3300002460: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2

Overview

Basic Information

• IMG/M Taxon OID: 3300002460
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056898 | Ga0005056
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 908988387
• Sequencing Scaffolds: 30
• Novel Protein Genes: 31
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas suwonensis	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015326	Metagenome / Metatranscriptome	255	Y
F016408	Metagenome / Metatranscriptome	247	Y
F024972	Metagenome / Metatranscriptome	203	Y
F030363	Metagenome	185	Y
F030996	Metagenome / Metatranscriptome	183	Y
F033383	Metagenome / Metatranscriptome	177	Y
F033485	Metagenome / Metatranscriptome	177	Y
F035129	Metagenome / Metatranscriptome	173	Y
F037704	Metagenome / Metatranscriptome	167	Y
F040284	Metagenome	162	Y
F046735	Metagenome / Metatranscriptome	151	Y
F050468	Metagenome / Metatranscriptome	145	Y
F059829	Metagenome / Metatranscriptome	133	Y
F060593	Metagenome / Metatranscriptome	132	Y
F061881	Metagenome / Metatranscriptome	131	Y
F066733	Metagenome / Metatranscriptome	126	N
F073120	Metagenome / Metatranscriptome	120	Y
F075390	Metagenome / Metatranscriptome	119	Y
F075437	Metagenome	119	Y
F077980	Metagenome / Metatranscriptome	117	Y
F082441	Metagenome	113	Y
F087386	Metagenome / Metatranscriptome	110	Y
F097229	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J35021_10000503	Not Available	30594
C687J35021_10000750	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	24894
C687J35021_10002463	Not Available	13136
C687J35021_10002920	All Organisms → cellular organisms → Bacteria	11959
C687J35021_10008201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6381
C687J35021_10011987	All Organisms → cellular organisms → Bacteria	4986
C687J35021_10018572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3717
C687J35021_10025933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2969
C687J35021_10027962	Not Available	2821
C687J35021_10069142	All Organisms → Viruses → Predicted Viral	1527
C687J35021_10072463	Not Available	1479
C687J35021_10075391	Not Available	1439
C687J35021_10086545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1311
C687J35021_10105961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_7	1145
C687J35021_10107432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1135
C687J35021_10111312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1109
C687J35021_10125635	Not Available	1025
C687J35021_10138783	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	962
C687J35021_10186823	Not Available	800
C687J35021_10214416	Not Available	735
C687J35021_10215389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas suwonensis	733
C687J35021_10230642	All Organisms → cellular organisms → Bacteria	703
C687J35021_10273666	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	635
C687J35021_10289810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	614
C687J35021_10293039	Not Available	610
C687J35021_10316433	Not Available	583
C687J35021_10325691	Not Available	573
C687J35021_10352208	Not Available	547
C687J35021_10375801	Not Available	526
C687J35021_10383546	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J35021_10000503	C687J35021_1000050349	F097229	VKVCSRQCPTCIYRPDSLFDLKKLEAQIADPYMAGFFKGHRVCHHTKDACCRGFWNKHKDSFALGQVAQRMNVVIFVAPGG*
C687J35021_10000750	C687J35021_1000075021	F030996	MSSLNTLTGRNGKFVVEETLVARTKKWDVSRSLASKSEWGDSDSAGYTNRAPGRRDATFNSEGVYDTTAEVWDIFVPEDISEVVLWMNATALYWAFPRALCHDFKISVNIDTEEVIGHTSDWGADGIFYGPGDAGAPSHTLP*
C687J35021_10002463	C687J35021_1000246322	F037704	MSSVRERVKAAQKELRDGGDLLPTRAAQLLMELTALLGNCLEEIREADHAYAVVLLGALETSEKANRAKIWAETSVEYQRKREARDTRELVQELVASLKYXLRSLEAEMRLSH*
C687J35021_10002920	C687J35021_100029209	F050468	MDALSSGGLHQTGKDAVGFQSAFRSGFEAYLAEDHQMPERLFRMIVCGRHAGTPEEGKEKFLLWSREIGPKGLCGFKTKRLFADVAEFRDESFFDLGCCLPRNSAGFQLLPHVAES*
C687J35021_10008201	C687J35021_100082015	F016408	MAVTESQVAGLELERVLPKVAMAFERDDKFYATIKKRPAEVISNRQMRVPIELRPGGSFGYYNPDGGDLGRGGGPTWDKAVLNSVFMVEALEYTKLTEWSTDNSRKAVEQSVRRMTATALDEIRRQIDSQLMQAGSGAIGTITSVATAGGVDTYTCTTDGFGVRLMRFGQTVQVFDITLATLRGSGTITELDVANKTVDVTPAIAGAVATDIXVTNGISAPASLPALYGIPYHHSNASTGTWLGFARSTTPEIRSNRVNGGSAALSLPSPRLAINLMGNRIGIDNNFNPNAWCHPCQKQAYEELGQLVTIIQKQAKEESLNMYFDNMQMAGAMVRTSYNWDQTRIDFVTDSLWGRAEILPIGFYRSDGRHIFPIRGASGGIAAADIFYMTVGMQTFVTAPAGTAYIDNLQVPSGY*
C687J35021_10011987	C687J35021_100119879	F037704	MTVRDHIESIRREVRDTDLLPDRAAELLNQLSALLGNVLDEIRDADMDYAVVLLKHLDSEEAANRAKIRAQTTPEYLRSREARDTKEIVVELARSLKYFLKVKEEEMRLSRYQRA*
C687J35021_10018572	C687J35021_100185722	F075390	MMKPLRYLWAITLCAFRNEVGAVGTWKIYAKTKKYLANGTVTLGAGVFKMSLHKTSASAAIIVLSTRSTFASIGSEISARGGYVAGGRNLGPVTGQWTVGASAKQYKFTYTTAGLVFTASGSSLINIRFALIRNSTGAGAGKVLCFASLSSAQFTIASPNTLSILPAATGVFTLA*
C687J35021_10020835	C687J35021_100208352	F033383	MRLRHWLRKENSGLFQTTLELAHYEERQGHTITLVNPSDEQVFYSNVDDPEIEIVHSQMGLSAYGDHHIPRFMWMHGEPLSSVGNGVSMKAIVDLAPMMDAFICMRQEERAVWNTIKRTYYVPKGIDLERFYPLSDPPEKLSGEPAVLYYENWRGSRNPLYLCIAMQQVWQKYPKARLHLYNCNNQKMYETFHALIKHNKWWPFVRTLTGPVQDVNLLLNKADIVVSCLYPLYARSIEAFGAGKALLAPGYRDCRYPFKCDLDPDSLARAIIQCHENYDQIDYRAWAEQNHDVAETVRQSIEIYERYL*
C687J35021_10025933	C687J35021_100259333	F075390	MSLHKTSASANIIVLSTRSTFASIGSEISARGGYVAGGRNIGPATGQWTVGASAKQYKFTYTTAGLVFTASGSSLINIRFALIRNSTGAGAGKVLCFASLSSAQFTIASPNTLSILPAATGCFTLA*
C687J35021_10027962	C687J35021_100279622	F030363	MVDFDFWACQRPLTHKWGSGQVWSRIVARFGAPDVAFGKTDGIPDGIAAVDTNTGFEWSHLPFEDNHFVFGYWDPPYDRLYKREGMEIWRTLRRIAILHTHIWPRAWLANAEREAMVAITMGPMKQIRCLQVFRKKIA*
C687J35021_10069142	C687J35021_100691422	F016408	VAVNEAQVAGLELERVITKLRVLFERDDKFYSSIEKRNVEKISNRQMRIPLELRPGGAFQYFNADGGDLGRGGGPTFDKATLTAVFASENIEYTKLAQWSTDDARKSIINSVRRLTATAFDELRRQLDSQMQGSGNGVIGTVTTDTPAGGENVIDLTTDGFGANLMRYGQTVQIFDTTLATNRGKGSISFWDKENKVIHISPQVAGVVXGDKIVVDGISDPTALPGFFGVPYHHSNASTGTWLGFSRATTPEVRASRVNGNSSXLTLPLPRIAINKIGNRVGEDENFKPEAWLHPAQAQAYEDIGQQVTIIQKMAKDEGLNMYFGDNMQLAGAPVKRHYQWD
C687J35021_10072463	C687J35021_100724633	F024972	MKITKVTKTYFETEGERVYFFEPLDEEMTVSELQELMNENEKFLLGEIQKMKKEQITEGSVIDKKGE*
C687J35021_10075391	C687J35021_100753913	F033485	MMEIIIKGKHDHFGKTRSEQEKNMRKEWGCTMTDEQLDKLKFLEKKVKDKSGSKKNFITGIDIDK*
C687J35021_10086545	C687J35021_100865453	F073120	MELSVTEYSKRLGVTRSAVLLQIKEKRLPKNVTVKKIGNTYSLSVRGQKK*
C687J35021_10105961	C687J35021_101059614	F037704	TGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR*
C687J35021_10107432	C687J35021_101074322	F040284	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGVNAPRKRLNLHRNGGEYPYDTVLNVYAGGSA
C687J35021_10111312	C687J35021_101113122	F037704	MVKAIQVEVRDADLLPTRAAELLMKTTALLGNCQTEIRQADYDYAVVLLACLGGDEAANRARIRAEISPEFRRKREARDTRELCVELSRSLKYFLKAAAEEMRLSGPQP*
C687J35021_10125635	C687J35021_101256352	F061881	MSLSRDSRQERKLKALRRAQFRLTQRFEYIDWEEDVLIPEVEALKAGRPVFGLTDGRMFEIEIEESHADPDQTPPDHTEPDPGTR*
C687J35021_10138783	C687J35021_101387832	F087386	MTKQELFKKYSIDESHNVWDNSIDNWMSVEVYRIMHNGELPPPDDKSVNWITEFLDKQEDMKWWVANVMSRKDWGSLYLTAKRMVYSLSEQILSLNN*
C687J35021_10186823	C687J35021_101868231	F077980	PAVSSGQRNGGGTMKRPSYEIDETTFPAEAYTVKGSRGVAWRVYGWETEPTEDTEWDGIEARTGKVVCVMVGDDQRFAFDPEELTPLDDLAYCAECGQVGCQHDGRER*
C687J35021_10214416	C687J35021_102144161	F066733	VKTVGQGMDRARFFTATLPAPASQTAGTTATEATSNISAIEIVPSQITGAYIIADYDLIENSPYDFLKTIVETSAARYDDFVATDMLDTVSAEGTLTPGLWVNAETGATITDSDLASSQFDETGIAFGRQYLENQGYLRGGVKPVCVMHPKQWRELITSTNVTSLATQSVPDIWLKGHLEELMGVQIVVSNAVQAINNQTYDAYNALMFVPRHSYGIAIKRDVTVKFHDIGEDNTVRVNTTWRTK
C687J35021_10215389	C687J35021_102153891	F066733	TVGQGMDRARFFTATLPAPASQTAGTTATEATSNISAIEIVPSQITGAYIIADYDLIENSPYDFLQTVVETSAARYDDFVATDMLDTVSKEGTLTPGLWIDAETGATITSSDLASTQFDETGIAFGREYLENQGYLRGGVKPVCVLHPKQWRQLITSTNVTSLATQTTPDIWLKAQLEELMGVQIVVSNAVEAINNQTYDAYNALMFIPRHSYGIAIKRDVTVKFHDIGEDNTVRVNTTWRTK
C687J35021_10230642	C687J35021_102306421	F082441	MSVDQGVAQAGEVTIGPDLKIPPHYRPGKSCSPGRGYNASAEAPNYPSTYPKMNLRVFNGEVIGFLFELDAKEXWKPWYDQPEGKPTTHEGGEPHYTQTIYIKKGPTAEECKVSKSPYGQ
C687J35021_10273666	C687J35021_102736661	F015326	MCLSFFQGNMECCEPCCGKPCNTNDGIYCCLSFFPGCFCVGPKVYAASQDQACAFVNHCIPFLALLVAIVPIVGGILAFILWCFIRTGIRFNLRKKHGIGDTSKWHMCDCCGIWFIIPAPCFSCQELRSCQKEHWDWYAAFNDKKFPAETQIDPCYMFCVE*
C687J35021_10289810	C687J35021_102898101	F035129	IAIEFQEHGKFTGIIGKAYVTEKAVEVVTFAEQNGVVIPFAFIDTILEKESKTEGVYNVKCRNQLGVLSTGTIDLHDRLNPKIILTTDKGITVTNISNVGRKMKKEFMPKVDLGK*
C687J35021_10293039	C687J35021_102930392	F024972	MKITKVTKQYFETEGERIYFFEPLDEELTVSELQELMDENEKFLLGDILRMKKEKK*
C687J35021_10316433	C687J35021_103164332	F075437	LSEKSTFHETKEVVTRLREPLKIKAIPYATTKLRGHQIQLELNLDWTQIDQLTGKDSYIIKLIENVKELIIGPMESKYLGVIMPEEFNQKASSV*
C687J35021_10325691	C687J35021_103256913	F060593	MIYPRLPDDQYKKYLFQARSQIGAILNIFRCYGLEPFVDGAIEECMKITENFAMV
C687J35021_10352208	C687J35021_103522081	F061881	MSLSRDSRQERKLKAIRMAQFRLKQRLEAIDFLEDVLMPEIEALKAGKSVLGLPENVAFDIQVITDADPRYPATGESD*
C687J35021_10375801	C687J35021_103758011	F046735	RKEIVRVILNVFERLLLRNIVPQIQGWNYAYLKEARELIEGLFIEQEEAELHFEQEGIQVKWQLQREDGTPIPQERDIPVSDGLKAKIGKYLKQLDKEEKLEFAHMTLYGKFLGL*
C687J35021_10383546	C687J35021_103835461	F059829	SPALTPPTGLIAANNASVLYRVLRHSYFSCILGNEAPTVGLTTNRMMGFISENFLPHQIVDTTQPEINWPGLKFDKATIVMSQYMPSQDGVNDADLGDYSAAGETFAWLNFGPQGDDAYIRLYIAQSSKFAMGFTGFKGAREDNQVSGQILFGGNLTVKALRLSRILHGFTA*