3300002529: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.2

Overview

Basic Information

• IMG/M Taxon OID: 3300002529
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056899 | Ga0005057
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 940025225
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017881	Metagenome / Metatranscriptome	238	Y
F035129	Metagenome / Metatranscriptome	173	Y
F047211	Metagenome	150	Y
F065251	Metagenome / Metatranscriptome	128	Y
F082441	Metagenome	113	Y
F096818	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J35504_10088301	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13	1398
C687J35504_10093091	All Organisms → cellular organisms → Archaea	1350
C687J35504_10158984	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	949
C687J35504_10190330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	845
C687J35504_10245990	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaB.Bin001	717
C687J35504_10272383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	673

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J35504_10088301	C687J35504_100883011	F096818	AGRAAANRTIYPRGWPTFGATEARTWGPSRSIYWAKILFEKWWLWRYF*
C687J35504_10093091	C687J35504_100930911	F065251	MYLRHFIKGNKKYYYIAKAVRKGVRVIQKSVLYIGTADTLYGKLVSLKKK*
C687J35504_10158984	C687J35504_101589842	F047211	LDHAYEGMRARATVDLIPPEAAVENLVKMVTYVDKRAATIDRSKLADYSILKELAQSKQIPAKK*
C687J35504_10190330	C687J35504_101903302	F082441	KEEEKHHEKGNIHRRAFFFLAMSVDQGVAQAGEVTIGPDLKIPPHYRPGKSCSPGRGYNASAEAPNYPSTYPKMNLRVFNGEVIGFLFELDAKEGWKPWYDQPEGKPTTHEGGEPHYTQTIYIKKGPTAEECKVSKSPYGQ*
C687J35504_10245990	C687J35504_102459902	F035129	MKKILFCFLICVIPSTVFAASFPQSIAFEFQEHGKFTGIIGKAYITETAVEIVTFAEKSGEVVPFAFICTILEKRSQIEGLYNIKCRNQIGVVSTGTIDIRDPLKPKMTLTSDKGITITNISDGGRKMKKEFLPKLDLGK*
C687J35504_10272383	C687J35504_102723831	F017881	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGVNAPRKRLNLHRNGGEYPYDTVLNVYAGGSASYGAIGAQVALHRKAIQGTVQKRPPFNPDQTELALIYDVDSGSLLGVMAHRPRHVQGVADLRTPATSLAGLDLFARADAKKVGIY