Sample 3300031690

Basic Information
IMG/M Taxon OID	3300031690 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0324291 \| Ga0310101
Sample Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	42935031
Sequencing Scaffolds	25
Novel Protein Genes	29
Associated Families	27

Dataset Contents

Total Genome Size

42935031

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	23
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium SCN 63-9	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium SCN 63-9

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Norway: Oslo

Coordinates

Lat. (^o)

59.9979

Long. (^o)

10.7895

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000218	Metagenome / Metatranscriptome	1552	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001380	Metagenome / Metatranscriptome	709	Y
F001418	Metagenome / Metatranscriptome	698	Y
F003050	Metagenome / Metatranscriptome	510	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003497	Metagenome / Metatranscriptome	483	Y
F005081	Metagenome / Metatranscriptome	412	Y
F006591	Metagenome / Metatranscriptome	369	Y
F010404	Metagenome / Metatranscriptome	304	Y
F010621	Metagenome / Metatranscriptome	301	Y
F011395	Metagenome / Metatranscriptome	291	Y
F014264	Metagenome / Metatranscriptome	264	Y
F017080	Metagenome / Metatranscriptome	242	N
F024793	Metagenome / Metatranscriptome	204	Y
F029355	Metagenome / Metatranscriptome	188	Y
F030999	Metagenome / Metatranscriptome	183	Y
F037019	Metagenome / Metatranscriptome	168	Y
F039646	Metagenome / Metatranscriptome	163	N
F040634	Metagenome / Metatranscriptome	161	N
F059538	Metagenome / Metatranscriptome	133	N
F076700	Metagenome / Metatranscriptome	117	N
F086415	Metagenome / Metatranscriptome	110	N
F089697	Metagenome / Metatranscriptome	108	N
F090908	Metagenome / Metatranscriptome	108	Y
F092391	Metagenome / Metatranscriptome	107	Y
F104140	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0310101_113629	Not Available	870	Open in IMG/M
Ga0310101_114750	Not Available	825	Open in IMG/M
Ga0310101_114932	Not Available	817	Open in IMG/M
Ga0310101_114941	Not Available	816	Open in IMG/M
Ga0310101_115330	Not Available	802	Open in IMG/M
Ga0310101_115453	Not Available	798	Open in IMG/M
Ga0310101_115554	All Organisms → cellular organisms → Eukaryota → Opisthokonta	793	Open in IMG/M
Ga0310101_115608	Not Available	791	Open in IMG/M
Ga0310101_115827	Not Available	783	Open in IMG/M
Ga0310101_117055	Not Available	740	Open in IMG/M
Ga0310101_118574	Not Available	694	Open in IMG/M
Ga0310101_122582	Not Available	600	Open in IMG/M
Ga0310101_123192	Not Available	589	Open in IMG/M
Ga0310101_123716	Not Available	580	Open in IMG/M
Ga0310101_123850	Not Available	577	Open in IMG/M
Ga0310101_123882	Not Available	577	Open in IMG/M
Ga0310101_124227	Not Available	571	Open in IMG/M
Ga0310101_124377	Not Available	568	Open in IMG/M
Ga0310101_124577	Not Available	565	Open in IMG/M
Ga0310101_124694	Not Available	563	Open in IMG/M
Ga0310101_124929	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium SCN 63-9	559	Open in IMG/M
Ga0310101_125229	Not Available	554	Open in IMG/M
Ga0310101_125614	Not Available	548	Open in IMG/M
Ga0310101_128235	Not Available	510	Open in IMG/M
Ga0310101_128381	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310101_110491	Ga0310101_1104911	F039646	DEICLSHALYYMDISQIARWCNSGSKKRIRALVHSHQHSHGELNRGEQEYWVSESGIVTQKNVDTGEPYSHPSVEGLFHQFTAKTKHGGVAWTVTRMGGDTYQFEFVSCKPEMCKEYVPLRFLKPETRVEWAFNDTVVRGFLGWTWMTLTQGDRKYQLVDCDLTDKLRRYIAGKPRNARMKSELMNYARRLTNKADIIAIHGGGAHEVLVGRMSDYVENAFYCDVRHELEVAMSYWRRNHVVTEALTTYYETGKMPLDVAKIQKAIKVGVKTLTSAAHIPALALGAGALATGGIGPAVLASSMAVTSLMAVGGVEVWSHYSDPPPKW
Ga0310101_113629	Ga0310101_1136292	F089697	VSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLAILVSSGSRPTILVPSGSRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPYAAPAPRLAPPPVCTGCFTLRLYRP
Ga0310101_114750	Ga0310101_1147501	F059538	LASQCLVNSVVQPLLRPSATPAARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVNYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0310101_114932	Ga0310101_1149321	F017080	LDESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNHRLSPAVVAAFSLRLLPLRLSSLRWLSPVCHTGGKLPTRIGCYAIQLYRF
Ga0310101_114941	Ga0310101_1149411	F006591	CRSLGAPPLQVGGRLLDASPRGNAELSVSWQDRRPDCSKRLLGEAFQRGSHGPCRGSAPHKVMRPLRHGLVTAVRQVGPRELPPERWPDGTGLASYPSSDI
Ga0310101_115330	Ga0310101_1153301	F086415	LRFSTPFHPRETLRSSRRPGPRPRAPLPTGVTLLWTSAPLADFCNLKQRAGTPNERSTLAREWGFRPATRRHQPMPVASARDTLPHRGPASLELHAPACARRVPLAWTGQMEGRSVRGKASRALLDDVARALLVAPRAPGSPVRLVMRSGGPRHSSPRPRFPFDASPRRATPSKEPGCLLPRRNPYASGGWLLRARLDRGLVTPPPERHCSETRAPLLPALQRLLLTRKALEPARPTVSNGAKPRWNDRSQRPSRLLRPNQLAGRCA
Ga0310101_115453	Ga0310101_1154532	F010621	LTWFAGRWRNHQPKRAEKPHSKSARGKAPDGPATRPETPLAVENGVGNPAAPVRVAPNAGTGKRVWRA
Ga0310101_115554	Ga0310101_1155541	F030999	MTNWSMIILGLVAISGVAWAENSYLVIVPKLFKIGTDNSVSVFIGAVSEPVEVRFELTMGKTRFECKATCKPGETRNATMALPWDMPVGAGELTIFGMGGVRFEEKRDVIIYDDSHVILVQTSASTYRPGETMEVRVVVTDDKLIPIESGEIDIEFYDAALKLVAEYPRFPIRLGMTETIRFPLAEHLNIGTWLISATIRNTTSSVQVLVARPITPSFDLKAIFQRFLLRTEKTLRGVIEMSSDCGEPIFGRALIAIGQITEQD
Ga0310101_115608	Ga0310101_1156082	F006591	QVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0310101_115827	Ga0310101_1158271	F076700	SLAVQPVLRPPATPVAALQLSLVPGSSGCAGTVAPTYVSALHSGSTSGQPSGSDRFRVLRLDRLQTSDSHRLFRSSDRPVVTCSTCVEPSFLRLGRQPTSDSHRGRPLARLAASSGLRLMLPLPLVWFRVQFAPVASPYVFTGREPLGLRLVAPSPAEPLMHSLFPPNLASTAKPSMSIPFPLALASSGIFQLNIFRLASAFALLVRPAIPLWLAPQVSPSVRAGGHPPVLTGCPLRQPCWRSTSGLRRLSLLPAFRQPT
Ga0310101_117055	Ga0310101_1170551	F001024	MRPATPLAVENGVGKLAANVRQMPARERESGELPTPNLSL
Ga0310101_118574	Ga0310101_1185741	F001418	REAGFTSSSGGVRAPSVNAKKELSGQERKRKLETAPSPVK
Ga0310101_120671	Ga0310101_1206711	F104140	MKSENKLDGASNFRAWKTRIDLILAKNKVLDIVKGKIVKPEFKE
Ga0310101_122582	Ga0310101_1225821	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKRDNFNLTLNRPL
Ga0310101_123192	Ga0310101_1231921	F014264	RTASLAGSSGSGTMIRRANVIRDYFGRGGERGKIGRLVRVSFSVWKRAEHYNPEGSRGPDGE
Ga0310101_123716	Ga0310101_1237161	F003050	MESAKAEIVAGEEKAVTSERSSFGMISCGAPESVEAVIAKAVAGEQTGKAYGAPKRGAQYGCMPVVSSAGNWIT
Ga0310101_123850	Ga0310101_1238501	F040634	MHGTEHRISDCRAYSPQAPRLLAYPASASSPLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSLVPAVYFAHSLAVRPARSAFWLPRQGLVSPSFRRHPRLKPVAFCTGPLCQLCHQVPLPFRSFRSLRIKALHGLATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0310101_123882	Ga0310101_1238821	F003497	GPLNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPELIRHFYLLEAFVSERPFARPQRLLSFENHRGEVKAPDLSLRRNSELFFQPVRPFAPTLDGVHHASGDVRCTRPVAVSRAQNSQTSIQLSLPVGTFIPSDRSAQSAAGSEKLTLVRGPFFLRSPKASITF
Ga0310101_124227	Ga0310101_1242271	F029355	QPCSPRACNRTEHRAPDRRAPCLSAPRQPVWRLPLQRFQARRSFYPKLDRSLVTAFPSPATAPAFADSIPGSMVLACYFAVSLAGFHARSVFRLRRRNWFAPIPAASTLQTRCTFAGNLIRLLSPSPLPSRSFSSLGIKAFNGRHRRPVRLPNPPDLRSLPAAISIARWRLRIIVHGSLRFRRLAVPQTS
Ga0310101_124377	Ga0310101_1243771	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYIFKAALEFQLARSASRSRPRLAFFRLTKLDHCESPVANFLS
Ga0310101_124577	Ga0310101_1245771	F001380	TVRFSDPSACGRSLCNRMLRENHWPLSAAAFQPAACHSNQPTFTGLNTLPEPESRCGLSLAHNDAFATIARSMFLACTFVSTSDTFANPFHSRLSRSVRFRGRSRAMSTPGTRYPRQSPTLQIHPRPPLPFGSSCENPSDQSVRPVPNPETRLTRRSIVSYSPPLPLSISPRINA
Ga0310101_124694	Ga0310101_1246941	F001380	TVRFSDPSACGRSLCGKMLRINSSSLSAAAFQPATGHSNQQILIGYSILPELESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSRLFRSVRFRGRTGATSTPGTRFPLHSSTPRILPRSPLPFRPSFENPLDQSVRPVPNPEARLTRRPIVPCSPPLPLAIPRRISARNSLRLSLTYRS
Ga0310101_124929	Ga0310101_1249291	F005081	MADCTILTITCDERFLSLLRKELHDQVGGGNPMIVASTIDEACSLLPMAHPRLIVVHWNRQGGRSEELNRLLWATTVLARGVPVLVIADRYRVDQATTFYRMGVADYISRTHHEDQLGRILDTYLHHRTASSPPVP
Ga0310101_125179	Ga0310101_1251791	F090908	MNLAAGPQEARPPAPGRRVMSTGVGVTLIAVGAILRFALAGGSPHGLNVHVVGVVLILAGFLCLLLSLLVRGGPRRLRSLVRQGRGGYYRLPGPNTRLERTRMAAAEDVAEVLGDERFYAPDAPGREEDDL
Ga0310101_125229	Ga0310101_1252291	F011395	MAAWKRAVVAGERKAVARCRFQPEQTRAPSKALISRSQKGRRGVEELSPVIRLQCDEPCMPASIG
Ga0310101_125614	Ga0310101_1256141	F003383	MIFSSMDQCIVSFCLSMKLRVTPLPHSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRTFGSAGDGPFELPRTSHAFSVAGFGKVPSCPGRYAFSCSACDEGRGSPLVLHLRLDRRWVIELPRCSHHSAVPTYRFSGCPKFRPFGIADDSLSGLPRTLNPPAPIDGYPSYPGSRIPRFASV
Ga0310101_128235	Ga0310101_1282351	F037019	PFQPACADQISGIEPILLATCSRAWARLGPLSVKRQGAAGSHRRFDRDSFRRDRSPNRVAWRFPDWTAVGLAFPSPFLGSAPLGIPLPEHSRLVGLDLTGVGSLSLRDRQITGGDSNPDCQFGVFAPEVSGSLVAGRRLSPCPHLFASHGLSLSESRSQLSGAFSYFAG
Ga0310101_128381	Ga0310101_1283811	F092391	PHFLISAATGRGTKELAQAVMGFLEEQQAREAHAREAPAGDTAA
Ga0310101_128758	Ga0310101_1287581	F000218	MESILSLGGLLVPIVAIIVGGAVAVTTMILRHQERVAKIERGIDPDAPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031690: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences