NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092391

Metagenome / Metatranscriptome Family F092391

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092391
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 47 residues
Representative Sequence GPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Number of Associated Samples 91
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.13 %
% of genes from short scaffolds (< 2000 bps) 97.20 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.916 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.449 % of family members)
Environment Ontology (ENVO) Unclassified
(35.514 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.682 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.99%    β-sheet: 0.00%    Coil/Unstructured: 63.01%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF01649Ribosomal_S20p 96.26
PF06574FAD_syn 1.87
PF00133tRNA-synt_1 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0268Ribosomal protein S20Translation, ribosomal structure and biogenesis [J] 96.26
COG0196FAD synthaseCoenzyme transport and metabolism [H] 1.87
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.93
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.93
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.93
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.92 %
All OrganismsrootAll Organisms13.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004101|Ga0058896_1010075All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria539Open in IMG/M
3300004102|Ga0058888_1442180All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria504Open in IMG/M
3300004121|Ga0058882_1815923All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria503Open in IMG/M
3300004799|Ga0058863_11653862All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio sulfidiphilus655Open in IMG/M
3300005564|Ga0070664_101565752All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria624Open in IMG/M
3300005578|Ga0068854_101663380All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria583Open in IMG/M
3300005591|Ga0070761_11120611All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria501Open in IMG/M
3300005842|Ga0068858_100088879All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales2875Open in IMG/M
3300005842|Ga0068858_100210644All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1839Open in IMG/M
3300005921|Ga0070766_11123076All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria543Open in IMG/M
3300006176|Ga0070765_101381376Not Available664Open in IMG/M
3300010361|Ga0126378_11123742Not Available886Open in IMG/M
3300011120|Ga0150983_10663509Not Available506Open in IMG/M
3300011120|Ga0150983_13571056Not Available536Open in IMG/M
3300011120|Ga0150983_13793853Not Available510Open in IMG/M
3300012212|Ga0150985_117659781Not Available516Open in IMG/M
3300012929|Ga0137404_11718756Not Available583Open in IMG/M
3300016698|Ga0181503_1163056Not Available524Open in IMG/M
3300019155|Ga0184568_104982Not Available509Open in IMG/M
3300019170|Ga0184570_113890Not Available535Open in IMG/M
3300019179|Ga0184593_115815Not Available517Open in IMG/M
3300019181|Ga0184594_101296Not Available518Open in IMG/M
3300019182|Ga0184598_119779Not Available554Open in IMG/M
3300019185|Ga0184587_121336Not Available525Open in IMG/M
3300019187|Ga0184584_130754Not Available502Open in IMG/M
3300019187|Ga0184584_144722Not Available531Open in IMG/M
3300019260|Ga0181506_1343106Not Available536Open in IMG/M
3300019268|Ga0181514_1450522Not Available530Open in IMG/M
3300019270|Ga0181512_1405606Not Available534Open in IMG/M
3300020069|Ga0197907_11449934Not Available509Open in IMG/M
3300020078|Ga0206352_11208946Not Available500Open in IMG/M
3300020081|Ga0206354_10679091Not Available521Open in IMG/M
3300022502|Ga0242646_1034981Not Available529Open in IMG/M
3300022502|Ga0242646_1036470Not Available522Open in IMG/M
3300022505|Ga0242647_1044144Not Available514Open in IMG/M
3300022505|Ga0242647_1046834Not Available504Open in IMG/M
3300022508|Ga0222728_1114864Not Available522Open in IMG/M
3300022509|Ga0242649_1066599Not Available533Open in IMG/M
3300022509|Ga0242649_1078229Not Available506Open in IMG/M
3300022511|Ga0242651_1042892Not Available542Open in IMG/M
3300022511|Ga0242651_1047144Not Available525Open in IMG/M
3300022512|Ga0242676_1051819Not Available514Open in IMG/M
3300022522|Ga0242659_1138202Not Available510Open in IMG/M
3300022523|Ga0242663_1097862Not Available581Open in IMG/M
3300022523|Ga0242663_1132095Not Available523Open in IMG/M
3300022527|Ga0242664_1151749Not Available512Open in IMG/M
3300022529|Ga0242668_1120840Not Available551Open in IMG/M
3300022529|Ga0242668_1146992Not Available516Open in IMG/M
3300022530|Ga0242658_1040908All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Phytomonas → unclassified Phytomonas → Phytomonas sp. EM1943Open in IMG/M
3300022530|Ga0242658_1211469Not Available532Open in IMG/M
3300022531|Ga0242660_1245241Not Available509Open in IMG/M
3300022533|Ga0242662_10326538Not Available518Open in IMG/M
3300022708|Ga0242670_1066381Not Available543Open in IMG/M
3300022708|Ga0242670_1084657Not Available502Open in IMG/M
3300022712|Ga0242653_1115352Not Available504Open in IMG/M
3300022716|Ga0242673_1130944Not Available512Open in IMG/M
3300022717|Ga0242661_1098516Not Available609Open in IMG/M
3300022718|Ga0242675_1095768Not Available565Open in IMG/M
3300022721|Ga0242666_1194689Not Available515Open in IMG/M
3300022722|Ga0242657_1226481Not Available527Open in IMG/M
3300022722|Ga0242657_1255336Not Available504Open in IMG/M
3300022724|Ga0242665_10351852Not Available528Open in IMG/M
3300022726|Ga0242654_10381855Not Available537Open in IMG/M
3300022726|Ga0242654_10434576Not Available510Open in IMG/M
3300023542|Ga0247540_104265Not Available514Open in IMG/M
3300023560|Ga0247514_121326Not Available527Open in IMG/M
3300023660|Ga0247550_104974Not Available516Open in IMG/M
3300023689|Ga0247517_121004Not Available513Open in IMG/M
3300025928|Ga0207700_11985096Not Available508Open in IMG/M
3300027066|Ga0208236_1011843Not Available606Open in IMG/M
3300027895|Ga0209624_10115017All Organisms → cellular organisms → Bacteria → Proteobacteria1763Open in IMG/M
3300029701|Ga0222748_1122427Not Available526Open in IMG/M
3300030580|Ga0311355_11617372Not Available556Open in IMG/M
3300030617|Ga0311356_11488952Not Available612Open in IMG/M
3300030622|Ga0265391_10255147Not Available563Open in IMG/M
3300030730|Ga0307482_1311234Not Available509Open in IMG/M
3300030738|Ga0265462_12173431Not Available545Open in IMG/M
3300030739|Ga0302311_10365033All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1026Open in IMG/M
3300030741|Ga0265459_14216692Not Available504Open in IMG/M
3300030806|Ga0265731_104235Not Available529Open in IMG/M
3300030812|Ga0265734_106260Not Available528Open in IMG/M
3300030832|Ga0265752_109251Not Available522Open in IMG/M
3300030836|Ga0265767_120297Not Available501Open in IMG/M
3300030886|Ga0265772_107360Not Available517Open in IMG/M
3300030888|Ga0265769_120705Not Available521Open in IMG/M
3300030942|Ga0247549_105558Not Available504Open in IMG/M
3300030963|Ga0265768_116252Not Available521Open in IMG/M
3300030969|Ga0075394_11929551Not Available500Open in IMG/M
3300031011|Ga0265774_106269Not Available531Open in IMG/M
3300031040|Ga0265754_1035258Not Available531Open in IMG/M
3300031057|Ga0170834_107801393Not Available502Open in IMG/M
3300031122|Ga0170822_13606979Not Available511Open in IMG/M
3300031122|Ga0170822_14143720All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1247Open in IMG/M
3300031634|Ga0310106_116731Not Available500Open in IMG/M
3300031667|Ga0310111_141090Not Available517Open in IMG/M
3300031690|Ga0310101_128381Not Available508Open in IMG/M
3300031708|Ga0310686_110945950Not Available671Open in IMG/M
3300031814|Ga0247548_107828Not Available535Open in IMG/M
3300031815|Ga0316045_125585Not Available534Open in IMG/M
3300031815|Ga0316045_127569Not Available506Open in IMG/M
3300031816|Ga0316042_129939Not Available508Open in IMG/M
3300031868|Ga0316038_116352Not Available534Open in IMG/M
3300031872|Ga0316033_112774Not Available533Open in IMG/M
3300031891|Ga0316039_119054Not Available511Open in IMG/M
3300033158|Ga0335077_11568214Not Available628Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil36.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil30.84%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.48%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.80%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.80%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.93%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004101Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004102Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004121Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004799Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016698Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019155Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019170Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019179Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019181Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019182Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019185Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019187Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019268Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019270Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020069Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022502Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022505Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022508Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022509Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022511Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022512Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022529Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022708Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022712Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022716Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022718Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023542Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023560Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023660Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023689Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027066Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300029701Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030622Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE044SO (Eukaryote Community Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300030739Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3EnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300030806Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030812Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030832Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030836Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030848Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030886Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030888Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030934Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030942Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030963Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031011Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031122Oak Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031634Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031667Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031690Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031814Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031815Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031816Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031868Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA1 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031872Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031891Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0058896_101007523300004101Forest SoilVRRLRFRGPHFLVSAATGRGTKELAQAIMVFLEQQAAREALAREAPAGDTAA*
Ga0058888_144218023300004102Forest SoilFRGPHFLVSAATSRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA*
Ga0058882_181592313300004121Forest SoilFLISAATGRGTKELAQAVMAFLEEQRALEARGPEEPAGDTAA*
Ga0058863_1165386213300004799Host-AssociatedEKLAREIVRKLRFRGPHFLVSAATGRGTRELAQAIMVFLEEQQAREAHAHEAPAGDTAA*
Ga0070664_10156575213300005564Corn RhizospherePHFLVSAATGRGTKELTQKIMVFLEEQQAHEAHDLESPAGDTAA*
Ga0068854_10166338033300005578Corn RhizospherePHFLVSAATGRGTKELAQKIMVFLEEQQAREAHDLESPAGDTAA*
Ga0070761_1112061113300005591SoilVSAATGRGTKELAQAVMGFLEEQRVREAHAREAPAGDTAA*
Ga0068858_10008887943300005842Switchgrass RhizosphereLRFRGPHFLVSAATGRGTRELSEAVMAFLEERDREARDRASSAADTADAQPAST*
Ga0068858_10021064413300005842Switchgrass RhizospherePHFLVSAATGRGTKELSQAVMVFLEEQQAREVRDLEAPAGDTAA*
Ga0070766_1112307623300005921SoilLVSAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA*
Ga0070765_10138137613300006176SoilGRGTKELAQAVMGFLEEQRVREAHAREAPAGDTAA*
Ga0126378_1112374233300010361Tropical Forest SoilFLVSAATGRGTKELAQKIMSFLEEQQAHEAHDLESPAGDTAA*
Ga0150983_1066350913300011120Forest SoilPHFLISAATGRGTKELAQAIMGFLEEQRALEARGPEAPAGDTAA*
Ga0150983_1357105623300011120Forest SoilWRLRFRGPHFLVSAATGRGTKELAQAVMVFLEEQQARGVHAPEEPAGDTAA*
Ga0150983_1379385313300011120Forest SoilVRRLRFRGPHFLVSAATGRGTKELAQVVMVFLEEQQAREAHALEAPAGDTAA*
Ga0150985_11765978123300012212Avena Fatua RhizospherePHFLVSAATGRGTKELTQAIMVFLEEQQAHEAHGLESPAGDTAA*
Ga0137404_1171875623300012929Vadose Zone SoilARDIMRRLRFRGPHFLVSAATGRGTKELSQAVMVFLEEQQAREARALEAPAGDTAA*
Ga0181503_116305613300016698PeatlandLRFRGPQFLISAATGRGTRELVQAVMVFLEDQRRALEAHGPEAPAGDTAA
Ga0184568_10498213300019155SoilHFLVSAATGRGTKELAQAIMGFLEEQAREARAREVPAGDTAA
Ga0184570_11389023300019170SoilRRLRFRGPNFLVSAATGRGTKELAQAVMGFLEEQRAREAHAREAPAGDTAA
Ga0184593_11581513300019179SoilRFRGPHFLVSAATGRGTKELAQAIMGFLEEQAREVLAREAPAGDTAA
Ga0184594_10129613300019181SoilRRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0184598_11977923300019182SoilGQHFLISAATGRGTQELAQAVMVFLEEQRALEARGPEAPAGDTAA
Ga0184587_12133613300019185SoilVYSLRFRGQHFLISAATGRGTQELAQAVMVFLEEQRALEAHGPEAPAGDTAA
Ga0184584_13075413300019187SoilPRFLISAATGRGTKELAQAVMGFLEEQRALAARAREEPAGDTAA
Ga0184584_14472213300019187SoilVRRLRFRGQHFLISAATGRGTQELAQAVMVFLEEQRALEARGPEAPAGDTAA
Ga0181506_134310623300019260PeatlandRLRFRGPQFLISAATGRGTRELVQAVMVFLEDQRRALEAHGPEAPAGDTAA
Ga0181514_145052223300019268PeatlandLRFRGPHFLISAATGRGTKELAQAVMGFLEEQRALEARGPEARPGDTAA
Ga0181512_140560613300019270PeatlandRRLRFRGPHFLVSAATGRGTKELAQAVMAFLEEQAREALAREAPAGDTAA
Ga0197907_1144993423300020069Corn, Switchgrass And Miscanthus RhizospherePHFLISAATGRGTKELAQAIMVFLEEQQAREAPAHESPAGDTAA
Ga0206352_1120894623300020078Corn, Switchgrass And Miscanthus RhizospherePHFLVSAATGRGTKELVQKIMVFLEEQQAHEAPGPESPAGDTAA
Ga0206354_1067909113300020081Corn, Switchgrass And Miscanthus RhizosphereLRFRGPHFLVSAATGRGTKELAQKIMSFLEEQQAHEARDLESPAGDTAA
Ga0242646_103498113300022502SoilRRLRFRGPHFLVSAATGRGTKELAQTIMGFLEEQAREALAREAPAGDTAA
Ga0242646_103647023300022502SoilFRGPHFLISAATGRGTQELAQAVMVFLEERRALEARGPEEPAGDTAA
Ga0242647_104414413300022505SoilHFLISAATGRGTKELAQAVMGFLEERRALEARGPEERPGDTAA
Ga0242647_104683413300022505SoilVSAATGRGTKELAQAIMGFLEEQQAREAHAREAPAGDTAA
Ga0222728_111486413300022508SoilPHFLISAATGRGTQELAQAIMVFLEEQRALEARGPEEPAGDTAA
Ga0242649_106659913300022509SoilRRLRFRGPHFLVSAATGRGTKEMAQAVMVFLEEQQARGVHAPEEPAEDTAV
Ga0242649_107822923300022509SoilVSAATGRGTKELAQAVMGFLEEQRVREAHAREAPAGDTAA
Ga0242651_104289223300022511SoilRRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0242651_104714423300022511SoilRLRFRGPHFLISAATGRGTPELAQAVMVFLEEQQARGAHAPEEPAGDTAA
Ga0242676_105181923300022512SoilRGPHFLVSAATGRGTKELAQAIMVFLEEQAAREALAREEPAGDTAA
Ga0242659_113820213300022522SoilRLRFRGPHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREEPAGDTAA
Ga0242663_109786213300022523SoilRLRFRGPHFLVSAATGRGTKELAQAIMVFLEEQAAREALAREEPAGDTVA
Ga0242663_113209523300022523SoilCYCGPHFLVSAATGRGTKELAQAVMVFLEEQAAREALAREAPAGDTAA
Ga0242664_115174913300022527SoilRRLRFRGPHFLISAATGRGTPELAQAVMVFLEEQQARGVHAPEEPAEDTAV
Ga0242668_112084023300022529SoilFLISAATSRGTKELAQAVMVFLEEQRAREARGPEEPAGDTAA
Ga0242668_114699223300022529SoilRFRGPHFLVSAATGRGTKELAQAIMVFLEEQQAREAHALVSPAGDTAA
Ga0242658_104090813300022530SoilGPHFLISAATGRGTKELAQAIMVFLEEQQAREAPAHASPAGDTAA
Ga0242658_121146913300022530SoilRLRFRGPHFLTSAATGRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0242660_124524123300022531SoilRLRFRGPHFLVSAATGRGTKELAQEVMAFLEEQDREARALAASAGDSAA
Ga0242662_1032653813300022533SoilPHFLVSAATGRGTKELAQAVMVFLEEQQARGVHAPEEPAGDTAA
Ga0242670_106638113300022708SoilARRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0242670_108465713300022708SoilISAATGRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0242653_111535223300022712SoilLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQAREVLAREAPAGDTAA
Ga0242673_113094413300022716SoilPHFLVSAATGRGTKELAQAVMVFLEEQQARGAHAPEEPAGDTAA
Ga0242661_109851613300022717SoilRLRFRGPHFLVSAATGRGTKELAQAVMTFLEEQQARGAHAPEEPAGDTAA
Ga0242675_109576823300022718SoilRLRFRGPHFLISAATSRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0242666_119468923300022721SoilRLRFRGPHFLVSAATGRGTKELAQAVMVFLEEQAREALAREAPAGDTAA
Ga0242657_122648113300022722SoilRLRFRGPHFLVSAATGRGTKEMAQAVMVFLEEQQARGVHAPEEPAGDTAA
Ga0242657_125533613300022722SoilRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0242665_1035185223300022724SoilLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAPEAPAGDTAA
Ga0242654_1038185513300022726SoilRRLRFRGPHFLVSAATGRGTRELTQKIMVFLEERQAREAHDLESPAGDTAA
Ga0242654_1043457613300022726SoilRLRFRGPHFLVSAETGRGTKELAQVVMVFLEEQQAREARDLEAPAGDTAA
Ga0247540_10426513300023542SoilHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0247514_12132613300023560SoilRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0247550_10497413300023660SoilQHFLISAATGRGTQELAQAVMVFLEEQRALEARGPEAPAGDTAA
Ga0247517_12100423300023689SoilFRGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0207700_1198509613300025928Corn, Switchgrass And Miscanthus RhizosphereRFRGPHFLVSAATGRGTKELAQKVMVFLEERQAREAHDLESPAGDTAA
Ga0208236_101184313300027066Forest SoilPQFLVSAATGRGTKELTQAIMGFLEEQRAREAHAREEPAGDTAA
Ga0209624_1011501733300027895Forest SoilARARDIARRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0222748_112242713300029701SoilRRLRFRGPHFLVSAATGRGTKELAQAVMVFLEEQQARGAHAPEEPAGDTAA
Ga0311355_1161737213300030580PalsaTGRGTKELAQAVMGFLEEQQAREAPAREAPAGDTAA
Ga0311356_1148895213300030617PalsaLRFRGPHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0265391_1025514723300030622SoilFYSFLLILVNCGPHFLVSAATGRGTKELAQAVMGFLEEQRAREALAREAPAGDTAA
Ga0307482_131123413300030730Hardwood Forest SoilFLVSAATGRGTKELAQAVMVFLEEQAAREALAREAPAGDTAA
Ga0265462_1217343113300030738SoilLRSLRFRGPHFLISGATGRGTKELMQAVMVFLEERDREARAREPSAEGTADAQQAGS
Ga0302311_1036503313300030739PalsaAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0265459_1421669213300030741SoilFISFNSLILISAATGRGTKELAQAVMVFLEERRALEARGPEEPAGDTAA
Ga0265731_10423513300030806SoilRRLRFRGPHFLISAATGRGTKELAQAVMGFLEEQRAREAHAREAPAGDTAA
Ga0265734_10626013300030812SoilRLRFRGPHFLISAATGRGTKELAQAVMGFLEEQRAREAHAREAPAGDTAA
Ga0265752_10925123300030832SoilGPHFLVSAATGQGTKELTQSVMAFLEEQRQAREALAREAPAGDTAA
Ga0265767_12029713300030836SoilRFRGPQFLISAATGRGTKELAQAIMVFLEERRALEARGPEEPAGDTAA
Ga0075388_1157870923300030848SoilLLLVYIFGYFFIFISAATGRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0265772_10736013300030886SoilLRFRGPQFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0265769_12070523300030888SoilRFRGPHFLISAATGRGTQELAQAVMVFLEERRALEARGPEEPAGDTAA
Ga0075391_1110811423300030934SoilWRDSFPSFFVCLISAATGRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0247549_10555813300030942SoilHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0265768_11625213300030963SoilPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREVPAGDTAA
Ga0075394_1192955123300030969SoilCPFCSFFLISAASGRGTKELAQAVMVFLEEQRALEARGPEEPAGDTAA
Ga0265774_10626913300031011SoilRLRFRGPHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0265754_103525823300031040SoilLVSAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0170834_10780139323300031057Forest SoilAATGRGTKELAQAIMGFLEEQAREALAREAPAGDTAA
Ga0170822_1360697923300031122Forest SoilLVSAATGRGTKELAQAIMGFLEEQAREALAREAPAGDTAA
Ga0170822_1414372013300031122Forest SoilTGRGTKELAQAIMGFLEEQAREALAREEPAGDTAA
Ga0310106_11673123300031634SoilSAATGRGTKELAQAIMGFLEEQAREARAREVPAGDTAA
Ga0310111_14109023300031667SoilGPHFLVSAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0310101_12838113300031690SoilPHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0310686_11094595013300031708SoilGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0247548_10782813300031814SoilRRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQAAREAHAREAPAGDTAA
Ga0316045_12558523300031815SoilVRRLRFRGQHFLISAATGRGTQELAQAVMVFLEEQRALEAHGPEAPAGDTAA
Ga0316045_12756913300031815SoilHFLVSAATGHGTKELAQAVMVFLEEQAREALAREAPAGDTAA
Ga0316042_12993913300031816SoilPHFLVSAATGRGTKELAQAIMGFLEEQAREARAREVPAGDTAA
Ga0316038_11635213300031868SoilRRLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQQAREALAREVPAGDTAA
Ga0316033_11277423300031872SoilRRLRFRGPHFLVSAATGRGTKELAQALMGFLEEQAREARAREVPAGDTAA
Ga0316039_11905413300031891SoilPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0335077_1156821413300033158SoilLRFRGPHFLISAATGQGTRELNEAVMRFLEEGERARRVAAEEREAAAVAEPAREPG


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