3300005096: Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7

Overview

Basic Information

• IMG/M Taxon OID: 3300005096
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114640 | Gp0114744 | Ga0072503
• Sample Name: Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 592184781
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Chimney In Epr
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Chimney In Epr

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent chimney → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: East Pacific Rise
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041287	Metagenome / Metatranscriptome	160	Y
F048675	Metagenome	148	Y
F063710	Metagenome	129	Y
F074900	Metagenome	119	Y
F091343	Metagenome / Metatranscriptome	107	Y
F097229	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0072503_129132	All Organisms → cellular organisms → Bacteria → Proteobacteria	27624
Ga0072503_133386	Not Available	3715
Ga0072503_142125	All Organisms → cellular organisms → Bacteria	3158
Ga0072503_156927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4553
Ga0072503_157593	All Organisms → cellular organisms → Bacteria	2538
Ga0072503_161052	All Organisms → cellular organisms → Bacteria	5478

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0072503_129132	Ga0072503_12913216	F074900	MTAKIINLADPDEREHAFATVEEAERALAAMVEKFKTQGYRVEEQRPPNEKYPQFAVYDFGDAWIGTYTIEL*
Ga0072503_133386	Ga0072503_1333862	F041287	METCFKCGGNADFICPDCGTKMCWSYSERRYRGADRGFKSRFMCPKCWKTKRKVLNENMVNAKTYKPKKTYIFSK*
Ga0072503_142125	Ga0072503_1421252	F091343	MWRETRVSRNRKSVMADIVENYQHAALWLIGPDMPGLLRMGATYVLDRGGNIDKDIADKFGEKAVVFLSITAEPDGIRRMDRDKDQLRRDSGCGVVFQPMNSPTVPDEFQQELHGFDIVTDDRPGMIADLTELLEKFSILIVGHAGERYIAPLPEPHARGGQKCVVLLPKEFDLPGFTRELDALVWKYNGMIKTPLRKVPGLLWWW*
Ga0072503_156927	Ga0072503_1569276	F063710	MNKSRQRSLRIRVEHEPNRFSDDCLERIYEELHPTKSRKVTPDKSNKQGEVELQKGKRGPQ*
Ga0072503_157593	Ga0072503_1575932	F048675	MDKHLEKDEVLFCEHYAAAQSLKNAWTRLASTYGCMMVVLSGKTLIIKPHWFAGWLIYLLGLDLCHEIPVTNIRKVTETGVWSKYGKVELHFRSAEGQDKRVLLYLTKSREFVDRLADAIRKT*
Ga0072503_161052	Ga0072503_1610522	F097229	MFRVQKKMCSTCIYRPDSTLDLDSLEDAVRDPHVGFKAHRICHHSADVCCRGFWEAHKGEFPAGQMAQRLGVVDFVDVDNLIEVTK*