Metagenome / Metatranscriptome Family F096514

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096514
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	56 residues
Representative Sequence	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRATMPDSSELTPAL
Number of Associated Samples	66
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.44 %
% of genes near scaffold ends (potentially truncated)	23.08 %
% of genes from short scaffolds (< 2000 bps)	62.50 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (64.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (84.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.59% β-sheet: 0.00% Coil/Unstructured: 49.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13302	Acetyltransf_3	26.92
PF02033	RBFA	10.58
PF11987	IF-2	5.77
PF03447	NAD_binding_3	4.81
PF04296	YlxR	1.92
PF00226	DnaJ	1.92
PF12244	DUF3606	0.96
PF02685	Glucokinase	0.96
PF01370	Epimerase	0.96
PF13505	OMP_b-brl	0.96
PF01053	Cys_Met_Meta_PP	0.96
PF03951	Gln-synt_N	0.96
PF01361	Tautomerase	0.96
PF01556	DnaJ_C	0.96
PF03544	TonB_C	0.96
PF08885	GSCFA	0.96
PF04024	PspC	0.96
PF00583	Acetyltransf_1	0.96
PF00293	NUDIX	0.96
PF00149	Metallophos	0.96
PF03320	FBPase_glpX	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0858	Ribosome-binding factor RbfA	Translation, ribosomal structure and biogenesis [J]	10.58
COG2740	Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family	General function prediction only [R]	1.92
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	0.96
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.96
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.96
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.96
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.96
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.96
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.96
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.96
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.96
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.96
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.96
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0174	Glutamine synthetase	Amino acid transport and metabolism [E]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.58 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	81.73 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	76.92 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	69.23 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	40.38 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Sphingomonas crusticola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	19.23 %
Unclassified	root	N/A	7.69 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	1.92 %
Sphingomonas phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	0.96 %

Name	Rank	Taxonomy	Distribution
Sphingomonas crusticola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	19.23 %
Unclassified	root	N/A	7.69 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	0.96 %
Sphingomonas sp. MM-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. MM-1	0.96 %
Sphingomonas phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001989\|JGI24739J22299_10026222	Not Available	2046	Open in IMG/M
3300001990\|JGI24737J22298_10099418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	862	Open in IMG/M
3300002067\|JGI24735J21928_10013165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2604	Open in IMG/M
3300002067\|JGI24735J21928_10027146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1717	Open in IMG/M
3300002067\|JGI24735J21928_10093921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	860	Open in IMG/M
3300002075\|JGI24738J21930_10056094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	806	Open in IMG/M
3300002244\|JGI24742J22300_10015435	Not Available	1285	Open in IMG/M
3300002741\|JGI25157J39369_1024897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	700	Open in IMG/M
3300002854\|pct2_10028241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	2322	Open in IMG/M
3300003320\|rootH2_10053648	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300003320\|rootH2_10053649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1074	Open in IMG/M
3300003322\|rootL2_10126934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1545	Open in IMG/M
3300003322\|rootL2_10197439	All Organisms → cellular organisms → Bacteria	2427	Open in IMG/M
3300003323\|rootH1_10055092	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300003323\|rootH1_10071196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1274	Open in IMG/M
3300003762\|Ga0055542_1004662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3259	Open in IMG/M
3300005327\|Ga0070658_10001905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	17618	Open in IMG/M
3300005327\|Ga0070658_10005978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	9865	Open in IMG/M
3300005327\|Ga0070658_10128747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2108	Open in IMG/M
3300005327\|Ga0070658_10182984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1764	Open in IMG/M
3300005327\|Ga0070658_10904167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	767	Open in IMG/M
3300005327\|Ga0070658_11268499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	640	Open in IMG/M
3300005328\|Ga0070676_10001124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	13361	Open in IMG/M
3300005328\|Ga0070676_10100588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1785	Open in IMG/M
3300005339\|Ga0070660_100001407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	16401	Open in IMG/M
3300005339\|Ga0070660_100155964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1837	Open in IMG/M
3300005339\|Ga0070660_100359438	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200	Open in IMG/M
3300005344\|Ga0070661_100860320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	747	Open in IMG/M
3300005366\|Ga0070659_100699075	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005366\|Ga0070659_102113084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	506	Open in IMG/M
3300005435\|Ga0070714_102411039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	511	Open in IMG/M
3300005455\|Ga0070663_100312672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1261	Open in IMG/M
3300005457\|Ga0070662_100005595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. MM-1	8031	Open in IMG/M
3300005457\|Ga0070662_100052436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	2948	Open in IMG/M
3300005457\|Ga0070662_100056185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2857	Open in IMG/M
3300005519\|Ga0077119_10000640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	42992	Open in IMG/M
3300005539\|Ga0068853_100037722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4113	Open in IMG/M
3300005548\|Ga0070665_100552358	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300005548\|Ga0070665_100795279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	959	Open in IMG/M
3300005563\|Ga0068855_100001302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	30919	Open in IMG/M
3300005563\|Ga0068855_102220722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	551	Open in IMG/M
3300005577\|Ga0068857_100078948	All Organisms → cellular organisms → Bacteria → Proteobacteria	2938	Open in IMG/M
3300005614\|Ga0068856_100006062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	11881	Open in IMG/M
3300005614\|Ga0068856_100266671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1728	Open in IMG/M
3300005614\|Ga0068856_100392013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1408	Open in IMG/M
3300005614\|Ga0068856_102636417	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005616\|Ga0068852_101673912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	659	Open in IMG/M
3300005719\|Ga0068861_101683921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	627	Open in IMG/M
3300005834\|Ga0068851_10166175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1215	Open in IMG/M
3300009093\|Ga0105240_10214756	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300009093\|Ga0105240_10928069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	935	Open in IMG/M
3300009545\|Ga0105237_10302021	Not Available	1604	Open in IMG/M
3300009551\|Ga0105238_11451349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	714	Open in IMG/M
3300009551\|Ga0105238_11925276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300009553\|Ga0105249_12865456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	553	Open in IMG/M
3300010218\|Ga0136212_1000049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	64966	Open in IMG/M
3300010375\|Ga0105239_10461518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1442	Open in IMG/M
3300012212\|Ga0150985_111988441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	558	Open in IMG/M
3300012212\|Ga0150985_118347770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	612	Open in IMG/M
3300012469\|Ga0150984_103691274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300012942\|Ga0164242_10036090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4836	Open in IMG/M
3300012943\|Ga0164241_10123980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1853	Open in IMG/M
3300013104\|Ga0157370_10000749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	40556	Open in IMG/M
3300013104\|Ga0157370_10179510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1967	Open in IMG/M
3300013105\|Ga0157369_11687742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	644	Open in IMG/M
3300013307\|Ga0157372_11190169	Not Available	881	Open in IMG/M
3300017792\|Ga0163161_10237900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	1415	Open in IMG/M
3300020060\|Ga0193717_1032932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	2000	Open in IMG/M
3300022908\|Ga0247779_1041133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1225	Open in IMG/M
3300025231\|Ga0207427_101572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	7881	Open in IMG/M
3300025254\|Ga0209148_1000285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	75960	Open in IMG/M
3300025254\|Ga0209148_1001547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	11147	Open in IMG/M
3300025321\|Ga0207656_10160173	Not Available	1070	Open in IMG/M
3300025899\|Ga0207642_10005977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4015	Open in IMG/M
3300025901\|Ga0207688_10093770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1727	Open in IMG/M
3300025904\|Ga0207647_10000729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	25809	Open in IMG/M
3300025904\|Ga0207647_10000787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	24612	Open in IMG/M
3300025904\|Ga0207647_10056683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2403	Open in IMG/M
3300025904\|Ga0207647_10151145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	1357	Open in IMG/M
3300025904\|Ga0207647_10492151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	684	Open in IMG/M
3300025909\|Ga0207705_10000066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	136520	Open in IMG/M
3300025909\|Ga0207705_10001370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	19451	Open in IMG/M
3300025909\|Ga0207705_10002477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	14226	Open in IMG/M
3300025909\|Ga0207705_10053994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2896	Open in IMG/M
3300025909\|Ga0207705_10442682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1007	Open in IMG/M
3300025909\|Ga0207705_11283401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	560	Open in IMG/M
3300025913\|Ga0207695_10013029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	9933	Open in IMG/M
3300025914\|Ga0207671_10444557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	1032	Open in IMG/M
3300025919\|Ga0207657_10003774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	16103	Open in IMG/M
3300025919\|Ga0207657_10517494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	934	Open in IMG/M
3300025932\|Ga0207690_10140519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1779	Open in IMG/M
3300025932\|Ga0207690_11843198	Not Available	505	Open in IMG/M
3300025933\|Ga0207706_10070808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3067	Open in IMG/M
3300025945\|Ga0207679_11878579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	546	Open in IMG/M
3300026041\|Ga0207639_11051654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	763	Open in IMG/M
3300026078\|Ga0207702_10265339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1618	Open in IMG/M
3300026078\|Ga0207702_10497359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1188	Open in IMG/M
3300026116\|Ga0207674_10819331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	898	Open in IMG/M
3300031003\|Ga0074003_13200345	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300031716\|Ga0310813_11380778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas crusticola	653	Open in IMG/M
3300031996\|Ga0308176_11442999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	732	Open in IMG/M
3300032896\|Ga0335075_10951460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	88.46%
Environmental	Environmental	9.62%
Engineered	Engineered	1.92%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	88.46%
Terrestrial	Environmental → Terrestrial	9.62%
Lab Enrichment	Engineered → Lab Enrichment	1.92%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	32.69%
Soil	Environmental → Terrestrial → Soil	8.65%
Rhizome	Host-Associated → Plants → Rhizome	5.77%
Roots	Host-Associated → Plants → Roots	4.81%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.96%
Unclassified	Engineered → Lab Enrichment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	32.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	30.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	5.77%
Endophytes	Host-Associated → Plants → Roots → Endophytes	2.88%
Loam	Environmental → Terrestrial → Soil → Loam	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Aerobic Media	Engineered → Lab Enrichment → Defined Media → Aerobic Media	0.96%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	32.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	30.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	5.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified	0.96%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	26.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	25.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.69%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	5.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%
Lignocellulose-Degrading Enriched	Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Lignocellulose-Degrading Enriched	0.96%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300002741	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL	Host-Associated	Open in IMG/M
3300002854	Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass	Engineered	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003762	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010218	Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil ? week1, replicate 1	Engineered	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012942	Miracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300025231	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025254	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031003	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24739J22299_100262221	3300001989	Corn Rhizosphere	RRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAACELTPAL*
JGI24737J22298_100994181	3300001990	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAAGELTPA
JGI24735J21928_100131654	3300002067	Corn Rhizosphere	MDLIDLYHRRGISLVRXKLRASGAARRGYARLARRYAELIERERTEAPLSEPVEFTPAL*
JGI24735J21928_100271462	3300002067	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARMYSEQIERQRATMPAVREFTPAV*
JGI24735J21928_100939212	3300002067	Corn Rhizosphere	IDLYHRRGISLVRSKLRASAAARRGYGRLARRYSELIERERTAIPISRESVELTPAL*
JGI24738J21930_100560941	3300002075	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAMMPDSTELTP
JGI24742J22300_100154351	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	RGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAMTPESAELTPAL*
JGI25157J39369_10248971	3300002741	Arabidopsis Root	MDLIDLYHRRGIALVRSKLRTSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAL*
pct2_100282411	3300002854	Lignocellulose-Degrading Enriched	MDLVDLYHRRGIALVRSKLRGSAAARRGYGRLARLYSEQIERQRGAPTVVPELTPAL*
rootH2_100536481	3300003320	Sugarcane Root And Bulk Soil	MDLIDLYHRRGIALVRSKLRGSAAARRGYSRLVRVYSEQIERRRVGISDAAAELTPAL*
rootH2_100536492	3300003320	Sugarcane Root And Bulk Soil	MDLIDLYHRRGISLVRSRLRTSAAARRGYGRLARRYADLIERERAVSPTSREPAELTPAL
rootL2_101269341	3300003322	Sugarcane Root And Bulk Soil	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLARRYADLIERERAVSPTSREPAELTPAL
rootL2_101974393	3300003322	Sugarcane Root And Bulk Soil	MDLIDLYHRRGISLVRSKLRPSAAARRGYGRLAKRYADEIERERAVIPARDPAELTPAL*
rootH1_100550922	3300003323	Sugarcane Root And Bulk Soil	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLARRYADLIERERAVHPAPHEPAELTPAL
rootH1_100711961	3300003323	Sugarcane Root And Bulk Soil	MDLIDLYHRRGISLVRSKLRASAAARNGYGRLARRYADLIERERAVHPAPHEPAELTPAL
Ga0055542_10046624	3300003762	Arabidopsis Root	MDLIDLYHRRGIALVRSKLRGSAAARQGYGRLARMYSEQIERRRAMAPDSVDLTPAL*
Ga0070658_100019054	3300005327	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAVMPDAGPELTPAL*
Ga0070658_100059787	3300005327	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARMYSEQIERQRATMPAAREFTPAV*
Ga0070658_101287472	3300005327	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAMMPDSTELTPAL*
Ga0070658_101829841	3300005327	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGTAAARRGYSQLARIYSEQIERRRALMPDAHEFTPAL*
Ga0070658_109041672	3300005327	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERQRAVMPDAPELTPAL*
Ga0070658_112684991	3300005327	Corn Rhizosphere	MDLIDLYHRRGISLVRSRLRASSAARRGYARLARRYAELIERQRPEAPLSEPVEFTPAL*
Ga0070676_1000112415	3300005328	Miscanthus Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAVMSESAELTPAL*
Ga0070676_101005883	3300005328	Miscanthus Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAMTPESAELTPAL*
Ga0070660_10000140715	3300005339	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARMYSEQIERRRAVMSESAEPTPAL*
Ga0070660_1001559641	3300005339	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARMYSEQIERQRATMPAAREF
Ga0070660_1003594382	3300005339	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRFADQIERERAIIPRRDPVDLTPAL*
Ga0070661_1008603202	3300005344	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAVMPDAEPELTPAL*
Ga0070659_1006990752	3300005366	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAVMSESAELTPAL*
Ga0070659_1021130841	3300005366	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASGAARRGYARLARRYAELIERERTEAPLSEPVEFTPAL*
Ga0070714_1024110391	3300005435	Agricultural Soil	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARMYSEQIERRRAVMSEAAEPTPAL*
Ga0070663_1003126721	3300005455	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAP
Ga0070662_1000055951	3300005457	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAAGELTPAL*
Ga0070662_1000524365	3300005457	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERTAPAACELTPAL*
Ga0070662_1000561854	3300005457	Corn Rhizosphere	MDLIDLYHRRGISLVRCKLRASGAARRGYARLARRYAELIERERTEAPLSEPVEFTPAL*
Ga0077119_1000064029	3300005519	Arabidopsis Root	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARIYSEQIERQRAMVVVKAPELKSAL*
Ga0068853_1000377226	3300005539	Corn Rhizosphere	DLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRATMPDSSELTPAL*
Ga0070665_1005523581	3300005548	Switchgrass Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAVMSESAELT
Ga0070665_1007952792	3300005548	Switchgrass Rhizosphere	MDLIDLYHRRGIALVRSKLRGTAAARRGYGRLARIYSEQIERRRALMPEAREFTPAL*
Ga0068855_10000130215	3300005563	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRATMPDSSELTPAL*
Ga0068855_1022207222	3300005563	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGTAAARRGYGRLARIYSEQIERHRALMPEAPEFTPAL*
Ga0068857_1000789482	3300005577	Corn Rhizosphere	MDLIDLYHRRGISLVRSRLRTSAAARRGYGRLARRYADLIERERAVNPTSRQPAELTPAL
Ga0068856_1000060624	3300005614	Corn Rhizosphere	MDLIDLYHRRGIAVVRSKLRSSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAL*
Ga0068856_1002666711	3300005614	Corn Rhizosphere	MDLIDLYHRRGISLVRSRLRTSAAARRGYGRLARRYADLIERERAV
Ga0068856_1003920131	3300005614	Corn Rhizosphere	HRRGISLVRSRLRTSAAARRGYGRLARRYADLIERERAVSPTSREPAELTPAL*
Ga0068856_1026364171	3300005614	Corn Rhizosphere	RGISLVRSKLRTSAAARRGYGRLARRYSELIERERAVSPLSREPAELTPAL*
Ga0068852_1016739121	3300005616	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATAAARQGYGRLARIYSEQIERQRATLPVAREFTPAA*
Ga0068861_1016839212	3300005719	Switchgrass Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRATM
Ga0068851_101661752	3300005834	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASGAARRGYARLARRYAELIERERTEPPLSEPVEFTPAL*
Ga0105240_102147564	3300009093	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARLYSEQIERQRALLPNSPGFRPAL*
Ga0105240_109280692	3300009093	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRTSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAV*
Ga0105237_103020214	3300009545	Corn Rhizosphere	ALVRSKLRGSPAARRGYGQLARMYSEQIERRRAVMSESAEPTPAL*
Ga0105238_114513491	3300009551	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAMM
Ga0105238_119252762	3300009551	Corn Rhizosphere	SKLRGSAAARRGYGRLARIYSEQIERRRATMPDSSELTPAL*
Ga0105249_128654561	3300009553	Switchgrass Rhizosphere	MDLIDLYHRRGISLVRSKLRTSAAARLGYGRLAKYYADQIESQRVAATPVAPSAGGLTPAL*
Ga0136212_100004921	3300010218	Soil	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARLYSEQIERQRALLPDAPELTPAL*
Ga0105239_104615183	3300010375	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAACELTPAL*
Ga0150985_1119884411	3300012212	Avena Fatua Rhizosphere	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARLYSEQIERRRAGMSESAELTPAL*
Ga0150985_1183477701	3300012212	Avena Fatua Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYSRLARRYSDLIERERATGPIARESVELTPAL
Ga0150984_1036912741	3300012469	Avena Fatua Rhizosphere	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARLYSEQIERRRAGMSES
Ga0164242_100360907	3300012942	Compost	MDLIDLYHRRGIALVRSKLRATAAARRGYGRLARRYSEQIDRYRPALAESVEFKPAL*
Ga0164241_101239803	3300012943	Soil	MDLIDLYHRRGIALVRSQLRATAAARRGYGRLARVYSEQIERRRALMPDAPELTPAL*
Ga0157370_100007497	3300013104	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRSSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAL*
Ga0157370_101795102	3300013104	Corn Rhizosphere	MDLIDLYHRRGIALVRSTLRGSPAARRGYGQLARMYSEQIERRRAVMSEAAEPTPAL*
Ga0157369_116877421	3300013105	Corn Rhizosphere	QETVMDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAAGELTPAL
Ga0157372_111901691	3300013307	Corn Rhizosphere	ALVRSKLRGSAAARRGYGRLARIYSEQIERRRAMTPESAELTPAL*
Ga0163161_102379002	3300017792	Switchgrass Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAITPESAELTPAL
Ga0193717_10329325	3300020060	Soil	MDLIDLYHRRGISLVRSKLRASAAARRGYCRLAKYYADQIESQRVDAEPVAPPSGLTPAL
Ga0247779_10411332	3300022908	Plant Litter	MDLIDLYHRRGISLVRSKLRTSAAARRGYSRLAKYYADQIESQRVDAAPVVPPAGLTPAL
Ga0207427_1015726	3300025231	Arabidopsis Rhizosphere	MDLIDLYHRRGIALVRSKLRTSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAL
Ga0209148_100028565	3300025254	Arabidopsis Root	MDLIDLYHRRGIALVRSKLRGSAAARQGYGRLARMYSEQIERRRAMAPDSVDLTPAL
Ga0209148_10015479	3300025254	Arabidopsis Root	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARIYSEQIERQRAMVVVKAPELKSAL
Ga0207656_101601732	3300025321	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASGAARRGYARLARRYAELIERERTEPPLSEPVEFTPAL
Ga0207642_100059774	3300025899	Miscanthus Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAVMSESAELTPAL
Ga0207688_100937702	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAMTPESAELTPAL
Ga0207647_1000072921	3300025904	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASGAARRGYARLARRYAELIERERTEAPLSEPVEFTPAL
Ga0207647_100007873	3300025904	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERTAPAACELTPAL
Ga0207647_100566832	3300025904	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERQRAVMPDAPELTPAL
Ga0207647_101511452	3300025904	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRFADQIERERAIIPRRDPVDLTPAL
Ga0207647_104921511	3300025904	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGKLARLYSDQIERRRAVVSESAELTPAL
Ga0207645_105474522	3300025907	Miscanthus Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQI
Ga0207705_1000006640	3300025909	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRAVMPDAGPELTPAL
Ga0207705_100013706	3300025909	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRTSAAARRGYGRLARHYSELIDRQRAVNPIEREPAELTPAL
Ga0207705_1000247710	3300025909	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLARMYSEQIERQRATMPAAREFTPAV
Ga0207705_100539944	3300025909	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARMYSEQIERRRAMMPDSTELTPAL
Ga0207705_104426822	3300025909	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGTAAARRGYSQLARIYSEQIERRRALMPDAHEFTPAL
Ga0207705_112834011	3300025909	Corn Rhizosphere	VMDLIDLYHRRGISLVRSKLRTSAAARRGYGRLARRYSELIDRQRAVSPIEREPAELTPA
Ga0207695_100130298	3300025913	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRTSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAV
Ga0207671_104445571	3300025914	Corn Rhizosphere	MDLIDLYHRRGISLVRSRLRASAAARRGYGRLARRYADLIERERAVNPTSREPAELTPAL
Ga0207657_100037743	3300025919	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARMYSEQIERRRAVMSESAEPTPAL
Ga0207657_105174943	3300025919	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGTAAARRGYGRLARIYSEQIERRRALMPEAREFTPAL
Ga0207664_105862921	3300025929	Agricultural Soil	MDLIDLYHRRGIALVRSKLRGSPAARRGYGQLARMYSE
Ga0207690_101405193	3300025932	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAAGELTPAL
Ga0207690_118431981	3300025932	Corn Rhizosphere	KLRGSAAARRGYGRLARIYSEQIERQRAVMPDAPELTPAL
Ga0207706_100708084	3300025933	Corn Rhizosphere	MDLIDLYHRRGISLVRCKLRASGAARRGYARLARRYAELIERERTEAPLSEPVEFTPAL
Ga0207679_118785791	3300025945	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARIYSEQIERRRATMPDSSELTPAL
Ga0207639_110516541	3300026041	Corn Rhizosphere	MDLIDLYHRRGIALVRSKLRATPAARRGYGRLAKMYSEQIERQRATMPAAREFTPAV
Ga0207702_102653394	3300026078	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRTSAAARRGYGRLARRYSELIERERAVSPLSREPAELTPAL
Ga0207702_104973592	3300026078	Corn Rhizosphere	MDLIDLYHRRGIAVVRSKLRSSAAARRGYGRLARLYSEQIERQRALLPNSPGFTPAL
Ga0207674_108193312	3300026116	Corn Rhizosphere	MDLIDLYHRRGISLVRSKLRASAAARRGYGRLAKRYADEIERERAAPAACELTPAL
Ga0074003_132003451	3300031003	Soil	MDLIDLYHRRGISLVRSKLARSPAARRGYCKLARRYADQIERQRAERMPEVVELIPAL
Ga0310813_113807782	3300031716	Soil	MDLIDLYHRRGIALVRSQLRATAAARRGYGRLARVYSEQIERRRALMPDAPELTPAL
Ga0308176_114429991	3300031996	Soil	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARVYSEQIERHRALMPEAPEFTPAL
Ga0335075_109514601	3300032896	Soil	MDLIDLYHRRGIALVRSKLRGSAAARRGYGRLARVYSEQIERHRAAMPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096514

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences