3300002854: Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass

Overview

Basic Information

• IMG/M Taxon OID: 3300002854
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085317 | Gp0095702 | Ga0049936
• Sample Name: Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass
• Sequencing Status: Permanent Draft
• Sequencing Center: INDEAR Instituto de Agrobiotecnologia Rosario
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 513342355
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignocellulose-Degrading Enriched Microbial Communities From Concordia, Entre Rios, Argentina
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Lignocellulose-Degrading Enriched → Lignocellulose-Degrading Enriched Microbial Communities From Concordia, Entre Rios, Argentina

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Argentina: Entre Rios
• Coordinates
  • Lat. (^o): -31.372253
  • Long. (^o): -58.116672
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006009	Metagenome / Metatranscriptome	384	Y
F096514	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
pct2_10000111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	201625
pct2_10028241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	2322

Sequences

Scaffold ID	Protein ID	Family	Sequence
pct2_10000111	pct2_10000111122	F006009	MTNAEQKMLKRGVAAGTLMGLALGGIIALFIALRPDFFAALLL*
pct2_10028241	pct2_100282411	F096514	MDLVDLYHRRGIALVRSKLRGSAAARRGYGRLARLYSEQIERQRGAPTVVPELTPAL*