| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300007041 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117787 | Gp0124793 | Ga0101669 |
| Sample Name | Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic |
| Sequencing Status | Finished |
| Sequencing Center | University of New South Wales |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 51164258 |
| Sequencing Scaffolds | 39 |
| Novel Protein Genes | 42 |
| Associated Families | 40 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → unclassified viruses → Virus sp. | 1 |
| All Organisms → Viruses → Predicted Viral | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 2 |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales | 1 |
| All Organisms → Viruses | 2 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → volcano → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Upa-Upasina 'control' site, Papua New Guinea | |||||||
| Coordinates | Lat. (o) | -9.828217 | Long. (o) | 150.820517 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001756 | Metagenome / Metatranscriptome | 641 | Y |
| F002192 | Metagenome / Metatranscriptome | 585 | Y |
| F003869 | Metagenome / Metatranscriptome | 464 | Y |
| F003928 | Metagenome | 461 | Y |
| F004819 | Metagenome / Metatranscriptome | 422 | Y |
| F004869 | Metagenome / Metatranscriptome | 420 | Y |
| F005467 | Metagenome / Metatranscriptome | 400 | Y |
| F013776 | Metagenome / Metatranscriptome | 268 | Y |
| F018382 | Metagenome | 235 | Y |
| F021056 | Metagenome / Metatranscriptome | 220 | Y |
| F021559 | Metagenome / Metatranscriptome | 218 | Y |
| F024331 | Metagenome / Metatranscriptome | 206 | Y |
| F028529 | Metagenome / Metatranscriptome | 191 | N |
| F030783 | Metagenome / Metatranscriptome | 184 | N |
| F033464 | Metagenome / Metatranscriptome | 177 | Y |
| F034213 | Metagenome / Metatranscriptome | 175 | Y |
| F037415 | Metagenome / Metatranscriptome | 168 | N |
| F037932 | Metagenome / Metatranscriptome | 167 | Y |
| F039683 | Metagenome / Metatranscriptome | 163 | N |
| F042010 | Metagenome / Metatranscriptome | 159 | N |
| F046992 | Metagenome | 150 | Y |
| F054095 | Metagenome | 140 | N |
| F059061 | Metagenome / Metatranscriptome | 134 | Y |
| F059469 | Metagenome / Metatranscriptome | 134 | Y |
| F061783 | Metagenome | 131 | N |
| F067840 | Metagenome | 125 | N |
| F068787 | Metagenome / Metatranscriptome | 124 | N |
| F076169 | Metagenome / Metatranscriptome | 118 | Y |
| F081298 | Metagenome / Metatranscriptome | 114 | N |
| F084330 | Metagenome / Metatranscriptome | 112 | Y |
| F090233 | Metagenome | 108 | N |
| F090988 | Metagenome / Metatranscriptome | 108 | Y |
| F097360 | Metagenome / Metatranscriptome | 104 | Y |
| F097482 | Metagenome / Metatranscriptome | 104 | N |
| F097518 | Metagenome | 104 | Y |
| F098024 | Metagenome | 104 | Y |
| F100978 | Metagenome | 102 | N |
| F103090 | Metagenome | 101 | Y |
| F103871 | Metagenome / Metatranscriptome | 101 | Y |
| F105856 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0101669_100895 | All Organisms → Viruses → unclassified viruses → Virus sp. | 2374 | Open in IMG/M |
| Ga0101669_103156 | All Organisms → Viruses → Predicted Viral | 1435 | Open in IMG/M |
| Ga0101669_103985 | All Organisms → Viruses → Predicted Viral | 1306 | Open in IMG/M |
| Ga0101669_104532 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271 | 1237 | Open in IMG/M |
| Ga0101669_104795 | All Organisms → Viruses → Predicted Viral | 1210 | Open in IMG/M |
| Ga0101669_104964 | All Organisms → Viruses → Predicted Viral | 1192 | Open in IMG/M |
| Ga0101669_106477 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1063 | Open in IMG/M |
| Ga0101669_106928 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 1034 | Open in IMG/M |
| Ga0101669_106966 | All Organisms → Viruses → Predicted Viral | 1032 | Open in IMG/M |
| Ga0101669_107357 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 1009 | Open in IMG/M |
| Ga0101669_107981 | All Organisms → cellular organisms → Bacteria | 975 | Open in IMG/M |
| Ga0101669_108848 | Not Available | 932 | Open in IMG/M |
| Ga0101669_113149 | Not Available | 780 | Open in IMG/M |
| Ga0101669_113360 | Not Available | 774 | Open in IMG/M |
| Ga0101669_113462 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 771 | Open in IMG/M |
| Ga0101669_114239 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 752 | Open in IMG/M |
| Ga0101669_115792 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium | 718 | Open in IMG/M |
| Ga0101669_116402 | Not Available | 706 | Open in IMG/M |
| Ga0101669_117364 | Not Available | 687 | Open in IMG/M |
| Ga0101669_119805 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 645 | Open in IMG/M |
| Ga0101669_120081 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 641 | Open in IMG/M |
| Ga0101669_120293 | All Organisms → cellular organisms → Bacteria | 638 | Open in IMG/M |
| Ga0101669_121929 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 614 | Open in IMG/M |
| Ga0101669_121972 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 613 | Open in IMG/M |
| Ga0101669_123254 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | 596 | Open in IMG/M |
| Ga0101669_123852 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 588 | Open in IMG/M |
| Ga0101669_124785 | Not Available | 576 | Open in IMG/M |
| Ga0101669_127347 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique | 548 | Open in IMG/M |
| Ga0101669_127356 | Not Available | 548 | Open in IMG/M |
| Ga0101669_128488 | Not Available | 537 | Open in IMG/M |
| Ga0101669_128836 | Not Available | 533 | Open in IMG/M |
| Ga0101669_129037 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales | 532 | Open in IMG/M |
| Ga0101669_129711 | All Organisms → Viruses | 525 | Open in IMG/M |
| Ga0101669_130530 | Not Available | 518 | Open in IMG/M |
| Ga0101669_130639 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 517 | Open in IMG/M |
| Ga0101669_131036 | All Organisms → Viruses | 514 | Open in IMG/M |
| Ga0101669_131101 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. | 513 | Open in IMG/M |
| Ga0101669_132039 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 505 | Open in IMG/M |
| Ga0101669_132230 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0101669_100895 | Ga0101669_1008951 | F059061 | VSNQGETGFFSTLRSGLRETGGFISDVFASGIPQLFGKQRPVGVGQQPAVTTVTNVGAQESQGSGSIQAGVGSVLPSLVSAGRGLLKSPLGQLALGTGSGLALSGLGGQPSGMRITRKMKSQARTILNMTGGNLSAASEILGIDEQTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRTTARRRSPMKRATTTTLIKN* |
| Ga0101669_100895 | Ga0101669_1008954 | F002192 | MHQVLLYFSSITAIIALFFGLYACGRVARVLSATKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGAKQNGKIVGG* |
| Ga0101669_103156 | Ga0101669_1031563 | F046992 | MIELLLASGLSCASSLELLNRVNEYSLRTDMPAAHIQEVIDVIKEDNPECFNEGSVHD* |
| Ga0101669_103985 | Ga0101669_1039852 | F021559 | MTDHAPLDKPIVEILQAYNPLEIKDILLHGSWRKAVHHKDWADVLAYYQENCEYMHHYLLDSPDAWNHYGMMQKAYSMTDHTPQDQKDYIKDVFYLYLDVLASDIGHKWDLHKTPRKQIEDDVLAIELKIRKDQLGVIDGGKE* |
| Ga0101669_104532 | Ga0101669_1045323 | F084330 | MASRLVSVSKNIFGKAFYSNLWIAISFGLVSQVIGYTKYEGYFDIYWIVMKDGYLYFNLYPSLDELSAVLFIRVFLAVFVFLTVKDKLNCN* |
| Ga0101669_104795 | Ga0101669_1047952 | F028529 | MRLSKYLTENLENKTVNLTLTFDERSELLKHLEMYDEHFDQLHPLVESVQDKLLGID* |
| Ga0101669_104795 | Ga0101669_1047954 | F004869 | MSYDREHYYAVQSFLEDDELCKIWNIIEIAMNREGYDVSNAELSMRLYDDELTENVEHDYLDSLSEGYDTKVDALVDSMGVSDKLVSQRHERRDLDAL* |
| Ga0101669_104964 | Ga0101669_1049643 | F090233 | LGKSRVIKNLEIDIHFRHHADNGEAMIHENEFRSRPRMFRVVIDPYKTRIDDYGREMSDEEHANEMFKVLGHELVHVKQYIVGDLSMRSKGMYWKGELTKIDNMMEYFKSPWEIEAYGLERYLWMNFIDFWKSNVEKHLEEKE* |
| Ga0101669_106477 | Ga0101669_1064772 | F030783 | LLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSQDLANSKTNITFIDFDIEDSKLVSLTDESLSKNYHQRAPPKI* |
| Ga0101669_106928 | Ga0101669_1069282 | F001756 | NRPRKKLCPKLEKNVKINPNTITFKLKLLNIEKNYDL* |
| Ga0101669_106966 | Ga0101669_1069662 | F003928 | MNTFTTTAYNTLGEAVEHETINDSWKATETCLDFSMLYGYAETTDLWGRHYGEYGDRPVALGQRVY* |
| Ga0101669_107357 | Ga0101669_1073571 | F001756 | NRPRKKLCPKLEKNVKINPNTITFKLKLLNIENNYDL* |
| Ga0101669_107981 | Ga0101669_1079813 | F100978 | MSKVRYVEAMYNTAVTWDIEDIAKRHKFKIEEIDNMEVGKWVKLFITLKDGTQFWEDGNESDDTDWKWAEHQRFYDKR* |
| Ga0101669_108848 | Ga0101669_1088483 | F024331 | MIDQKLKPLYMLIKVDVDAGIVYNQEKADTYAENHCQSLEYELVDTYYPDEEEYVYIAK* |
| Ga0101669_113149 | Ga0101669_1131492 | F105856 | MSSYVQGLLTGGVLVFSALIFMGQQDLELAEQRANNRFDEIVKALEIVYEQIDSTSENNFVKMNELEKKIDHMETLVVE |
| Ga0101669_113360 | Ga0101669_1133601 | F068787 | ILKNMIGKMSQKHQKNLSIKGKITPFFFAMLFVILCATSIFLIHPVLYFLKYFAAFGLIIGLLLIVYILKTDEL* |
| Ga0101669_113462 | Ga0101669_1134621 | F081298 | MLLNKKSLFIPLVLIICSCNTSYQPLQSKNIFIANDVDVRFAELVHKRFFHEIKTEQKIDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKENVYVNEFNPIAQNNA |
| Ga0101669_114239 | Ga0101669_1142391 | F061783 | GNVTEKQVPWWTLHEVADELNATLRHITCVDSNGRRYKRVVLEYEEEEE* |
| Ga0101669_115792 | Ga0101669_1157923 | F054095 | MIPQWKMNGKDMRFDGSIEIGVVEVRDLFDDLVVTLWVDQEESGSIAVKTLGGIGNGRYSVQILPREKPVEEGEEWKER* |
| Ga0101669_116402 | Ga0101669_1164022 | F037932 | MSTLKANIIESHSNSTEFKETITANGDSQWLDTYGVIKANRDTIAESITIPSGTSFLISSSTS* |
| Ga0101669_117364 | Ga0101669_1173642 | F004819 | MEFYPKDKNPMLDERSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMTFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDNTYHVTLHVQECNPTDLTIYDNSNRGDFFDLSGNNLESPMADLERIVNGG* |
| Ga0101669_119805 | Ga0101669_1198052 | F103871 | MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVVLTRR* |
| Ga0101669_120081 | Ga0101669_1200813 | F034213 | MGAKQKIQNLKNFATLDKPFKEWLTTCPIEYIWQIDEVTKNHEGTFTFRRTNGIL* |
| Ga0101669_120293 | Ga0101669_1202932 | F090988 | MTGVAAQLIAGKDISKLNASYITEQLETSVSPIGSSNSIGQSLLRYQQLLIQQARSNLRSKYPEPVQLNSILYPT* |
| Ga0101669_121929 | Ga0101669_1219292 | F013776 | MKEFSFTVQKTGWIHVEADSLEDAEARLQENFGHYYVVTETGEELSNGWETTGEVEEDPVL* |
| Ga0101669_121972 | Ga0101669_1219721 | F033464 | MGIFLPLLLANHEPVHWTIRCDGWKELASEVRQDEYLDEQSKSDLINYFKTKVEVECDFEP* |
| Ga0101669_123254 | Ga0101669_1232542 | F037415 | ENKIQPALLDFIKTKYGANPNVDWYGAGGGSIYNINTFLDNYHKIYDFLDFEFDYILKYMDHRFGWLDLYMQIAYFVCGKDYSINTNFTETWKTPHFRETDFSLVHAYKELY* |
| Ga0101669_123367 | Ga0101669_1233671 | F097482 | LFGSQNCISYNEVNLANYDHACFDKEMAEIVSKAITTN |
| Ga0101669_123852 | Ga0101669_1238523 | F021056 | KDLLEKWQILGLSFMMMSKTPEDFHDLVKQEFGYIWDGKGWIKEVEYQ* |
| Ga0101669_124785 | Ga0101669_1247851 | F103090 | SIRRLCGMSEQPKRTETVEEYLQRGGTITRLPDSPNRFYGVEMDSPTTVKPTSEMTETVEYKRVSWKDVEHDEKIIETDDQYWKAVDAAVDKLMSKYS* |
| Ga0101669_127347 | Ga0101669_1273472 | F076169 | SGVIAKKPTKNLTALNVKGPILSMPVSWAINVVPQMKVHNKALNNDMDLLIFN* |
| Ga0101669_127356 | Ga0101669_1273561 | F067840 | MVKKLGRRYRQTKKAIYTAYDILSLIVILLSFDKLLSSKTRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK* |
| Ga0101669_128488 | Ga0101669_1284882 | F097360 | MNLFQESKNILDKDGKVNPLGPYGRQKLTGREMSTYFRRNKVKDAKLRKAVEVAL |
| Ga0101669_128836 | Ga0101669_1288361 | F059469 | TIIGEGVKLDSQVHVGNNVAGFVNAVMKKDEATAKLEHTKLAYVNYQNMSATGDDKFVGVIFMSLKGKWSNVVRNIDELVQNLAVRTIYVMSPDQNDLFPQTTFKF* |
| Ga0101669_129037 | Ga0101669_1290371 | F018382 | GNHQIKIEDEKIKSKPINKNDGKESKAGFAMTKPKPKKIGTNDAMKVSFKFMSLI* |
| Ga0101669_129711 | Ga0101669_1297111 | F097518 | MTMYEIRVTQTCRDYYRLEADNPKDAEQQLWAALRSGIRGNIELNDTIDSAPTIDY |
| Ga0101669_130530 | Ga0101669_1305301 | F042010 | VVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAIFGSSSGLVA* |
| Ga0101669_130639 | Ga0101669_1306392 | F003869 | MAKRQYNRTHFYSICSMMTDEKVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVN* |
| Ga0101669_131036 | Ga0101669_1310362 | F097518 | MTNYEIRVTQVTRDYYRLEAKSPEEAEKLLWTALSTGIMGNIELNDTNDNPPKIDYTVQVSPEGEVII* |
| Ga0101669_131101 | Ga0101669_1311012 | F039683 | MNYDEILKCYEGHTDLHANTSFEFGLMNVTYYMLFRDHDLLEYATLQTGTN* |
| Ga0101669_132039 | Ga0101669_1320391 | F098024 | KNVEMMFDIIITSLKLGAGCILLYIMYQFSQGMEAWVELDRMMR* |
| Ga0101669_132230 | Ga0101669_1322301 | F005467 | MQYYYVMCQKGALIHRAYVQLDSESADILHDALEENYDICQVCDVKASEVDPDILI* |
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