3300009983: Switchgrass associated microbial communities from Austin, Texas, USA - LS_189 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009983
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127588 | Ga0105041
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA - LS_189 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32775502
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Leaf → Endophytes → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y
F004171	Metagenome / Metatranscriptome	449	Y
F037949	Metagenome	167	Y
F039842	Metagenome / Metatranscriptome	163	Y
F097229	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105041_111262	Not Available	664
Ga0105041_120371	Not Available	528
Ga0105041_122389	All Organisms → cellular organisms → Bacteria	509
Ga0105041_122871	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105041_111262	Ga0105041_1112621	F039842	MKLIIGRPDETEVVLAEQVDGAWKPNPNIASEMVTFLQGADPEQFEMWVEEAE*
Ga0105041_118290	Ga0105041_1182901	F004171	AKQTELVQKFVLRSRVGIFVDERTQSTILDPKLTF*
Ga0105041_120371	Ga0105041_1203711	F000255	MGWIGCVRREKSRRDFVARAFALTALVHPVLHRVSCGYETIPNAPKHYETHQNMSLWSNGVDRVCSLQKIPMRFHGTNLSIN
Ga0105041_122389	Ga0105041_1223892	F097229	MTFKVQARMCATCIYRPDSPLDIEKLENDVRDPYVGFKGHRICHHSDDVCCRGFWEAHKDEFPAGQIAQRLGLVEFVNVDTLGDRHGE*
Ga0105041_122871	Ga0105041_1228711	F037949	MRNGQPPERPDFLNHPSQRVRARQAQIERYRVKLERTYHSWLTCRSPELKEMLEAKMAEYEERIDQLERLNRALTGTDDAFD*