Metagenome Family F093968

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093968
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	39 residues
Representative Sequence	MTHRDGFPRFSARSAWRGDAGHRKARATPSESLGKPP
Number of Associated Samples	43
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.06 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	76.42 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.245 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface (42.453 % of family members)
Environment Ontology (ENVO)	Unclassified (59.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (47.170 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13432	TPR_16	1.89
PF13371	TPR_9	1.89
PF04314	PCuAC	1.89
PF01527	HTH_Tnp_1	1.89
PF00166	Cpn10	0.94
PF13936	HTH_38	0.94
PF03738	GSP_synth	0.94
PF01638	HxlR	0.94
PF13617	Lipoprotein_19	0.94
PF08450	SGL	0.94
PF00043	GST_C	0.94
PF04107	GCS2	0.94
PF02615	Ldh_2	0.94
PF08755	YccV-like	0.94
PF05721	PhyH	0.94
PF04386	SspB	0.94
PF14824	Sirohm_synth_M	0.94
PF13489	Methyltransf_23	0.94
PF00583	Acetyltransf_1	0.94
PF01968	Hydantoinase_A	0.94
PF07311	Dodecin	0.94
PF01207	Dus	0.94
PF12697	Abhydrolase_6	0.94
PF14602	Hexapep_2	0.94
PF03466	LysR_substrate	0.94
PF00581	Rhodanese	0.94
PF01583	APS_kinase	0.94
PF10518	TAT_signal	0.94
PF03725	RNase_PH_C	0.94
PF03328	HpcH_HpaI	0.94
PF06271	RDD	0.94
PF01323	DSBA	0.94
PF00892	EamA	0.94
PF16326	ABC_tran_CTD	0.94
PF02538	Hydantoinase_B	0.94
PF07027	DUF1318	0.94
PF03449	GreA_GreB_N	0.94
PF13091	PLDc_2	0.94
PF00106	adh_short	0.94
PF02581	TMP-TENI	0.94
PF11739	DctA-YdbH	0.94
PF00977	His_biosynth	0.94
PF13023	HD_3	0.94
PF10431	ClpB_D2-small	0.94
PF13844	Glyco_transf_41	0.94
PF06808	DctM	0.94
PF13378	MR_MLE_C	0.94
PF00171	Aldedh	0.94
PF08241	Methyltransf_11	0.94
PF02518	HATPase_c	0.94
PF13469	Sulfotransfer_3	0.94
PF04952	AstE_AspA	0.94
PF13416	SBP_bac_8	0.94
PF00813	FliP	0.94
PF00005	ABC_tran	0.94
PF03444	HrcA_DNA-bdg	0.94
PF00989	PAS	0.94
PF01717	Meth_synt_2	0.94
PF13545	HTH_Crp_2	0.94
PF13759	2OG-FeII_Oxy_5	0.94
PF13439	Glyco_transf_4	0.94
PF02775	TPP_enzyme_C	0.94
PF00775	Dioxygenase_C	0.94
PF14597	Lactamase_B_5	0.94
PF00196	GerE	0.94
PF08238	Sel1	0.94
PF00378	ECH_1	0.94
PF13533	Biotin_lipoyl_2	0.94
PF02108	FliH	0.94
PF10414	CysG_dimeriser	0.94
PF04828	GFA	0.94
PF13641	Glyco_tranf_2_3	0.94
PF02776	TPP_enzyme_N	0.94
PF01497	Peripla_BP_2	0.94
PF03372	Exo_endo_phos	0.94
PF07969	Amidohydro_3	0.94
PF01799	Fer2_2	0.94
PF03476	MOSC_N	0.94
PF13714	PEP_mutase	0.94
PF00805	Pentapeptide	0.94
PF11902	DUF3422	0.94
PF00571	CBS	0.94
PF04055	Radical_SAM	0.94
PF13336	AcetylCoA_hyd_C	0.94
PF08544	GHMP_kinases_C	0.94
PF13085	Fer2_3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.89
COG2847	Copper(I)-binding protein	Inorganic ion transport and metabolism [P]	1.89
COG1317	Flagellar biosynthesis/type III secretory pathway protein FliH	Cell motility [N]	1.89
COG3784	Uncharacterized conserved protein YdbL, DUF1318 family	Function unknown [S]	0.94
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.94
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.94
COG2969	Stringent starvation protein B, binds SsrA peptide	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.94
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.94
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.94
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.94
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.94
COG3785	Heat shock protein HspQ	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.94
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	0.94
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.94
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.94
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.94
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.94
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.94
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	0.94
COG0754	Glutathionylspermidine synthase, CHAP domain	Amino acid transport and metabolism [E]	0.94
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	0.94
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.94
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.19 %
Unclassified	root	N/A	19.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.19 %
Unclassified	root	N/A	19.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.25 %
Unclassified	root	N/A	19.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.09 %
Unclassified	root	N/A	19.81 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.94 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.11 %
Unclassified	root	N/A	19.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.94 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.94 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	31.13 %
Unclassified	root	N/A	19.81 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.94 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	18.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.94 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.94 %
Thalassobaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae	0.94 %
Alphaproteobacteria bacterium MarineAlpha10_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha10_Bin1	0.94 %
Thalassospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae	0.94 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.94 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.81 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	12.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.94 %
Magnetovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio	0.94 %
Oceanibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum	0.94 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.94 %
Alphaproteobacteria bacterium MarineAlpha10_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha10_Bin1	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.81 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	12.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
unclassified Magnetovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio	0.94 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.94 %
Oceanibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum	0.94 %
Alphaproteobacteria bacterium MarineAlpha10_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha10_Bin1	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.81 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	12.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
Magnetovibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio → Magnetovibrio sp.	0.94 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.94 %
Oceanibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum	0.94 %
Alphaproteobacteria bacterium MarineAlpha10_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha10_Bin1	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001459\|MCRcombined_1053992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300001781\|Deep_1000929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	17593	Open in IMG/M
3300003885\|Ga0063294_10424419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	806	Open in IMG/M
3300005590\|Ga0070727_10389679	Not Available	776	Open in IMG/M
3300006002\|Ga0066368_10011291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3145	Open in IMG/M
3300006340\|Ga0068503_10014381	Not Available	1433	Open in IMG/M
3300006420\|Ga0082248_10020960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1165	Open in IMG/M
3300006900\|Ga0066376_10255001	Not Available	1035	Open in IMG/M
3300006900\|Ga0066376_10331461	Not Available	882	Open in IMG/M
3300006900\|Ga0066376_10431801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha10_Bin1	750	Open in IMG/M
3300006900\|Ga0066376_10526229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	665	Open in IMG/M
3300008463\|Ga0115335_104944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2358	Open in IMG/M
3300009030\|Ga0114950_10001446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	17887	Open in IMG/M
3300009030\|Ga0114950_10080189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2591	Open in IMG/M
3300009030\|Ga0114950_10303552	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300009030\|Ga0114950_10678495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	817	Open in IMG/M
3300009030\|Ga0114950_11302089	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300009102\|Ga0114948_10138886	All Organisms → cellular organisms → Bacteria → Proteobacteria	1678	Open in IMG/M
3300009102\|Ga0114948_10143081	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300009102\|Ga0114948_10454802	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300009102\|Ga0114948_10469904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	956	Open in IMG/M
3300009102\|Ga0114948_10475460	Not Available	950	Open in IMG/M
3300009102\|Ga0114948_10566205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	872	Open in IMG/M
3300009102\|Ga0114948_10682331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	795	Open in IMG/M
3300009139\|Ga0114949_10880840	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300009702\|Ga0114931_10001112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34223	Open in IMG/M
3300009702\|Ga0114931_10599081	Not Available	681	Open in IMG/M
3300010430\|Ga0118733_101959877	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300010430\|Ga0118733_103915091	Not Available	801	Open in IMG/M
3300010883\|Ga0133547_10376746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2911	Open in IMG/M
3300010933\|Ga0137936_1023158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	702	Open in IMG/M
3300010933\|Ga0137936_1025584	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300011112\|Ga0114947_10020280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Oceanibaculum	3335	Open in IMG/M
3300011112\|Ga0114947_10130185	Not Available	1579	Open in IMG/M
3300011112\|Ga0114947_10150887	Not Available	1484	Open in IMG/M
3300011112\|Ga0114947_10164829	All Organisms → cellular organisms → Bacteria → Proteobacteria	1428	Open in IMG/M
3300011112\|Ga0114947_10239176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1213	Open in IMG/M
3300011112\|Ga0114947_10279268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetovibrio → unclassified Magnetovibrio → Magnetovibrio sp.	1131	Open in IMG/M
3300011112\|Ga0114947_10570974	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300011112\|Ga0114947_10643556	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300011112\|Ga0114947_10691289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	740	Open in IMG/M
3300011112\|Ga0114947_10901164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300011112\|Ga0114947_11171874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	574	Open in IMG/M
3300011112\|Ga0114947_11209926	Not Available	565	Open in IMG/M
3300011112\|Ga0114947_11447523	Not Available	518	Open in IMG/M
3300011112\|Ga0114947_11507890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	508	Open in IMG/M
3300011112\|Ga0114947_11546770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	502	Open in IMG/M
3300020230\|Ga0212167_1280845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1028	Open in IMG/M
3300020230\|Ga0212167_1281173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1020	Open in IMG/M
3300020231\|Ga0212168_1030323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1028	Open in IMG/M
3300020231\|Ga0212168_1129702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300020231\|Ga0212168_1305574	Not Available	1042	Open in IMG/M
3300020231\|Ga0212168_1382529	All Organisms → cellular organisms → Bacteria → Proteobacteria	1260	Open in IMG/M
3300020231\|Ga0212168_1430731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1668	Open in IMG/M
3300020232\|Ga0212226_105492	All Organisms → cellular organisms → Bacteria → Proteobacteria	1877	Open in IMG/M
3300020232\|Ga0212226_172147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3966	Open in IMG/M
3300020232\|Ga0212226_177581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	6136	Open in IMG/M
3300020234\|Ga0212227_1030109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2510	Open in IMG/M
3300020234\|Ga0212227_1034098	Not Available	1392	Open in IMG/M
3300020234\|Ga0212227_1135363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3880	Open in IMG/M
3300020234\|Ga0212227_1189279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1177	Open in IMG/M
3300020234\|Ga0212227_1260206	Not Available	1093	Open in IMG/M
3300020235\|Ga0212228_1189048	All Organisms → cellular organisms → Bacteria → Proteobacteria	1639	Open in IMG/M
3300020235\|Ga0212228_1413897	All Organisms → cellular organisms → Bacteria → Proteobacteria	1842	Open in IMG/M
3300020364\|Ga0211538_1003026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8692	Open in IMG/M
3300020389\|Ga0211680_10124030	Not Available	1049	Open in IMG/M
3300020423\|Ga0211525_10004218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10724	Open in IMG/M
3300020423\|Ga0211525_10054948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1873	Open in IMG/M
3300022227\|Ga0187827_10065941	All Organisms → cellular organisms → Bacteria → Proteobacteria	2818	Open in IMG/M
3300023442\|Ga0256751_1027979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2046	Open in IMG/M
3300024058\|Ga0209997_10004855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	5215	Open in IMG/M
3300024058\|Ga0209997_10107794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1310	Open in IMG/M
3300024058\|Ga0209997_10256043	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300024058\|Ga0209997_10381011	Not Available	693	Open in IMG/M
3300024060\|Ga0209987_10056916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2209	Open in IMG/M
3300024431\|Ga0209988_10179112	All Organisms → cellular organisms → Bacteria → Proteobacteria	1261	Open in IMG/M
3300024431\|Ga0209988_10197317	Not Available	1189	Open in IMG/M
3300024431\|Ga0209988_10237102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300024431\|Ga0209988_10646771	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300024516\|Ga0209980_10016206	All Organisms → cellular organisms → Bacteria → Proteobacteria	3841	Open in IMG/M
3300024516\|Ga0209980_10089530	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300024516\|Ga0209980_10095938	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300024516\|Ga0209980_10101462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1402	Open in IMG/M
3300024516\|Ga0209980_10103402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1386	Open in IMG/M
3300024516\|Ga0209980_10170865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1019	Open in IMG/M
3300024516\|Ga0209980_10300924	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300024516\|Ga0209980_10338815	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
(restricted) 3300024517\|Ga0255049_10529548	Not Available	548	Open in IMG/M
(restricted) 3300024521\|Ga0255056_10502033	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300026253\|Ga0208879_1022618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3549	Open in IMG/M
3300026253\|Ga0208879_1087939	Not Available	1366	Open in IMG/M
3300026253\|Ga0208879_1155453	All Organisms → cellular organisms → Bacteria → Proteobacteria	922	Open in IMG/M
3300026253\|Ga0208879_1180926	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300027685\|Ga0209554_1241074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	507	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10003397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8722	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10033207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2496	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10250039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
(restricted) 3300027997\|Ga0255057_10036288	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
(restricted) 3300027997\|Ga0255057_10187076	Not Available	1005	Open in IMG/M
3300028600\|Ga0265303_11014688	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	687	Open in IMG/M
3300031623\|Ga0302123_10069696	All Organisms → cellular organisms → Bacteria → Proteobacteria	1905	Open in IMG/M
3300031646\|Ga0302133_10384082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	642	Open in IMG/M
3300031800\|Ga0310122_10021997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3694	Open in IMG/M
3300031804\|Ga0310124_10166246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1362	Open in IMG/M
3300032820\|Ga0310342_100148856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2282	Open in IMG/M
3300032820\|Ga0310342_100479104	Not Available	1382	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.06%
Biotransformation	Engineered → Biotransformation	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.17%
Sediment	Environmental → Aquatic → Sediment	1.89%
Unclassified	Engineered → Biotransformation → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	76.42%
Gulf	Environmental → Aquatic → Marine → Gulf	5.66%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.72%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	3.77%
Coastal	Environmental → Aquatic → Marine → Coastal	2.83%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Inlet	Environmental → Aquatic → Marine → Inlet	0.94%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.94%
Unclassified	Engineered → Biotransformation → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	58.49%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	16.98%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.72%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	2.83%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.94%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.94%
Microbial Mats	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats	0.94%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	0.94%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.94%
Unclassified	Engineered → Biotransformation → Unclassified → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	42.45%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment	16.04%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	12.26%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	5.66%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	3.77%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.83%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	2.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.89%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	1.89%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	1.89%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	1.89%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.94%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.94%
Sediment	Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment	0.94%
Hydrothermal Fe-Rich Mat	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat	0.94%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vents	0.94%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.94%
Sediment	Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Sediment	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001459	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k	Environmental	Open in IMG/M
3300001781	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Sites	Environmental	Open in IMG/M
3300003885	Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1	Environmental	Open in IMG/M
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental	Open in IMG/M
3300006002	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006420	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300008463	Deep sea sediment microbial communities from the Gulf of Mexico ? control with no oil added	Engineered	Open in IMG/M
3300009030	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG	Environmental	Open in IMG/M
3300009102	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG	Environmental	Open in IMG/M
3300009139	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG	Environmental	Open in IMG/M
3300009702	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV14_V59a metaG	Environmental	Open in IMG/M
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300010933	Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E	Environmental	Open in IMG/M
3300011112	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG	Environmental	Open in IMG/M
3300020230	Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR02	Environmental	Open in IMG/M
3300020231	Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04	Environmental	Open in IMG/M
3300020232	Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR05	Environmental	Open in IMG/M
3300020234	Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074	Environmental	Open in IMG/M
3300020235	Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075	Environmental	Open in IMG/M
3300020364	Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020423	Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300023442	Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-SC8	Environmental	Open in IMG/M
3300024058	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG (SPAdes)	Environmental	Open in IMG/M
3300024060	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG (SPAdes)	Environmental	Open in IMG/M
3300024431	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG (SPAdes)	Environmental	Open in IMG/M
3300024516	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG (SPAdes)	Environmental	Open in IMG/M
3300024517 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3	Environmental	Open in IMG/M
3300024521 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1	Environmental	Open in IMG/M
3300026253	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)	Environmental	Open in IMG/M
3300027685	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027872 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9	Environmental	Open in IMG/M
3300027997 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300031623	Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1	Environmental	Open in IMG/M
3300031646	Marine microbial communities from Western Arctic Ocean, Canada - CB9_33.1	Environmental	Open in IMG/M
3300031800	Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051	Environmental	Open in IMG/M
3300031804	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
MCRcombined_10539921	3300001459	Hydrothermal Vent Plume	MTYRDGLPRFSARSVRCCDTGHREACATLSERLGKP
Deep_10009291	3300001781	Hydrothermal Vent Plume	MTYRDGLPRFSARSVRCCDTGHREACATLSESHGKPPSRSHMRAARGHG
Ga0063294_104244192	3300003885	Hydrothermal Vents	MTHRDGLPRFSSRSVRCGDAGHREACATPSESLGKPPFRSRR
Ga0070727_103896791	3300005590	Marine Sediment	MTHRDGFPRFSARRAWRGDAGHRKARATPSESLGK
Ga0066368_100112916	3300006002	Marine	MTYRDGLPRFSARSVRCCDTGHREACTTLSERLGKPPFRSRMQS
Ga0068503_100143812	3300006340	Marine	MTHRDGLPRFLARSGGRSDAAHRKPRATPSESLGN
Ga0082248_100209601	3300006420	Sediment	MTHRDGFPRFSARSAWRGDAGHRKARATPSESLGKPP
Ga0066376_102550012	3300006900	Marine	MTRRDGLPRFSARSAGRGDSAYRETRATPSESLGKLPFRSST
Ga0066376_103314612	3300006900	Marine	MTHRNNLWDGLPRFSARSVGRGDAAHREARATPSESLG
Ga0066376_104318011	3300006900	Marine	MTHRDNVWDGFPRYSARSVGRGDAAHREARATPSESLGKPP
Ga0066376_105262291	3300006900	Marine	MTHRDGFPRFSARSVGRGDAAHREARATPSESLGKP
Ga0115335_1049444	3300008463	Sediment	MAHRDGFPRFSARSAWRGDAGHRKPRATPSESLGKPPFR
Ga0114950_1000144617	3300009030	Deep Subsurface	MTHGDGLPRVSARSAWRGDAGHREARATLSESLGKPPPRSSTRP
Ga0114950_100801891	3300009030	Deep Subsurface	MTPRDCFPRFSARNVRRGDASHRKACATRTESLGKPPFRSRRR
Ga0114950_103035521	3300009030	Deep Subsurface	MKTHRDGFPRFSARSVRCGDAGHREACATLPESLGK
Ga0114950_106784952	3300009030	Deep Subsurface	MTHRDGFPRVSARSAWRGDAGHRKPCATQPESLGKPPFRSGGR
Ga0114950_113020892	3300009030	Deep Subsurface	MKPHRDGFARFSARSVRCGDAGYREACATLPESLAKPPFGSRMRLVVA
Ga0114948_101388861	3300009102	Deep Subsurface	MTHRDGFPRLSARSAWRSDAGHRQPCATPPESLGKPPFRSGR
Ga0114948_101430811	3300009102	Deep Subsurface	MTLGDGLPRFSARSAWRGDAGHREARATPSESLGKPPPRSS
Ga0114948_104548021	3300009102	Deep Subsurface	MTHRDGFPRLSARSAWRSDAGHRKPCGTQPESLGKPP
Ga0114948_104699042	3300009102	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCAPSKSIGPSESLG
Ga0114948_104754601	3300009102	Deep Subsurface	MTHRDGFPRLSARSAWRGDARHRKPCGTPSESLGKPPFRSRGRTGSGRIG
Ga0114948_105662052	3300009102	Deep Subsurface	MTHRDGLPRLSARSVRCGDAGHREACATPSESLGKPPF
Ga0114948_106823311	3300009102	Deep Subsurface	MTHRDGLPRYSARSVRCGDAGHREACATPSESLGKPP
Ga0114949_108808403	3300009139	Deep Subsurface	MTHRDGFPRLSARSAWRGDARHRKPCAPSKSIGPSESLGK
Ga0114931_100011121	3300009702	Deep Subsurface	MTHRDGLPRFSARSVWQSDAGHRAPRATLSESLGKPPFRSSMG
Ga0114931_105990811	3300009702	Deep Subsurface	MTHRDGAPRFSARSARRGDAGHREACATLSESLGAP
Ga0118733_1019598773	3300010430	Marine Sediment	MTHRDGFPRFSARSAWRGDAGHREPRATPSESLGKPPFRSPGR
Ga0118733_1039150911	3300010430	Marine Sediment	MTHRDGFPRFSARRAWRGDAGHRKARATPSESLGKPP
Ga0133547_103767465	3300010883	Marine	MSHRDGLPRFSARSVRRGDAAHHEACATLSESLDK
Ga0137936_10231583	3300010933	Marine Sediment	MTHRDGLPRFSALSVRCGDAGHREACATPSESLGKPPFRSRMRPVGG
Ga0137936_10255842	3300010933	Marine Sediment	MTRRAGLPRFSARSVRRGDAGHRKACATPSESLGKP
Ga0114947_100202801	3300011112	Deep Subsurface	MTRRAGGPGFSALSVRPGDAGHRKACATPSESLGKPPFR
Ga0114947_101301851	3300011112	Deep Subsurface	MTRRAGLPRFSARSVRCGDAGHREACATPSESLGKPP
Ga0114947_101508873	3300011112	Deep Subsurface	MTHRDGLPRFSARSVRCGDAGHREACATPSESLGKPPF
Ga0114947_101648291	3300011112	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCATPPESLGKP
Ga0114947_102391764	3300011112	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGYRKPRATRSESLGKPPFRSRRR
Ga0114947_102792681	3300011112	Deep Subsurface	MTHRDGFPSVSARRAWCGDAGHRKPCGTPSESLGKPPFRSGRRTGS
Ga0114947_105709741	3300011112	Deep Subsurface	MTHRDGLPRFSARSVRRGDAGHREACATPSESLGKPPFRSRMRPV
Ga0114947_106435561	3300011112	Deep Subsurface	MTRRAGLPRFSALSVRCGDAGHREACATPSESLGK
Ga0114947_106912892	3300011112	Deep Subsurface	MTHRDGFPRFSARSAWRGDARHRKPCATQPESLGKPP
Ga0114947_109011641	3300011112	Deep Subsurface	MTRRAGGPGFSALSVRPGDAGHRKACATPSESLGKPPLRSGMRS
Ga0114947_111718741	3300011112	Deep Subsurface	MTHRDGLPRFSARSVRCDDAGHRKACATPSESLGKPPFRSRMRPVG
Ga0114947_112099261	3300011112	Deep Subsurface	MTRRAGLPRFSVRSVRRGDAGHREACAMPSESLGKPPLRSRMR
Ga0114947_114475231	3300011112	Deep Subsurface	MTRRAGLPRFSARSVRCGDAGHREACATPSESLGKP
Ga0114947_115078901	3300011112	Deep Subsurface	MTHRDGLPRFSERSVRRGDAGHREARATLSESLGKP
Ga0114947_115467702	3300011112	Deep Subsurface	MTHRDGFPRFSARSAWRGDARHRKPCAPSKSIAPS
Ga0212167_12808451	3300020230	Sediment	VTHRDGLPRFSARSVRRGDAGHREACATPSASLGKPPLRSRM
Ga0212167_12811733	3300020230	Sediment	MTHRGGLPRFSARSVRCGDAGHRKACATPSESLGKP
Ga0212168_10303233	3300020231	Sediment	MTHRDGFPRFSARSAWRGDARHRKPCAPSKSIAPSESLG
Ga0212168_11297021	3300020231	Sediment	MTHRDGLPRFSALSVRCGDAGHREACATPSESLGKPPFR
Ga0212168_13055741	3300020231	Sediment	MTRRAGLPMFSARSVRCGDAGHRKACATPSESLGKPP
Ga0212168_13825291	3300020231	Sediment	MTHGDGLPWFSALSVRPGDAGHRKACATPSESLGKPPLRSRMRP
Ga0212168_14307311	3300020231	Sediment	MTRRAGLPRFSALSVRCGDAGHREACATPSESLGKPP
Ga0212226_1054923	3300020232	Sediment	MTHRDGFPRLSARSAWRGDARHRKPCAPSKSIGPSESLGKPPFT
Ga0212226_17214710	3300020232	Sediment	MTRRAGLPRFSALSVRRGDAGHREGCATPSASLGKPPV
Ga0212226_1775811	3300020232	Sediment	MTHRDGFPRFSVRSACRGDARHRKPRATPSESLGEPPFRSGG
Ga0212227_10301091	3300020234	Sediment	MTHRDGFPRLSARSAWRGDAGHRKPCAPSKSIGPSESL
Ga0212227_10340982	3300020234	Sediment	MTHGDGFSRLSARSAWRGDAGHRKPCAPSKSTGPSESLGKPPFRSD
Ga0212227_11353631	3300020234	Sediment	MTHRDGLPRFSARSAWRGDAGHREARATPSESLGKPPPRSST
Ga0212227_11892791	3300020234	Sediment	MTHGDGLPRFSARSAWRGDAGHREARATPSESLGKPPPRSSTRP
Ga0212227_12602061	3300020234	Sediment	MTHRDGFPRFSARSAGRGDARHRKPRAPSKSILPSESL
Ga0212228_11890481	3300020235	Sediment	MTPRDCFPRFSARNVRRGDASHRKACATRTESLGKPPVRSR
Ga0212228_14138972	3300020235	Sediment	MKTHRDGFARFSARSVRCGDAGHREACATLPESLAKPPFGSRMR
Ga0211538_10030261	3300020364	Marine	MTYKDGFPRFSARSVRRGDAAHREACATLSESLGK
Ga0211680_101240301	3300020389	Marine	VIMTHKDAMWDGLPRFSARSVRRGDAAHREVRATPSEGLGKPSL
Ga0211525_100042181	3300020423	Marine	MTHGDGLPRFSARSVGRGDAAHRKPRATPSESLGK
Ga0211525_100549481	3300020423	Marine	MTHRDGLPRFSARSVGRSDAAHRKPRATPSESLGK
Ga0187827_100659414	3300022227	Seawater	MTHRDGLPRFSARSVGRSDAGHRKPRATPSESLGK
Ga0256751_10279791	3300023442	Hydrothermal Fe-Rich Mat	MTHGDGLPRFSALSVRCGDAGHREACATPSESLGK
Ga0209997_100048556	3300024058	Deep Subsurface	MARRAGLPRFSALSVRRGDAGHREARATPSESLGKPPLRSR
Ga0209997_101077941	3300024058	Deep Subsurface	MTRRAGLPRFSALSVRCGDAGHREACATPSESLGKPPFR
Ga0209997_102560431	3300024058	Deep Subsurface	MTHRDGFPRLSARSAWRGDARHRKPCAPSKSIGPS
Ga0209997_103810111	3300024058	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCGTPPESLGK
Ga0209987_100569161	3300024060	Deep Subsurface	MTHRDGLPRFSARSAWRGDAGHREARATPSESLGKPSPR
Ga0209988_101791121	3300024431	Deep Subsurface	MTHGDGLPRFSARSAWRGDAGHRETRATLSESLGKPPPR
Ga0209988_101973172	3300024431	Deep Subsurface	MKTHRDGFARFSARSVGCGDAGHREACATLPESLAK
Ga0209988_102371023	3300024431	Deep Subsurface	MKTHRDGFARFSARSVGCGDAGHREACATLPESLAKPP
Ga0209988_106467712	3300024431	Deep Subsurface	MKTHRDGFARFSARSVRRGDAGYREACATLPESLAK
Ga0209980_100162067	3300024516	Deep Subsurface	MTHRDGFPRFSARSGWCGDARHRKPCAPSTRIGPSESLGKPPFR
Ga0209980_100895301	3300024516	Deep Subsurface	MTHRDGFPRFSARSAWRGDAGHRKPCVTPPESLGKPPFRSRGRTAGG
Ga0209980_100959383	3300024516	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCATPPESLGKPPFRSGGRTAGG
Ga0209980_101014623	3300024516	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCAPFESYGPPES
Ga0209980_101034021	3300024516	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCGTPSESLGKP
Ga0209980_101708651	3300024516	Deep Subsurface	MTHRDGFPRLSARSAWRGDAGHRKPCATPSESLGKPPFRS
Ga0209980_103009242	3300024516	Deep Subsurface	MTHRDGLPRFSALSVRPGDAGHRKACATPSESLGKPP
Ga0209980_103388152	3300024516	Deep Subsurface	MTRRDGLPRFSVRSVRCGDAGHRKACATPSESLGKPPFRSRMRP
(restricted) Ga0255049_105295481	3300024517	Seawater	MTRRDGLPRFSARRVGCGDAGHRKARATPSDNLGK
(restricted) Ga0255056_105020331	3300024521	Seawater	MMTPRDGFPGSSARSAWRGDAGHRKARATPSESLGKPPFRSP
Ga0208879_10226186	3300026253	Marine	MTHGDGLPRFSARSAWRGDAGHREARATTSESLGKPPF
Ga0208879_10879391	3300026253	Marine	MTHRDGLPRFSARSVRRGDAAHREAHATPSESLGNP
Ga0208879_11554532	3300026253	Marine	MTHRDGLPRFSARSAGRGDAAHREARATPSESLGK
Ga0208879_11809261	3300026253	Marine	MTHEDGLPRLSARSVGRGDAAHREARATPSESLGKPPFRSPPQPVGERRE
Ga0209554_12410741	3300027685	Marine	MTHRDGLPRISARSAGRGDAAHREARATPSESLGKP
(restricted) Ga0255058_100033979	3300027872	Seawater	MTHRDGVPRFSARSAWRGDAGHRKARATPSESLGKPPFRS
(restricted) Ga0255058_100332074	3300027872	Seawater	MTHRDGFPRFSARSAWRGDAGHRKARATPSESLGKPPFRS
(restricted) Ga0255058_102500391	3300027872	Seawater	MTHGDGFPRFSARSAWRGDAGHRKARATPSESLGKPPF
(restricted) Ga0255057_100362881	3300027997	Seawater	MTHRDGLPGFSARSVGCGDAGHHKARATPSENPGK
(restricted) Ga0255057_101870761	3300027997	Seawater	MTHRDGFPRFSARSAWRGDAGHRKPRATPSEGLGK
Ga0265303_110146882	3300028600	Sediment	MTHRDGFPRLLARSGRRGDAGHREAGATQSKSLGKPPLRSQMQ
Ga0302123_100696963	3300031623	Marine	MTHRDGFPRFSARTVRCRDAGHRKTDATQSESRGKPPFRSRM
Ga0302133_103840821	3300031646	Marine	MTYRDGLTRFSARSVRRGDSGHREACATLSVNLVKPPFR
Ga0310122_100219976	3300031800	Marine	MTHRDGFPRFSARSVGRGDAAHREARATPSESLGKPP
Ga0310124_101662461	3300031804	Marine	MKTHRDGFPRFSARSARRGDAGHRETCATQGTPVAESLGKP
Ga0310342_1001488565	3300032820	Seawater	MAHGDGLPRFSAWSVRRGDAAHRKPRETPSESLGKPCRW
Ga0310342_1004791041	3300032820	Seawater	MTHRDGLPRFSARSVGRSDATHRKPRATPSESLGRLPFRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters