NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097229

Metagenome / Metatranscriptome Family F097229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097229
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 87 residues
Representative Sequence MTFKVQRKMCSTCIYRPDSPLDLAKLEADVADKHIGFRGHRICHHSDDVCCRGFWEAHKDEFQLGQVAQRLNLVEFVNVDNLKP
Number of Associated Samples 98
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 73.08 %
% of genes near scaffold ends (potentially truncated) 20.19 %
% of genes from short scaffolds (< 2000 bps) 64.42 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.85

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (87.500 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil
(9.615 % of family members)
Environment Ontology (ENVO) Unclassified
(29.808 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(24.038 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.54%    β-sheet: 10.71%    Coil/Unstructured: 68.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.85
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Structural matches with PDB biological assemblies

PDB IDStructure NameBiol. AssemblyTM-score
6sbeSTRUCTURE OF TYPE II TERPENE CYCLASE MSTE_D109N FROM SCYTONEMA IN COMPLEX WITH GERANYLGERANYL DIHYDROXYBENZOATE (SUBSTRATE)10.50297
6sbdSTRUCTURE OF TYPE II TERPENE CYCLASE MSTE_D109A FROM SCYTONEMA IN COMPLEX WITH MEROSTEROLIC ACID A (PRODUCT)10.5018
6sbbSTRUCTURE OF TYPE II TERPENE CYCLASE MSTE FROM SCYTONEMA (APO)10.50131
6sbgSTRUCTURE OF TYPE II TERPENE CYCLASE MSTE_R337A FROM SCYTONEMA IN COMPLEX WITH GERANYLGERANYL DIHYDROXYBENZOATE (SUBSTRATE)10.50111
6sbfSTRUCTURE OF TYPE II TERPENE CYCLASE MSTE_Y157F FROM SCYTONEMA (APO)10.50054

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF04545Sigma70_r4 2.88
PF02195ParBc 1.92
PF00589Phage_integrase 1.92
PF13456RVT_3 1.92
PF01068DNA_ligase_A_M 1.92
PF13671AAA_33 0.96
PF12083DUF3560 0.96
PF04448DUF551 0.96
PF10520Lipid_desat 0.96
PF07589PEP-CTERM 0.96
PF12684DUF3799 0.96
PF13560HTH_31 0.96
PF01022HTH_5 0.96
PF01726LexA_DNA_bind 0.96
PF12762DDE_Tnp_IS1595 0.96
PF12957DUF3846 0.96
PF05876GpA_ATPase 0.96
PF02075RuvC 0.96
PF13245AAA_19 0.96
PF05772NinB 0.96
PF14359DUF4406 0.96
PF13328HD_4 0.96
PF08719NADAR 0.96
PF12843QSregVF_b 0.96
PF02511Thy1 0.96
PF13730HTH_36 0.96
PF00149Metallophos 0.96
PF04851ResIII 0.96
PF01724DUF29 0.96
PF00078RVT_1 0.96
PF12323HTH_OrfB_IS605 0.96
PF12224Amidoligase_2 0.96
PF12705PDDEXK_1 0.96
PF07460NUMOD3 0.96
PF00271Helicase_C 0.96
PF14579HHH_6 0.96
PF13361UvrD_C 0.96
PF10049DUF2283 0.96
PF04266ASCH 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 1.92
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 1.92
COG0817Holliday junction resolvasome RuvABC endonuclease subunit RuvCReplication, recombination and repair [L] 0.96
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.96
COG2411Predicted RNA-binding protein, contains PUA-like ASCH domainGeneral function prediction only [R] 0.96
COG3097Uncharacterized conserved protein YqfB, UPF0267 familyFunction unknown [S] 0.96
COG3236N-glycosidase YbiA/RibX (riboflavin biosynthesis, damage control), NADAR superfamilyDefense mechanisms [V] 0.96
COG4405Predicted RNA-binding protein YhfF, contains PUA-like ASCH domainGeneral function prediction only [R] 0.96
COG5525Phage terminase, large subunit GpAMobilome: prophages, transposons [X] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.15 %
UnclassifiedrootN/A3.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000579|AP72_2010_repI_A01DRAFT_1032567All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300002161|JGI24766J26685_10040823All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300002460|C687J35021_10000503Not Available30594Open in IMG/M
3300005096|Ga0072503_161052All Organisms → cellular organisms → Bacteria5478Open in IMG/M
3300005336|Ga0070680_101508281All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300005526|Ga0073909_10056198All Organisms → cellular organisms → Bacteria1444Open in IMG/M
3300005530|Ga0070679_100361788All Organisms → cellular organisms → Bacteria1398Open in IMG/M
3300005664|Ga0073685_1186478All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300005764|Ga0066903_106296579All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300005841|Ga0068863_100172119All Organisms → cellular organisms → Bacteria2077Open in IMG/M
3300005843|Ga0068860_100845146All Organisms → cellular organisms → Bacteria930Open in IMG/M
3300005987|Ga0075158_10344010All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300006638|Ga0075522_10069016All Organisms → cellular organisms → Bacteria1985Open in IMG/M
3300006639|Ga0079301_1000042All Organisms → cellular organisms → Bacteria60267Open in IMG/M
3300006940|Ga0079099_1150361All Organisms → Viruses → Predicted Viral1289Open in IMG/M
3300007363|Ga0075458_10003032All Organisms → cellular organisms → Bacteria5484Open in IMG/M
3300008266|Ga0114363_1024242All Organisms → cellular organisms → Bacteria5323Open in IMG/M
3300008470|Ga0115371_10701260All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300009083|Ga0105047_10101711All Organisms → cellular organisms → Bacteria3620Open in IMG/M
3300009146|Ga0105091_10026768All Organisms → cellular organisms → Bacteria2498Open in IMG/M
3300009149|Ga0114918_10005558All Organisms → cellular organisms → Bacteria10810Open in IMG/M
3300009176|Ga0105242_10000110All Organisms → cellular organisms → Bacteria59335Open in IMG/M
3300009177|Ga0105248_10000102All Organisms → cellular organisms → Bacteria94720Open in IMG/M
3300009500|Ga0116229_10180210All Organisms → cellular organisms → Bacteria1830Open in IMG/M
3300009551|Ga0105238_11306041All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300009701|Ga0116228_10443117All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300009709|Ga0116227_10314993All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300009787|Ga0116226_10352082All Organisms → cellular organisms → Bacteria1510Open in IMG/M
3300009983|Ga0105041_122389All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300010045|Ga0126311_10773071All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300010233|Ga0136235_1020290Not Available1522Open in IMG/M
3300010339|Ga0074046_10606742All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300010343|Ga0074044_10045514All Organisms → cellular organisms → Bacteria3033Open in IMG/M
3300010358|Ga0126370_10820538All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300010396|Ga0134126_11147384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae → Sporomusa865Open in IMG/M
3300010399|Ga0134127_12340387All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300010400|Ga0134122_11664925All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300011407|Ga0137450_1007929All Organisms → cellular organisms → Bacteria1588Open in IMG/M
3300011407|Ga0137450_1083048All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300011413|Ga0137333_1000881All Organisms → cellular organisms → Bacteria7742Open in IMG/M
3300011421|Ga0137462_1030479All Organisms → Viruses → Predicted Viral1103Open in IMG/M
3300011424|Ga0137439_1000541All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3852Open in IMG/M
3300011428|Ga0137456_1078287All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300012164|Ga0137352_1001403All Organisms → cellular organisms → Bacteria3469Open in IMG/M
3300012172|Ga0137320_1000988All Organisms → cellular organisms → Bacteria5080Open in IMG/M
3300012361|Ga0137360_10437284All Organisms → Viruses → Predicted Viral1107Open in IMG/M
3300012582|Ga0137358_10120234All Organisms → cellular organisms → Bacteria1785Open in IMG/M
3300012676|Ga0137341_1044535All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300012929|Ga0137404_11285014All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300012944|Ga0137410_10110800All Organisms → cellular organisms → Bacteria2048Open in IMG/M
3300012944|Ga0137410_12070415All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300012956|Ga0154020_10007187All Organisms → cellular organisms → Bacteria13017Open in IMG/M
3300012956|Ga0154020_10446004All Organisms → cellular organisms → Bacteria1096Open in IMG/M
3300014501|Ga0182024_10024690All Organisms → cellular organisms → Bacteria10665Open in IMG/M
3300014811|Ga0119960_1016568All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300014879|Ga0180062_1151152All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300015024|Ga0167669_1103802All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300015360|Ga0163144_10001782All Organisms → cellular organisms → Bacteria50395Open in IMG/M
3300015374|Ga0132255_102592245All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300017792|Ga0163161_10857282All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300020060|Ga0193717_1070596All Organisms → cellular organisms → Bacteria1169Open in IMG/M
3300020199|Ga0179592_10341029All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300021420|Ga0210394_10959358All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300022878|Ga0247761_1005869All Organisms → cellular organisms → Bacteria2042Open in IMG/M
(restricted) 3300023112|Ga0233411_10000670All Organisms → cellular organisms → Bacteria10196Open in IMG/M
3300024262|Ga0210003_1013310All Organisms → cellular organisms → Bacteria5432Open in IMG/M
3300025012|Ga0209727_1000490Not Available43090Open in IMG/M
3300025635|Ga0208147_1002627All Organisms → cellular organisms → Bacteria5484Open in IMG/M
3300025924|Ga0207694_10470300All Organisms → cellular organisms → Bacteria1051Open in IMG/M
3300025941|Ga0207711_10154914All Organisms → cellular organisms → Bacteria2070Open in IMG/M
3300026300|Ga0209027_1109422All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300026320|Ga0209131_1249228All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300026320|Ga0209131_1349950All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300026480|Ga0257177_1008562All Organisms → cellular organisms → Bacteria1317Open in IMG/M
3300026557|Ga0179587_10580739All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300027499|Ga0208788_1000063All Organisms → cellular organisms → Bacteria60294Open in IMG/M
3300027675|Ga0209077_1060423All Organisms → cellular organisms → Bacteria1037Open in IMG/M
3300027805|Ga0209229_10002129All Organisms → cellular organisms → Bacteria8119Open in IMG/M
3300027821|Ga0209811_10020042All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2185Open in IMG/M
3300027860|Ga0209611_10244117All Organisms → cellular organisms → Bacteria1076Open in IMG/M
(restricted) 3300027861|Ga0233415_10008590All Organisms → cellular organisms → Bacteria4041Open in IMG/M
3300027910|Ga0209583_10046240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans1515Open in IMG/M
3300027968|Ga0209061_1101526All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300028381|Ga0268264_10795502All Organisms → cellular organisms → Bacteria944Open in IMG/M
3300028800|Ga0265338_10001083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales45206Open in IMG/M
3300028800|Ga0265338_10143188All Organisms → Viruses → Predicted Viral1869Open in IMG/M
3300028806|Ga0302221_10370278All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300028882|Ga0302154_10466583All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300029907|Ga0311329_10781192All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300029917|Ga0311326_10006517All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7527Open in IMG/M
3300029956|Ga0302150_10114200All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300030520|Ga0311372_11143635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1005Open in IMG/M
3300031232|Ga0302323_100194079All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2048Open in IMG/M
3300031539|Ga0307380_10018087All Organisms → cellular organisms → Bacteria8504Open in IMG/M
3300031565|Ga0307379_10039850Not Available5531Open in IMG/M
3300031565|Ga0307379_10605641All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300031707|Ga0315291_10084264All Organisms → Viruses → Predicted Viral3469Open in IMG/M
3300031708|Ga0310686_109373880All Organisms → cellular organisms → Bacteria1086Open in IMG/M
3300031726|Ga0302321_102022835All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300031857|Ga0315909_10375926All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300031951|Ga0315904_10263068All Organisms → cellular organisms → Bacteria1643Open in IMG/M
3300032053|Ga0315284_11936717All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300032397|Ga0315287_10260571All Organisms → Viruses → Predicted Viral2037Open in IMG/M
3300032515|Ga0348332_13170495All Organisms → cellular organisms → Bacteria1010Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil9.62%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.73%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated4.81%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.85%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.88%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.88%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil2.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.92%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.92%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.92%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.92%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.92%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.92%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.92%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.92%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.92%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.92%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.92%
Active SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge1.92%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.96%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.96%
AquaticEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic0.96%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.96%
AquaticEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.96%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.96%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.96%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.96%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.96%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.96%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.96%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.96%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Switchgrass AssociatedHost-Associated → Plants → Phyllosphere → Leaf → Endophytes → Switchgrass Associated0.96%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge0.96%
Wastewater EffluentEngineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000579Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01EnvironmentalOpen in IMG/M
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300002460Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2EnvironmentalOpen in IMG/M
3300005096Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005664Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USAEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005987Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNAEngineeredOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006940Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_02_SludgeMetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009083Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (megahit assembly)EnvironmentalOpen in IMG/M
3300009146Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009787Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009983Switchgrass associated microbial communities from Austin, Texas, USA - LS_189 metaGHost-AssociatedOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010233Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011407Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2EnvironmentalOpen in IMG/M
3300011413Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2EnvironmentalOpen in IMG/M
3300011421Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2EnvironmentalOpen in IMG/M
3300011424Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2EnvironmentalOpen in IMG/M
3300011428Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2EnvironmentalOpen in IMG/M
3300012164Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2EnvironmentalOpen in IMG/M
3300012172Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2EnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012676Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT433_2EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012956Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MGEngineeredOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014811Aquatic viral communities from ballast water - Michigan State University - AB_ballast waterEnvironmentalOpen in IMG/M
3300014879Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10DEnvironmentalOpen in IMG/M
3300015024Arctic sediment microbial communities from supraglacial cryoconite, Rabots glacier, Tarfala, Sweden (Sample Rb cryoconite)EnvironmentalOpen in IMG/M
3300015360Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300020060Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300022878Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025012Soil microbial communities from Rifle, Colorado, USA - Groundwater C1EnvironmentalOpen in IMG/M
3300025635Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026480Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-BEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027499Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027675Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027860Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027968Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028806Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029956Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
AP72_2010_repI_A01DRAFT_103256723300000579Forest SoilMFKVQRKPCATCIYRSDSVLDLGKLEAEIADPHMKGFFSGYRICHHSDDACCRGFWSRHKNKFAMGQIAQRLGLVEFVDVDTLAELKRKGASNAKAR*
JGI24766J26685_1004082343300002161Freshwater And SedimentSTCIYRPDSPLDLAKLEADVADGYGGFKGHRVCHHSDNACCAGFWARHKNEFQLGQIAQRLGMVEFVEDDKFRESGKRVEP*
C687J35021_10000503493300002460SoilVKVCSRQCPTCIYRPDSLFDLKKLEAQIADPYMAGFFKGHRVCHHTKDACCRGFWNKHKDSFALGQVAQRMNVVIFVAPGG*
Ga0072503_16105223300005096MarineMFRVQKKMCSTCIYRPDSTLDLDSLEDAVRDPHVGFKAHRICHHSADVCCRGFWEAHKGEFPAGQMAQRLGVVDFVDVDNLIEVTK*
Ga0070680_10150828123300005336Corn RhizosphereVAMSFPVQRRQCATCIYRKDSPLDLKKLEREIADPYMKGFFSGHRICHHSDTACCAGFFARHKDHFPLGQIAQRLGFVEYVEHDKMVGIKRTTR*
Ga0073909_1005619853300005526Surface SoilVKRGVGFKVQRRMCRTCIYHKGSPLDLAELERQVRDPHMGFKGFRICHHSKDACCRGFWDMHKDEFAVGQVAQRLGLVCFVDIDIIKRITHRERKVK*
Ga0070679_10036178843300005530Corn RhizosphereMSFPVQRRQCATCIYRKDSPLDLKKLEREIADPYMKGFFSGHRICHHSDTACCAGFFARHKDHFPLGQIAQRLGFVEYVEHDKMVGIKRTTR*
Ga0073685_118647813300005664AquaticMFLVQRKQCSTCIYRADSPLDLNQLEEQVKDPYGGFSGHRVCHHTGKGNEACCAGFWARHKDEFQLGQVAQRMGMV
Ga0066903_10629657923300005764Tropical Forest SoilMKEVPADLKTELGTLKVQARPCDTCIYRSDSPLDLESLEEVVRDPYIGFKGFRVCHHSDDACCRGFWNRHKDAFAAGQIAQRLGLVEYVNDD
Ga0068863_10017211913300005841Switchgrass RhizosphereMLRVQRRQCATCIYRADSPLDIVKLENDVRDPYVGFKGHRICHHSRDAVCAGFWARHKWAFALGQIAQRLGMVEY
Ga0068860_10084514613300005843Switchgrass RhizosphereMFKVQKRQCETCIYRKSSPLDIKRLEAQVADKYGGYKGHRICHHSKDACCRGFWDRHKDQFQMGQLAQ
Ga0075158_1034401013300005987Wastewater EffluentMTFKVQEKMCKTCIYRPDSPLDLEKLEDQVRDNYGGFKGHRICHHASEACCAGFWAKHKDEFQMGQIAQRLNMVELVNIDETPA*
Ga0075522_1006901663300006638Arctic Peat SoilMRSIGIKVQKRACSTCIYRKDSTLDIKELEREIADPRMPGFFRGHRICHHSKDVACRGFWNRHKNHFTLGQLAQRFRAVFFVSVDTLSRRKV*
Ga0079301_1000042853300006639Deep SubsurfaceMRVQKTQCSTCIYRPDSPLDLAKLEADVADGYGGFKGHRICHHSDDACCAGFWARHKNEFQLGQIAQRFGVVEFVQDDTLKGKTK*
Ga0079099_115036133300006940Anaerobic Digestor SludgeMFRVQNRQCSTCIYRADNPLDIVELENQVRDPYGGFSGHRICHHTDGDQEACCAGFWARHKDEFQLGQVAQRLGMVRYVDVDTLAKDKE*
Ga0075458_1000303293300007363AqueousMTFKVQRKMCSTCIYRPDSPLDLAKLEADVADKHIGFRGHRICHHSDDVCCRGFWEAHKDEFQLGQVAQRLNLVEFVNVDNLKP*
Ga0114363_102424233300008266Freshwater, PlanktonMRVQKTQCSTCIYRPDSPLDLAKLEAAVADGYGGFTGHRICHHSDDACCAGFWARHKNEFQLGKIAQRLGMVEFVEDDTLKGKTK*
Ga0115371_1070126033300008470SedimentMKFKVQKKLCSTCIYRPSSPLDLKMLEDQVRDEYVGFKGHRMCHHSKDVCCRGFWEAHKDEFPMGQIAQRMGLVEFVREDTL*
Ga0105047_1010171133300009083FreshwaterMTGFRVQSKQCSTCIYRPDSPLDLENLESQIADPYGGFTGYRICHNSDDACCAGFWAKHKDEFPMGQVSQRLNLVDLVEDDRLKKTPA*
Ga0105091_1002676823300009146Freshwater SedimentMCATCIYRPDSPLDLRRLENAIRDNYGGFKDYRVCHHSDDVCCRGFWLHHKNKFAMGQIAQRLNCVEFVDVDKS*
Ga0114918_10005558123300009149Deep SubsurfaceMFKVQRTACSTCIFKKSSPLDLDRLLNEIRDPYGGFSGHRICHHSEDACCAGFWKNHKDEFALGQIAQRLGMVEKVDADILPLKESDDVRS*
Ga0105242_10000110443300009176Miscanthus RhizosphereLTGFAVQARACRTCIYRKDSPLDLAQLEAAVADDYGGFHSFRICHHSRDACCRGFWDRHKNKFALGQVAQRLGMVRFVKDDIPNDR*
Ga0105248_100001021413300009177Switchgrass RhizosphereVAVGVGWYCRDAGCVGGDGRVVAPVTGFEVQKRQCATCIYRKDSPLDLKALERQIADPYGGFVGHRICHHSDTACCRGFWSRHKNKFPLGQIAQRLGMVRYVEHDKA*
Ga0116229_1018021043300009500Host-AssociatedMLTVQRRLCKTCIYRPDSALDLTKLENDVRDPNMAGFFIGSRICHHSEDAVCRGFWNAHRNHFTAGQIAQRLGMVRFVDQDTLA*
Ga0105238_1130604123300009551Corn RhizosphereLTGFAVQARACRTCIYRKDSPLDLAQLEAAMADDYGGFHSFRICHHSRDACCRGFWDRHKNKFALGQVAQRLGMVRFVKDDIPNDR*
Ga0116228_1044311733300009701Host-AssociatedMTFKVQSRPCESCIYRADSPLDLDRLEQCVKDKYGFFNGHRICHHTKDVCCRGFWNLHKDEFPLGQLAQRLDFVEFVDVDDWKQNENGAGKRP*
Ga0116227_1031499323300009709Host-AssociatedMTGFLVMSKRCSTCIYRKDSHFDLKKHEDEVRDPHMGFKGHRICHHSSKSKPACCNGFWTEHKDEFAAGQLAQRLNLVEFIEPGKSA*
Ga0116226_1035208223300009787Host-AssociatedMLTVQRRLCKTCIYRPDSALDLTKLENDVRDPNMSGYFIGSRICHHSEDVVCRGFWNAHRNHFTAGQIAQRLGMVRFVDVDTLA*
Ga0105041_12238923300009983Switchgrass AssociatedMTFKVQARMCATCIYRPDSPLDIEKLENDVRDPYVGFKGHRICHHSDDVCCRGFWEAHKDEFPAGQIAQRLGLVEFVNVDTLGDRHGE*
Ga0126311_1077307123300010045Serpentine SoilVGFKVMDKPCGTCIYRKDSPLDLRGLEDQVRSPHGGFSGHRVCHHSEKGGGCCRGFWNAHKDEFQAGQIAQRLGVVDFIPADDEEQAA*
Ga0136235_102029033300010233FreshwaterMFKVQSKQCSTCIYRKSSPLDLKKLEGDIKDNYGGFYGYRICHHSDDVCCRGFWNRHKDKFSLGQIAQRLGFVKFVSEDRLKRN*
Ga0074046_1060674213300010339Bog Forest SoilMSFHVQKAACSTCIYRKDSPLDLEKLEGEIADAYGGFNGYRECHHAAPGSGVCCRGFWNRHKDRFAAGQIAQRLDLV*
Ga0074044_1004551443300010343Bog Forest SoilVSKQAEEAGMTFRMQRYRCRTCIYRKDSALDLKVLEDAVRDRYVGFRGYRICHHSKALCCRGFWDRHKDEFQLGQIVQRLNLVEFVTEDKLA*
Ga0126370_1082053823300010358Tropical Forest SoilMFKVQRRRCKTCIYRKDSTLDIEKLENDVRDKYMGFKGYRICHHSKDVCCKGFWDHHKDEFQAGQIAQRLKLVQFVDVDILT*
Ga0134126_1114738423300010396Terrestrial SoilMPDRIRPREVDSGFRVQSKACATCIYRKDSPLNIKALEAQVADGYGGFRGHRICHHSKDVCCRGFWNRHKDKFQLGRIAQRLGMVRFVKVDNA*
Ga0134127_1234038723300010399Terrestrial SoilMFEVQAVACSSCIYRKDSPLDVKKLEATIADGYGGFRSFRICHHSDSACCRGFWNRHKDKFQVGQLAQRLRAVAFVRHDNQKEKRR*
Ga0134122_1166492513300010400Terrestrial SoilMSEGFRVQAKQCATCISRPGSPLDLKKLEAEVADDYGGFKTFRVCHHSEDACCRGFWNRHKDEFQVAQIAQRLNLVKFVEAEP*
Ga0137450_100792933300011407SoilMGFGFKVQKRACATCIYRKDSSLDIKKLENDVRDRFMGFKGHRICHHSKDVCCRGFWNRHKDEFPAGQIAQRLKLVKFVSVDTLRGKG*
Ga0137450_108304823300011407SoilMRKQDKPGFKVMKKPCPTCIYRKDSSLDLKKLEADVADKYGGFKGYRICHHSKDVCCRGFWNKHKDEFAAGQIAQRLNCVVFVEGNDERKTKRPD*
Ga0137333_100088133300011413SoilMGFKVRRTQCNTCIYRKDSPLDLKKLEDQVRDKYVGFKGHRICHHSKGICCRGFWVRHRDEFAAGQIAQRLNLVEFTNGDTSRTDGLLGM*
Ga0137462_103047913300011421SoilVQSKQCNTCIYRKDSPLDLKQLEAQIADPHGGFKGHRICHHSEDACCRGFWNRHKDKFAIGQIAQRLDAVMFVKDDNAESV*
Ga0137439_100054133300011424SoilMSFKVQRKQCATCIYRADSPLDLAKLEADVADPCGFGFKGHRICHHSAPGSDSCCRGFWNRHKDEFPAGQIAQRLGLVEFIK*
Ga0137456_107828723300011428SoilMRKKDKPGFKVMKKSCATCIYRKDSSLDLKKLEADVADKYGGFKGYRICHHSKDVCCRGFWNKHKDEFAAGQIAQRLNCVVFVEGNDERKTKRPR*
Ga0137352_100140333300012164SoilMGFKVRRTQCNTCIYRKDSPLDLKKLEDQVRDKYVGFKGHRICHHSKGICCRGFWVRHRDEFAAGQIAQRLNLVEFTNGDTSRTEGLLGM*
Ga0137320_100098823300012172SoilVNVDLGFKVQRRMCATCIYRPDSALDLKKLERDVADKHMAGYFRGHRICHHSKDVCCRGFWDKHKDDFTAGQVAQRLKLVRFVDVDTLKGKV*
Ga0137360_1043728423300012361Vadose Zone SoilMKVQKVACSTCIYRKDSPLSIKKLEADVADKYGGFKGYRICHHSKDVCCRGFWNRHKNEFALGQIAQRLKLVEFVDVDTLTTRKS*
Ga0137358_1012023423300012582Vadose Zone SoilMSFRVQKKQCKTCIYRSDCPLDIAKLEDQVRDKYIGFSGHRICHHPSKQEPICCRGFWNLHKDEFAAGQIAQRLNCVEFVTVDYLA*
Ga0137341_104453513300012676SoilVSRRHRGFVVQRKMCATCIYRPDSVLDLAELERQVKDRHMGFRGYRICHHSKDACCRGFWEAHKNEFALGQIAQRLNFVRFVDDDLLT*
Ga0137404_1128501433300012929Vadose Zone SoilMTFKVQEKQCSTCIYRIESPLDLKVLEDQVRDPHVGFKGHRICHNSRDVCCRGFWNRHKDEFPMGQIAQRLNFVEFVKVREK*
Ga0137410_1011080033300012944Vadose Zone SoilMMFKVQHKPCASCIYRKDSPLDLAKLEREIADPYGGFKGWRICHNSKDVCCRGFWNRHKDSFALGQIAQRLGMVEFVKEKTDGETRYRP*
Ga0137410_1207041523300012944Vadose Zone SoilAMTFKVQRRMCATCIYRPDSTLDLVKLENDVRDPYVGFKGHRVCHHAPDRSAVCCRGFWDRHKDEFTAGQIAQRLNFVEFVDVDRFAKGAV*
Ga0154020_10007187193300012956Active SludgeMFKVQKTQCSTCIYRPDSPLDLEKLEAEIADSYGGFKGHRICHHSKDVCCAGFWARHKDEFQLGQVAQRLQGVEFVVCDTLSSKKDIENGSISD*
Ga0154020_1044600423300012956Active SludgeMFKVQKTQCSTCIYRPDSPLDLEKLEAEIADPYGGFKGHRICHHSADVCCAGFWARHKNEFQLGQVAQRLQGVEFVVCDTLSSKKDIENDGDLD*
Ga0182024_10024690243300014501PermafrostMIGDTFRVQRRMCDTCIYRSDCPLELAMLEEQVRDPHIGFRSYRVCHHSDDVCCRGFWNAHKDEFPVGQIAQRLGLVELVDVDLLR*
Ga0119960_101656823300014811AquaticMAEFEGFKVQRKQCSTCIYLTNSPLDLARLEAQVADKWGGFHSYRVCHHSEDVCCRGFWNRHKDKFAMGQIAQRLGFVRFVTVDTLAKEGTGK*
Ga0180062_115115223300014879SoilMLRVQKKQCETCIYRKDSPLDLKELEAAIADPYGGFKGHRICHHSKDACCQGFWKRHKDKFQLGQIAQRLNMVLFVQDDTLKGKKK*
Ga0167669_110380233300015024Glacier Forefield SoilMMSGFLVQTKPCSTCIYRKDSPLDIKKLEADVADSYGGFKGHRVCHHSDTACCRGFWNRHKDDFQMGQVAQRLGMVRMVDHDTLK*
Ga0163144_1000178253300015360Freshwater Microbial MatMTGFRVQSKQCSTCIYRPDSPLDLENLESQIADPYGGFTGHRICHNSDDACCAGFWAKHKDEFPMGQVSQRLNLVDLVEDDRLKKTPA*
Ga0132255_10259224523300015374Arabidopsis RhizosphereMTKRAEPKVVGFRVQRKACATCIYRADSPLDLAHLESQVADKFGGFRGHRVCHHSRDACCRGFWNRHKDEFQMGQIAQRLGFVVFVDDDIRR*
Ga0163161_1085728223300017792Switchgrass RhizosphereMTFKVQKKACATCIYRKDSSLDIKKLENDVRDKHMGFKGHRICHHSKDVCCRGFWNRHKNEFALGQIAQRLNMVEFVTVDTIKKGKS
Ga0193717_107059633300020060SoilMTFKVQKRMCSTCIYRPDSPLDIEKLESDVRDPYVGFSGHRVCHHSADVCCRGFWEAHKDEFPMGQVAQRLGFVEFVYVDTLQDNGT
Ga0179592_1034102913300020199Vadose Zone SoilMFKVQAKSCSTCIYRKDSSLDIKQLEEQIADGYGGFKGHRICHHSEDVCCRGFWNRHKDEFQAGQLAQRLGWVKFVNED
Ga0210394_1095935823300021420SoilMTFGLKVQKKMCATCIYRPDSTLDLKKLEADVADPHMAGFFKGSRTCHHSEDAVCRGFWEAHKDSFTAGQIAQRLNMVEFVDEDVFDPLHGRYG
Ga0247761_100586943300022878Plant LitterVGFKVQQRMCATCIYKPNFNLDLRKLENDVRDQHIGFKEHRICHHSKDVCCRGFWDAHKDEFQAGQLAQRLGCVEFVDVDTLE
(restricted) Ga0233411_10000670133300023112SeawaterMKTFKVQKTRCTTCIYKPDSPLDLKELEAQVADNYGGFQGHRICHHSEDACCSGFWKKNKDKFQLGQIAQRLGMVEEVEVDTLT
Ga0210003_101331033300024262Deep SubsurfaceMFKVQRTACSTCIFKKSSPLDLDRLLNEIRDPYGGFSGHRICHHSEDACCAGFWKNHKDEFALGQIAQRLGMVEKVDADILPLKESDDVRS
Ga0209727_1000490163300025012SoilVKVCSRQCPTCIYRPDSLFDLKKLEAQIADPYMAGFFKGHRVCHHTKDACCRGFWNKHKDSFALGQVAQRMNVVIFVAPGG
Ga0208147_100262793300025635AqueousMTFKVQRKMCSTCIYRPDSPLDLAKLEADVADKHIGFRGHRICHHSDDVCCRGFWEAHKDEFQLGQVAQRLNLVEFVNVDNLKP
Ga0207694_1047030023300025924Corn RhizosphereLTGFAVQARACRTCIYRKDSPLDLAQLEAAVADDYGGFHSFRICHHSRDACCRGFWDRHKNKFALGQVAQRLGMVRFVKDDIPNDR
Ga0207711_1015491413300025941Switchgrass RhizosphereVVAPVTGFEVQKRQCATCIYRKDSPLDLKALERQIADPYGGFVGHRICHHSDTACCRGFWSRHKNKFPLGQIAQRLGMVRYVEHDKA
Ga0209027_110942223300026300Grasslands SoilVGGVDPVRGFQVQRRMCATCIYRPTCALDVAKLENDVRDKHMGFKGHRVCHHAPDKSGICCRGFWDRHKDEFPAGQIAQRLRAVTFVDVDILVTRP
Ga0209131_124922823300026320Grasslands SoilMSGFRVMAKQCATCIYRKDSPLDIKKLEAQIKDRFMGFRTYRQCHHSRKGNTGCCRGFWNRHKDEFPAGQIAQRLNCVVFVNGQL
Ga0209131_134995013300026320Grasslands SoilMFKVQRKQCETCIYRKDSPLDLAQLEAAISDPYVGFRGWRICHHTDDVCCRGFSNRHKDEFQMG
Ga0257177_100856243300026480SoilMFKVQRKQCETCIYRKDSPLDLAQLEAAIADPHVGFRGWRICHHTDDVCCRGFWNRHKDEFQMGQIAQRLGFVEFV
Ga0179587_1058073933300026557Vadose Zone SoilMFKVQAKSCSTCIYRKDSSLDIKQLEEQIADGYGGFKGHRICHHSEDVCCRGFWNRHKDEFQAGQLAQRLGWVKFVNEDNQ
Ga0208788_1000063453300027499Deep SubsurfaceMRVQKTQCSTCIYRPDSPLDLAKLEADVADGYGGFKGHRICHHSDDACCAGFWARHKNEFQLGQIAQRFGVVEFVQDDTLKGKTK
Ga0209077_106042323300027675Freshwater SedimentMQEKSSVFKVQRRLCKTCIYRPSSTLDLKALEDQVRDPYVGFKDYRVCHHSIHACCRGFWNAHKDEFTLGQLAQRLNCVEFVNEETSVVDGMERRK
Ga0209229_1000212963300027805Freshwater And SedimentMRVQKTQCSTCIYRPDSPLDLAKLEADVADGYGGFKGHRVCHHSDNACCAGFWARHKNEFQLGQIAQRLGMVEFVEDDKFRESGKRVEP
Ga0209811_1002004253300027821Surface SoilVKRGVGFKVQRRMCRTCIYHKGSPLDLAELERQVRDPHMGFKGFRICHHSKDACCRGFWDMHKDEFAVGQVAQRLGLVCFVDIDIIKRITHRERKVK
Ga0209611_1024411723300027860Host-AssociatedMLTVQRRLCKTCIYRPDSALDLTKLENDVRDPNMAGFFIGSRICHHSEDAVCRGFWNAHRNHFTAGQIAQRLGMVRFVDQDTLA
(restricted) Ga0233415_1000859093300027861SeawaterMFKVQQKQCKTCIYRPESPLDLKTLEQAIADQHGGFKGHRICHHSDDVCCRGFWERHKNQFQMGQIAQRLNMVEYVNIDTLNQVNDQQTK
Ga0209583_1004624013300027910WatershedsCSTCIYRSDSPLDLKDLESAVADRFGGFRGHRICHHSDDVCCRGFWKRHKDKFAIGQIAQRLKMVEFVNVDTLSRHAKIEERER
Ga0209061_110152623300027968Surface SoilLFKVQAEACSTCIYRKDSPLDLNKLEAEIADGYGGFNGYRICHHSEDVCCRGFWNRHKDEFAAGQIAQRLDAVQFVTVDVSK
Ga0268264_1079550223300028381Switchgrass RhizosphereMFKVQKRQCETCIYRKSSPLDIKRLEAQVADKYGGYKGHRICHHSKDACCRGFWDRHKDQFQMGQLAQRLGW
Ga0265338_10001083243300028800RhizosphereMTFKVQAKPCSTCIYRKDSPLDLKALEDAVRDPHMGFKGHRICHHSDDVYCRGFWNAHKDEFTAGQVAQRLGLVEFVEVDTLK
Ga0265338_1014318873300028800RhizosphereMRQKMQKMLKVQSKQCETCIYRKDSSLDIKQLESQVADPNMEGYFKGHRICHHSKDVCCRGFWNRHKDQFTLGQIAQRLDLVEFVTENTPK
Ga0302221_1037027823300028806PalsaMKSGFKVQSKMCDTCIYRKDSPLDLQSLEAQIADKYGGFIGHRVCHHSKDVCCNGFWNAHKNEFQMGQVAQRLNMVKFVQVDSLKKKK
Ga0302154_1046658313300028882BogLAFKVQRKACATCIYRRDSPLNIKALEDQVRDKYMGFKGHRVCHHSKDACCRGFWNRHKNEFAMGQIAQRLKFVEFVDVDCRPPQATKGDLE
Ga0311329_1078119223300029907BogRKACATCIYRRDSPLNIKALEDQVRDKYMGFKGHRVCHHSKDACCRGFWNRHKNEFAMGQIAQRLKFVEFVDVDCRPPQATKGDLE
Ga0311326_10006517173300029917BogKLAFKVQRKACATCIYRRDSPLNIKALEDQVRDKYMGFKGHRVCHHSKDACCRGFWNRHKNEFAMGQIAQRLKFVEFVDVDCRPPQATKGDLE
Ga0302150_1011420043300029956BogMFKVQARACPTCIYRSDSPLDIRKLEADVADKYGGFHGWRVCHHTRDVCCAGFWARHRNKFALGQIAQRLGLVE
Ga0311372_1114363523300030520PalsaMADTSADRDGFLVQDRPCSTCIYRKDSTLDIKKLEADVADKHGGFKGHRICHHSKDACCRGFWNRHKDKFAMGQIAQRLGLVRFVRDDILKT
Ga0302323_10019407913300031232FenMSYTFKVQRRLCATCIYRPDTPLDLAKLENDVRDRYMGFRGHRICHHSDDVCCRGFWNAHKDAFPAGQIAQRLDLVEFVDVDTLADPKPTRKRK
Ga0307380_1001808723300031539SoilMKEKLGFKVQKVQCKTCIYRPDSPLDIQKLEADVADSYGGFKGHRICHHSVDACCAGFWARHKDKFQLGQIAQRLGMVTFVELETRT
Ga0307379_1003985013300031565SoilMKEKLGFKVQKVQCKTCIYRPDSPLDIQKLEADVADSYGGFKGHRICHHSVDACCAGFWARHKDKFQLGQIAQRLGMVTFVELET
Ga0307379_1060564123300031565SoilMFKVQAKQCSSCIYHTDSPLDLGKLEADVADGYGGFNGHRTCHHSDDVCCRGFWNKHKDKFQAGQIAQRLDAVEFVDVDKFSA
Ga0315291_1008426443300031707SedimentVSRYGFKVQRRMCTTCIYRKDSPLSLKKLEADVADKFGGFRGHRICHHSKDVCCRGFWQRHKDKFAAGQIAQRLGLVVFVEVDTLKR
Ga0310686_10937388023300031708SoilMTFKVQRKPCSTCIYRADSTLDLAALEDAVRDEHVGFKGHRICHHSNDACCRGFWNAHKDEFAAGQIAQRLNFVEFVDDDNLSSKGVNPC
Ga0302321_10202283533300031726FenIYRPDTPLDLAKLENDVRDRYMGFRGHRICHHSDDVCCRGFWNAHKDAFPAGQIAQRLDLVEFVDVDTLADPKPTRKRK
Ga0315909_1037592623300031857FreshwaterMRVQKTQCSTCIYRPDSPLDLAKLEAAVADGYGGFTGHRICHHSDDACCAGFWARHKNEFQLGKIAQRLGMVEFVEDDTLKGKTK
Ga0315904_1026306823300031951FreshwaterMRVQKTQCSTCIYRPDSPLDLAKLEADVADGYGGFKGHRVCHHSDDACCAGFWARHKNEFQLGQIAQRLGMVEFVEDDTLKGKTK
Ga0315284_1193671713300032053SedimentMFKVQKKSCSTCIYRKDSPLDLKLLEAQVADKYGGFKGHRVCHHSKDVCCRGFWNRHKDKFQLGQIAQRMGWVRYVEVDTLKEKK
Ga0315287_1026057143300032397SedimentVTKGFKVQKKMCSTCIYRPDSTLDLKVLEAQVADKYGGFKGHRICHHSDGACCQGFWNRHKDEFAAGQIAQRLGLVVFVEEDV
Ga0348332_1317049523300032515Plant LitterRRPCSTCIYRADSTLDLAALEDAVRDEHVGFKGHRICHHSDDACCRGFWNAHKDEFAAGQIAQRLNFVEFVDDDNLSSKGVNPC

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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