3300001459: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k

Overview

Basic Information

• IMG/M Taxon OID: 3300001459
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0057410 | Ga0012510
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 198169809
• Sequencing Scaffolds: 35
• Novel Protein Genes: 40
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus → unclassified Greenvirus → Cyanophage S-SSM6b	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid Cayman Rise, Cayman Islands, UK
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000 to 4000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002030	Metagenome	601	Y
F004699	Metagenome / Metatranscriptome	427	Y
F005149	Metagenome / Metatranscriptome	410	Y
F005649	Metagenome / Metatranscriptome	394	Y
F006865	Metagenome / Metatranscriptome	363	Y
F009237	Metagenome / Metatranscriptome	321	Y
F010325	Metagenome / Metatranscriptome	305	Y
F012921	Metagenome / Metatranscriptome	276	Y
F013899	Metagenome / Metatranscriptome	267	Y
F015945	Metagenome / Metatranscriptome	251	Y
F016014	Metagenome / Metatranscriptome	250	Y
F017149	Metagenome / Metatranscriptome	242	Y
F019664	Metagenome / Metatranscriptome	228	Y
F021319	Metagenome	219	N
F023123	Metagenome	211	Y
F032684	Metagenome / Metatranscriptome	179	Y
F037257	Metagenome / Metatranscriptome	168	Y
F039182	Metagenome	164	Y
F041436	Metagenome	160	Y
F042560	Metagenome	158	Y
F042931	Metagenome	157	N
F045995	Metagenome	152	N
F050430	Metagenome / Metatranscriptome	145	N
F055781	Metagenome / Metatranscriptome	138	N
F058220	Metagenome / Metatranscriptome	135	N
F059066	Metagenome	134	Y
F061920	Metagenome / Metatranscriptome	131	Y
F063751	Metagenome	129	N
F063767	Metagenome	129	N
F064883	Metagenome	128	Y
F067832	Metagenome	125	Y
F076171	Metagenome	118	N
F077773	Metagenome / Metatranscriptome	117	Y
F078840	Metagenome	116	N
F084703	Metagenome / Metatranscriptome	112	Y
F093968	Metagenome	106	Y
F096028	Metagenome	105	Y
F099450	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MCRcombined_1001166	Not Available	748
MCRcombined_1002520	Not Available	924
MCRcombined_1002732	Not Available	748
MCRcombined_1010074	Not Available	659
MCRcombined_1014687	Not Available	614
MCRcombined_1018543	Not Available	510
MCRcombined_1023254	All Organisms → cellular organisms → Archaea	516
MCRcombined_1026145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	564
MCRcombined_1047354	Not Available	745
MCRcombined_1048914	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	512
MCRcombined_1053992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543
MCRcombined_1059884	Not Available	613
MCRcombined_1072897	Not Available	957
MCRcombined_1073144	Not Available	554
MCRcombined_1074981	Not Available	850
MCRcombined_1092049	Not Available	856
MCRcombined_1092159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	974
MCRcombined_1092544	Not Available	726
MCRcombined_1094949	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus → unclassified Greenvirus → Cyanophage S-SSM6b	564
MCRcombined_1104160	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	870
MCRcombined_1116268	Not Available	606
MCRcombined_1136975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	828
MCRcombined_1144757	Not Available	526
MCRcombined_1150629	Not Available	866
MCRcombined_1203974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	532
MCRcombined_1211712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	673
MCRcombined_1217360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	579
MCRcombined_1287748	Not Available	839
MCRcombined_1320875	Not Available	522
MCRcombined_1337000	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	526
MCRcombined_1353537	Not Available	620
MCRcombined_1375569	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	507
MCRcombined_1383821	Not Available	576
MCRcombined_1448363	Not Available	554
MCRcombined_1526913	Not Available	672

Sequences

Scaffold ID	Protein ID	Family	Sequence
MCRcombined_1001166	MCRcombined_10011663	F012921	MADEFDFGFSAVSTEEFSKTQTVTEVQPSTASSEEFDELKKKLDSISSLIQTLGDREDTSLFDETGEIVAANGEKISRVEDKIDKILAMESSQVASALEEQGSSIRA
MCRcombined_1002520	MCRcombined_10025201	F002030	MIEVLVFGMVVLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYETYTSILGYPRTSTPQKGLYLKHFIDEPNWIYLWVLGDGNVPMSYQIIYSRETHNSLEGVSGKSEEGKFMVLGVDESEMDGNEEGEEGEDSGGGFTIGGDMSFYEWDFETNLPSKNVE*
MCRcombined_1002732	MCRcombined_10027321	F039182	MLIIVLAALSLNGCADTADAEDSTAITPVDNQESTDSSTDSSGETIWIAIVMTWNPVNRTIDKEFTTEVACWNYYENGVGEGKFGTQHLDHQDNPPTKDFHFGPDHLEYPIRTYR
MCRcombined_1004585	MCRcombined_10045852	F016014	MNSILESKEDAVVRYELKGGGCGGLIAKWDTELHYHPEEGEMTWPLEDGVFVVDESTAEFIDGGTVNYDLTNFMPNFVVVVPGKGQCGCGSSFVVPK*
MCRcombined_1010074	MCRcombined_10100742	F059066	MSINIKVKNITEEQYNHFFQKWLYTYGGATDVVSLEDYIKEYDSDLYGDIDTYSNKVCPCVMCLEENIDG*
MCRcombined_1014687	MCRcombined_10146871	F019664	VKDTDDDKQVDGSDAGAVPATSTNSRVMYQGIFDFAKILNAYYYTPDEWSRQGMWGPLPDDRNSLMGVKQHRRTDESL*
MCRcombined_1014970	MCRcombined_10149701	F067832	MQPFDKLNDRSYGNTGTPITMDMGGWNIFYMRDGIEQRCFLKEGTLLNTVAVFNSLERTSGFDTPLRIERLDIF
MCRcombined_1018543	MCRcombined_10185432	F064883	MDWIIDRFXXXXSSYAAAGAAVIGIGVIINQPMLIMLGIVGGAVGFVLKDKGVI*
MCRcombined_1023254	MCRcombined_10232541	F063751	SETLIKPTTPPEGSVSGGIPATPEPGSKEMGSASGYRQAQKGGESIFAGNKKLWGKWEDHRIGKKVAGREWKGGKLVDLLPKGVK*
MCRcombined_1026145	MCRcombined_10261452	F023123	MDRNYFKEKHTGKKSKGSHTICCGQDKDRHILNKNKKDEWEMIERHCEDHLTHYSSVKDITPICCKVCGRLLEYRCTLDRESYYNKNTIDTK*
MCRcombined_1030193	MCRcombined_10301931	F099450	MPKIRQQPRXXXXXXXXXDETWAAIVMTWNPVVRTIDKEFSSEVDCWNHYEGGTGESKFGTQHLDHQNNPPTKDFHFGPDHLEYPIRTYKGKDGQGQVWLTCDIKGRYEGL*
MCRcombined_1047354	MCRcombined_10473543	F042931	MNKEEFYISDWDMMMKIWSDCPVNGCKNKINLNLNTGKCFPHSEGSYQWKSFKILFKNTFINS
MCRcombined_1048914	MCRcombined_10489141	F006865	VGKISQIVNVNDTLYEVLGIMSVERSNDKGTDYWKERWGADNVLRNGNDYYYCRVIIN
MCRcombined_1053992	MCRcombined_10539921	F093968	MTYRDGLPRFSARSVRCCDTGHREACATLSERLGKP
MCRcombined_1059884	MCRcombined_10598842	F009237	VNKRLTKLKGLIDDGSVPTILEVRTNSREYSYEDVIALDYGFVQDLYMGNENFETWFTYIGPKPIKLNDLTINKNEMIEIILDYYEKL*
MCRcombined_1072897	MCRcombined_10728972	F005649	DRYRLVLFDNKVQRSLSKTRYKRLTNLNSDNSLEGLVIDWQFANTERMFDNFVEPVMDYQPTYAFA*
MCRcombined_1073144	MCRcombined_10731441	F041436	IIKDYIDGMEKIMKKYSKPLGALLTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEYAEDFEGDDDIEGFPFELYDTPEDMVDYITRTVQRIKL*
MCRcombined_1074981	MCRcombined_10749811	F063767	CCKLLKDDNTGCSLGDDRPLFCKLYPLLENKSGRMVINNWAYLHCPKPQDYELDKVVDGKYHYKLKKKHKNKRDELILDDKIENVVKQ
MCRcombined_1074981	MCRcombined_10749812	F055781	GVAMGCKLYNKNVKTIYPVALSNYVYKNKKMWYDRLKDRSKFDGNFKVVQSDYPYQYKLKLDESLPLDQTYEAKAWDWMVKNLEPSEKVXXXXKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEKTLDREVRRKTKVTKHDF
MCRcombined_1092049	MCRcombined_10920493	F005149	CKAVTYPGHYFYDHLEDVHMMPIKRERIIAVGIDKYGQEKGLAEEETNDECMERFKFTHPEYGTEICWCPNCIGGETLDKVSKVCKIHGQIYVKGKHGA*
MCRcombined_1092159	MCRcombined_10921592	F050430	MDKKLKENLIVGTKIVGMLFFLIILIATLVWPGGVDTLANLFLTKE*
MCRcombined_1092544	MCRcombined_10925442	F078840	VSPNPLIVKLDNIPTLIFLLDLVISILFESDTYSDNFLSKSIFGELLSSTINIV*
MCRcombined_1094949	MCRcombined_10949492	F009237	VNKRLTKLKGLIDDGTVPTILEIRTNSREYSYEDVIALDYGFIQDLYMGNEQFETWFTYIGPKPIKLNDLILNKNEMFEILLNYY
MCRcombined_1104160	MCRcombined_11041602	F013899	VKLKRXXXXAINNMFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTNR*
MCRcombined_1116268	MCRcombined_11162682	F010325	MLRKELVSDKLDQLQLAVDRLKSSLVVPTDPEDVVTPTEVIIQQLQQIENQIDQIVNLIELEEE*
MCRcombined_1136975	MCRcombined_11369751	F058220	MQIFVDCDDTLVLYDSHTGVHPYGVRHGEPWHPNQPLVDSLLETEHPVFVWSGGGAWYAEIVAGKLGLDFPCLDKDETAFELIQEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPDQL*
MCRcombined_1144757	MCRcombined_11447571	F019664	VKDTDDDKQVDGSDEGAIPSTSTNLRGPYDGIFEFSEKQREYYYTQREWDRTIGYGKVPDERNTELRGVKQDRRTDETLF
MCRcombined_1144886	MCRcombined_11448862	F004699	MNGGIYTLRLKLSDFLNDPLEHLVVDKIHEIYKIQNFKLQLWYDEGELTPADLKSFIEKYESLLHYKTTIRPNRTRDFTQFTWYNIIHKDDKVIDFPLRFQYEHESGWRLGGVLDGLEQFRGCLKFVTSPKPPRDDRPPKRKQKRNDYED*
MCRcombined_1150629	MCRcombined_11506291	F017149	MFINGVETNESPTDFLGKIKEATNVPYYIGCANPYARFEDRGYFKGTIAQVTLWSSCINPEEASYLYNGGFPRNVTDKKNFDGWKQGSEKYKSASKVVGYWNFDNVVGDRVIDKSGNDNHAKIHGAIKKEKELRIGSVALIPNRRDGKYTCLEHEENGWSQTKFSHWETRE
MCRcombined_1203974	MCRcombined_12039741	F076171	YQSAKIDSSQFFRVINGFQKPGFGFFEKLAIAFPDLNLSWFLTGEGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEF
MCRcombined_1211712	MCRcombined_12117121	F042560	KLRKKGKFPIVSMVTKNNIKEFMKVAVMLVFHISSWQ*
MCRcombined_1217360	MCRcombined_12173601	F021319	PSATTISGTKISPPPTPKRLDIIPAKKLAPAEKTSKIRDVSKGFRSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
MCRcombined_1287748	MCRcombined_12877481	F045995	MWTNNIVTFYGADEDLKKVAERLYSPGETSEEDNCFDFNKIIPFPNELSYIHSSRFNSGKKMIHGREYEQWYYVNSDGKMIENNPDNYFEKSRLKGMSSRMEKQFMRKYGALNDTDWRAINWGTIWNSNSGPGEKYREKLVYNFRTNYGSARLIVLEIESMIYRGEFPKVKMMWEHDNVDVHLCFMEDDEYVPDPTPVFTVGFAETEKSTAEYYKW*
MCRcombined_1320875	MCRcombined_13208752	F015945	TPTEAEIAAHFSAMDDSVTLIHATIADDTDALKMMDAAEVKLMVTRNTDHLEIQSAKDWYSESSNSKTPYTEAVTAGKAYVAE*
MCRcombined_1337000	MCRcombined_13370002	F061920	RATCERRRHVNYLNKNGRRFLDKTHFANFIKPEKSDKSCHYEKQESIRDGLTKRLIAEEASRKNAS*
MCRcombined_1353537	MCRcombined_13535372	F037257	MKKFTIEVSHASAGQLQTIAAELKIMANSWEKFGPRILINKQAVQPPQLRMTPTETINKRARKRHKLAMFI*
MCRcombined_1375569	MCRcombined_13755692	F077773	MFXXXXXXXXXXXXXNEIYITKFKSKRKMFIKQQLGLELYSAVTPKLQPIPTCG*
MCRcombined_1383821	MCRcombined_13838211	F096028	DFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
MCRcombined_1448363	MCRcombined_14483631	F084703	SHLRGMFSTAVPRFLPDKLEPLGLSLSGQLRVAS*
MCRcombined_1526913	MCRcombined_15269132	F032684	IQINEACPLNITKRTKKVMILLCMLRVLALIDKFKSNFSLFKAEEVMFLPFGIITKNTLKNIIQPKITPTDKKANRAPKIFVKPNDITAPIMSKTTGKMILLFINLDLQIRS*