVKDAKLRKAVEVAL
Ga0101669_128836	Ga0101669_1288361	F059469	TIIGEGVKLDSQVHVGNNVAGFVNAVMKKDEATAKLEHTKLAYVNYQNMSATGDDKFVGVIFMSLKGKWSNVVRNIDELVQNLAVRTIYVMSPDQNDLFPQTTFKF*
Ga0101669_129037	Ga0101669_1290371	F018382	GNHQIKIEDEKIKSKPINKNDGKESKAGFAMTKPKPKKIGTNDAMKVSFKFMSLI*
Ga0101669_129711	Ga0101669_1297111	F097518	MTMYEIRVTQTCRDYYRLEADNPKDAEQQLWAALRSGIRGNIELNDTIDSAPTIDY
Ga0101669_130530	Ga0101669_1305301	F042010	VVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAIFGSSSGLVA*
Ga0101669_130639	Ga0101669_1306392	F003869	MAKRQYNRTHFYSICSMMTDEKVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVN*
Ga0101669_131036	Ga0101669_1310362	F097518	MTNYEIRVTQVTRDYYRLEAKSPEEAEKLLWTALSTGIMGNIELNDTNDNPPKIDYTVQVSPEGEVII*
Ga0101669_131101	Ga0101669_1311012	F039683	MNYDEILKCYEGHTDLHANTSFEFGLMNVTYYMLFRDHDLLEYATLQTGTN*
Ga0101669_132039	Ga0101669_1320391	F098024	KNVEMMFDIIITSLKLGAGCILLYIMYQFSQGMEAWVELDRMMR*
Ga0101669_132230	Ga0101669_1322301	F005467	MQYYYVMCQKGALIHRAYVQLDSESADILHDALEENYDICQVCDVKASEVDPDILI*