NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007041

3300007041: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic



Overview

Basic Information
IMG/M Taxon OID3300007041 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117787 | Gp0124793 | Ga0101669
Sample NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size51164258
Sequencing Scaffolds39
Novel Protein Genes42
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → Virus sp.1
All Organisms → Viruses → Predicted Viral5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED2711
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC90632
All Organisms → cellular organisms → Bacteria2
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales1
All Organisms → Viruses2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomevolcanosea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001756Metagenome / Metatranscriptome641Y
F002192Metagenome / Metatranscriptome585Y
F003869Metagenome / Metatranscriptome464Y
F003928Metagenome461Y
F004819Metagenome / Metatranscriptome422Y
F004869Metagenome / Metatranscriptome420Y
F005467Metagenome / Metatranscriptome400Y
F013776Metagenome / Metatranscriptome268Y
F018382Metagenome235Y
F021056Metagenome / Metatranscriptome220Y
F021559Metagenome / Metatranscriptome218Y
F024331Metagenome / Metatranscriptome206Y
F028529Metagenome / Metatranscriptome191N
F030783Metagenome / Metatranscriptome184N
F033464Metagenome / Metatranscriptome177Y
F034213Metagenome / Metatranscriptome175Y
F037415Metagenome / Metatranscriptome168N
F037932Metagenome / Metatranscriptome167Y
F039683Metagenome / Metatranscriptome163N
F042010Metagenome / Metatranscriptome159N
F046992Metagenome150Y
F054095Metagenome140N
F059061Metagenome / Metatranscriptome134Y
F059469Metagenome / Metatranscriptome134Y
F061783Metagenome131N
F067840Metagenome125N
F068787Metagenome / Metatranscriptome124N
F076169Metagenome / Metatranscriptome118Y
F081298Metagenome / Metatranscriptome114N
F084330Metagenome / Metatranscriptome112Y
F090233Metagenome108N
F090988Metagenome / Metatranscriptome108Y
F097360Metagenome / Metatranscriptome104Y
F097482Metagenome / Metatranscriptome104N
F097518Metagenome104Y
F098024Metagenome104Y
F100978Metagenome102N
F103090Metagenome101Y
F103871Metagenome / Metatranscriptome101Y
F105856Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101669_100895All Organisms → Viruses → unclassified viruses → Virus sp.2374Open in IMG/M
Ga0101669_103156All Organisms → Viruses → Predicted Viral1435Open in IMG/M
Ga0101669_103985All Organisms → Viruses → Predicted Viral1306Open in IMG/M
Ga0101669_104532All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED2711237Open in IMG/M
Ga0101669_104795All Organisms → Viruses → Predicted Viral1210Open in IMG/M
Ga0101669_104964All Organisms → Viruses → Predicted Viral1192Open in IMG/M
Ga0101669_106477All Organisms → cellular organisms → Bacteria → Proteobacteria1063Open in IMG/M
Ga0101669_106928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC90631034Open in IMG/M
Ga0101669_106966All Organisms → Viruses → Predicted Viral1032Open in IMG/M
Ga0101669_107357All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC90631009Open in IMG/M
Ga0101669_107981All Organisms → cellular organisms → Bacteria975Open in IMG/M
Ga0101669_108848Not Available932Open in IMG/M
Ga0101669_113149Not Available780Open in IMG/M
Ga0101669_113360Not Available774Open in IMG/M
Ga0101669_113462All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria771Open in IMG/M
Ga0101669_114239All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae752Open in IMG/M
Ga0101669_115792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium718Open in IMG/M
Ga0101669_116402Not Available706Open in IMG/M
Ga0101669_117364Not Available687Open in IMG/M
Ga0101669_119805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria645Open in IMG/M
Ga0101669_120081All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.641Open in IMG/M
Ga0101669_120293All Organisms → cellular organisms → Bacteria638Open in IMG/M
Ga0101669_121929All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.614Open in IMG/M
Ga0101669_121972All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae613Open in IMG/M
Ga0101669_123254All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium596Open in IMG/M
Ga0101669_123852All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria588Open in IMG/M
Ga0101669_124785Not Available576Open in IMG/M
Ga0101669_127347All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique548Open in IMG/M
Ga0101669_127356Not Available548Open in IMG/M
Ga0101669_128488Not Available537Open in IMG/M
Ga0101669_128836Not Available533Open in IMG/M
Ga0101669_129037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales532Open in IMG/M
Ga0101669_129711All Organisms → Viruses525Open in IMG/M
Ga0101669_130530Not Available518Open in IMG/M
Ga0101669_130639All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae517Open in IMG/M
Ga0101669_131036All Organisms → Viruses514Open in IMG/M
Ga0101669_131101All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.513Open in IMG/M
Ga0101669_132039All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon505Open in IMG/M
Ga0101669_132230Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101669_100895Ga0101669_1008951F059061VSNQGETGFFSTLRSGLRETGGFISDVFASGIPQLFGKQRPVGVGQQPAVTTVTNVGAQESQGSGSIQAGVGSVLPSLVSAGRGLLKSPLGQLALGTGSGLALSGLGGQPSGMRITRKMKSQARTILNMTGGNLSAASEILGIDEQTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRTTARRRSPMKRATTTTLIKN*
Ga0101669_100895Ga0101669_1008954F002192MHQVLLYFSSITAIIALFFGLYACGRVARVLSATKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGAKQNGKIVGG*
Ga0101669_103156Ga0101669_1031563F046992MIELLLASGLSCASSLELLNRVNEYSLRTDMPAAHIQEVIDVIKEDNPECFNEGSVHD*
Ga0101669_103985Ga0101669_1039852F021559MTDHAPLDKPIVEILQAYNPLEIKDILLHGSWRKAVHHKDWADVLAYYQENCEYMHHYLLDSPDAWNHYGMMQKAYSMTDHTPQDQKDYIKDVFYLYLDVLASDIGHKWDLHKTPRKQIEDDVLAIELKIRKDQLGVIDGGKE*
Ga0101669_104532Ga0101669_1045323F084330MASRLVSVSKNIFGKAFYSNLWIAISFGLVSQVIGYTKYEGYFDIYWIVMKDGYLYFNLYPSLDELSAVLFIRVFLAVFVFLTVKDKLNCN*
Ga0101669_104795Ga0101669_1047952F028529MRLSKYLTENLENKTVNLTLTFDERSELLKHLEMYDEHFDQLHPLVESVQDKLLGID*
Ga0101669_104795Ga0101669_1047954F004869MSYDREHYYAVQSFLEDDELCKIWNIIEIAMNREGYDVSNAELSMRLYDDELTENVEHDYLDSLSEGYDTKVDALVDSMGVSDKLVSQRHERRDLDAL*
Ga0101669_104964Ga0101669_1049643F090233LGKSRVIKNLEIDIHFRHHADNGEAMIHENEFRSRPRMFRVVIDPYKTRIDDYGREMSDEEHANEMFKVLGHELVHVKQYIVGDLSMRSKGMYWKGELTKIDNMMEYFKSPWEIEAYGLERYLWMNFIDFWKSNVEKHLEEKE*
Ga0101669_106477Ga0101669_1064772F030783LLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSQDLANSKTNITFIDFDIEDSKLVSLTDESLSKNYHQRAPPKI*
Ga0101669_106928Ga0101669_1069282F001756NRPRKKLCPKLEKNVKINPNTITFKLKLLNIEKNYDL*
Ga0101669_106966Ga0101669_1069662F003928MNTFTTTAYNTLGEAVEHETINDSWKATETCLDFSMLYGYAETTDLWGRHYGEYGDRPVALGQRVY*
Ga0101669_107357Ga0101669_1073571F001756NRPRKKLCPKLEKNVKINPNTITFKLKLLNIENNYDL*
Ga0101669_107981Ga0101669_1079813F100978MSKVRYVEAMYNTAVTWDIEDIAKRHKFKIEEIDNMEVGKWVKLFITLKDGTQFWEDGNESDDTDWKWAEHQRFYDKR*
Ga0101669_108848Ga0101669_1088483F024331MIDQKLKPLYMLIKVDVDAGIVYNQEKADTYAENHCQSLEYELVDTYYPDEEEYVYIAK*
Ga0101669_113149Ga0101669_1131492F105856MSSYVQGLLTGGVLVFSALIFMGQQDLELAEQRANNRFDEIVKALEIVYEQIDSTSENNFVKMNELEKKIDHMETLVVE
Ga0101669_113360Ga0101669_1133601F068787ILKNMIGKMSQKHQKNLSIKGKITPFFFAMLFVILCATSIFLIHPVLYFLKYFAAFGLIIGLLLIVYILKTDEL*
Ga0101669_113462Ga0101669_1134621F081298MLLNKKSLFIPLVLIICSCNTSYQPLQSKNIFIANDVDVRFAELVHKRFFHEIKTEQKIDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKENVYVNEFNPIAQNNA
Ga0101669_114239Ga0101669_1142391F061783GNVTEKQVPWWTLHEVADELNATLRHITCVDSNGRRYKRVVLEYEEEEE*
Ga0101669_115792Ga0101669_1157923F054095MIPQWKMNGKDMRFDGSIEIGVVEVRDLFDDLVVTLWVDQEESGSIAVKTLGGIGNGRYSVQILPREKPVEEGEEWKER*
Ga0101669_116402Ga0101669_1164022F037932MSTLKANIIESHSNSTEFKETITANGDSQWLDTYGVIKANRDTIAESITIPSGTSFLISSSTS*
Ga0101669_117364Ga0101669_1173642F004819MEFYPKDKNPMLDERSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMTFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDNTYHVTLHVQECNPTDLTIYDNSNRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101669_119805Ga0101669_1198052F103871MVQIPGLILDCSKKKPPAKAVVYQTYDALAGFIKRPQVVLTRR*
Ga0101669_120081Ga0101669_1200813F034213MGAKQKIQNLKNFATLDKPFKEWLTTCPIEYIWQIDEVTKNHEGTFTFRRTNGIL*
Ga0101669_120293Ga0101669_1202932F090988MTGVAAQLIAGKDISKLNASYITEQLETSVSPIGSSNSIGQSLLRYQQLLIQQARSNLRSKYPEPVQLNSILYPT*
Ga0101669_121929Ga0101669_1219292F013776MKEFSFTVQKTGWIHVEADSLEDAEARLQENFGHYYVVTETGEELSNGWETTGEVEEDPVL*
Ga0101669_121972Ga0101669_1219721F033464MGIFLPLLLANHEPVHWTIRCDGWKELASEVRQDEYLDEQSKSDLINYFKTKVEVECDFEP*
Ga0101669_123254Ga0101669_1232542F037415ENKIQPALLDFIKTKYGANPNVDWYGAGGGSIYNINTFLDNYHKIYDFLDFEFDYILKYMDHRFGWLDLYMQIAYFVCGKDYSINTNFTETWKTPHFRETDFSLVHAYKELY*
Ga0101669_123367Ga0101669_1233671F097482LFGSQNCISYNEVNLANYDHACFDKEMAEIVSKAITTN
Ga0101669_123852Ga0101669_1238523F021056KDLLEKWQILGLSFMMMSKTPEDFHDLVKQEFGYIWDGKGWIKEVEYQ*
Ga0101669_124785Ga0101669_1247851F103090SIRRLCGMSEQPKRTETVEEYLQRGGTITRLPDSPNRFYGVEMDSPTTVKPTSEMTETVEYKRVSWKDVEHDEKIIETDDQYWKAVDAAVDKLMSKYS*
Ga0101669_127347Ga0101669_1273472F076169SGVIAKKPTKNLTALNVKGPILSMPVSWAINVVPQMKVHNKALNNDMDLLIFN*
Ga0101669_127356Ga0101669_1273561F067840MVKKLGRRYRQTKKAIYTAYDILSLIVILLSFDKLLSSKTRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK*
Ga0101669_128488Ga0101669_1284882F097360MNLFQESKNILDKDGKVNPLGPYGRQKLTGREMSTYFRRNKVKDAKLRKAVEVAL
Ga0101669_128836Ga0101669_1288361F059469TIIGEGVKLDSQVHVGNNVAGFVNAVMKKDEATAKLEHTKLAYVNYQNMSATGDDKFVGVIFMSLKGKWSNVVRNIDELVQNLAVRTIYVMSPDQNDLFPQTTFKF*
Ga0101669_129037Ga0101669_1290371F018382GNHQIKIEDEKIKSKPINKNDGKESKAGFAMTKPKPKKIGTNDAMKVSFKFMSLI*
Ga0101669_129711Ga0101669_1297111F097518MTMYEIRVTQTCRDYYRLEADNPKDAEQQLWAALRSGIRGNIELNDTIDSAPTIDY
Ga0101669_130530Ga0101669_1305301F042010VVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAIFGSSSGLVA*
Ga0101669_130639Ga0101669_1306392F003869MAKRQYNRTHFYSICSMMTDEKVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVN*
Ga0101669_131036Ga0101669_1310362F097518MTNYEIRVTQVTRDYYRLEAKSPEEAEKLLWTALSTGIMGNIELNDTNDNPPKIDYTVQVSPEGEVII*
Ga0101669_131101Ga0101669_1311012F039683MNYDEILKCYEGHTDLHANTSFEFGLMNVTYYMLFRDHDLLEYATLQTGTN*
Ga0101669_132039Ga0101669_1320391F098024KNVEMMFDIIITSLKLGAGCILLYIMYQFSQGMEAWVELDRMMR*
Ga0101669_132230Ga0101669_1322301F005467MQYYYVMCQKGALIHRAYVQLDSESADILHDALEENYDICQVCDVKASEVDPDILI*

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