3300008463: Deep sea sediment microbial communities from the Gulf of Mexico ? control with no oil added

Overview

Basic Information

• IMG/M Taxon OID: 3300008463
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118500 | Gp0136535 | Ga0115335
• Sample Name: Deep sea sediment microbial communities from the Gulf of Mexico ? control with no oil added
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas, Austin
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72151645
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Methylohalomonas → Methylohalomonas lacus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Azoarcus → unclassified Azoarcus → Azoarcus sp. KH32C	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Sea Sediment Microbial Communities From The Gulf Of Mexico
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Sediment → Deep Sea Sediment Microbial Communities From The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.0
  • Long. (^o): -88.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006941	Metagenome / Metatranscriptome	361	Y
F019802	Metagenome / Metatranscriptome	227	Y
F028812	Metagenome	190	Y
F048324	Metagenome	148	Y
F062779	Metagenome	130	Y
F074897	Metagenome / Metatranscriptome	119	Y
F074900	Metagenome	119	Y
F077325	Metagenome	117	Y
F081360	Metagenome	114	Y
F087249	Metagenome / Metatranscriptome	110	Y
F093968	Metagenome	106	Y
F101189	Metagenome	102	Y
F105206	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115335_102379	All Organisms → cellular organisms → Bacteria → Proteobacteria	3100
Ga0115335_102754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	2929
Ga0115335_102771	Not Available	2924
Ga0115335_104944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2358
Ga0115335_107520	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	2011
Ga0115335_111925	All Organisms → cellular organisms → Bacteria	1682
Ga0115335_112668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1644
Ga0115335_114598	Not Available	1560
Ga0115335_117195	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1463
Ga0115335_122374	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1320
Ga0115335_128366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Methylohalomonas → Methylohalomonas lacus	1198
Ga0115335_129331	Not Available	1182
Ga0115335_135915	All Organisms → cellular organisms → Bacteria	1087
Ga0115335_141348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Azoarcus → unclassified Azoarcus → Azoarcus sp. KH32C	1027
Ga0115335_142497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1016

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115335_102379	Ga0115335_1023792	F105206	MEESLLSGSGLIAAVEVFTAIAVVIGIVFGLVELRQATRNRRDHAAVDIVRTVQTQEVRQAVRRIFDLPLDADPQLIRNDPVLLAAALAVDSACEMWGCMVFEGVVDHQLLDRMVGGWVRGTWTRLRVWVESERTETQSVNVGEWWQWLYELLEADPDQGKKLGAHIAYQGRKAR*
Ga0115335_102754	Ga0115335_1027541	F101189	MTDVVEIAKERQARLAAEFGRLDDFIRMAEALVKNSQSKSSKVSDTEDEKAAGGNGAEAEREDLSVRKLKAKELMRNLRTSHNEPALDRREHFKFRERA*
Ga0115335_102771	Ga0115335_1027712	F048324	VAAAFIAACDPQPTSVEDIDFVKLEGMQSECASRAASAAMESFSDDTAWSDLLSVEGAGGAVAAITDATQLELQSCITDIYLMGIEDGRMLEREIY*
Ga0115335_104944	Ga0115335_1049444	F093968	MAHRDGFPRFSARSAWRGDAGHRKPRATPSESLGKPPFR
Ga0115335_107520	Ga0115335_1075201	F077325	MSEKGNWTEKDEVSIKAIIVNMINQKQMFRDLGEKGELPRSFNIQNSREYILGIFTGIVINLFANYWVGEHEAGLLPEDLAYLYHKIALSQKMIVEGLFE*
Ga0115335_111925	Ga0115335_1119251	F081360	MELLLLLAVVALGTIAWLLFRIDAKLQAIGHMIHDASKPEDQRQLTD*
Ga0115335_112668	Ga0115335_1126682	F074897	VTTIDTQFPQLDPNTRRIAEQLAREALVSAQVLSDELQQYVEELDAHSSSDEFFDHDVAKRIAALCWKLLDALPAEPDEKQHRLTQLAINYFVLAEDAQDDNYSMAGFEDDLQVVTAVIHELGLNQLLEE*
Ga0115335_114598	Ga0115335_1145981	F019802	MGVVDAAGFRGSRQSAFELMGLNLKLFDSMFGSQSTVAPPLPTAVDFIASLPEAAPIFTTTYSPLFPGIARLLDATEILAFLSSHHSLPIDMKPAIPRFIK
Ga0115335_117195	Ga0115335_1171951	F105206	MEDSLFGGPNLIVAVEIFTAIAVVIGIIFGLMEFRQATRNRRDHAAVDIVRTVQTQEVRQAVRQIFDLPLDADPQLIRNDPELLAAALAVDSACEMWGCMVFEGVVDHKLLDRMVGGWVRGTWARLRAWVESERVETQSVNVGEWWQ
Ga0115335_122374	Ga0115335_1223742	F006941	LNQTLQKVMRGFGRQCRGQGKVFVKLVRQTERKLLELGDSIELWSQKAKALLCQDTHLSEAQRERLLRDLESASDAHRQIAKQSQRLTQGKKLSQFKIVNAYDPTIAPIIKGKSNCPAQFGRKTGILSDPACGYIFANRVPKGNPSDPSYVLPMLDKVQQAIDLVTSPQRFKVHSMGGDLGLNDAELRQALQGRGILTVGIPTTVEPINPTPSSEEVLDILNTSGLNRIRTPYQVHLACSSGYSRPVVEGHIAT
Ga0115335_128366	Ga0115335_1283663	F028812	MDPDLENVIRQALGDALAAGKDHLSQTELAVRAVQRARPDMTASDALVAVNLARRE*
Ga0115335_129331	Ga0115335_1293313	F062779	MPLITDSEMEDFDAAILGAGFEVDDFHVLDQQYEPTAKEQHTITGTVTVHRISTDEATTYSAGHLSTWVSEFEIDLHEGKFGEP*
Ga0115335_135915	Ga0115335_1359151	F087249	VIDEPFEAGQMQDTDELTTEAIRERMDAHIAAASESAEIDPANIGLIDDLAAKFLDSLTPKEMGFLMYDNPQPLSLQEVDSDIREKYRAKYGTKNLKRGQFFRLESGTITFFTHEHNLKFKVDN*
Ga0115335_141348	Ga0115335_1413483	F074900	MAAKIVNLINPDEDETLCATVEDAMETLAAMVEKFNSQGYRVDEQRLADDEYPQYAVYDRSDTWIGTYTISLQ*
Ga0115335_142497	Ga0115335_1424971	F074897	MTIELQFSQFDPNTRRIAEQLAREALVSVQVLSDELQQYVEQLDAHSSNADFIDHDVARRIAALCWKLLDALPAEPDERQHRLTQLAINYFVLAEDAQDDNYSMVGFEDDL