Sample 3300023560

Basic Information
IMG/M Taxon OID	3300023560 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290732 \| Ga0247514
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	34054502
Sequencing Scaffolds	32
Novel Protein Genes	33
Associated Families	32

Dataset Contents

Total Genome Size

34054502

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	27
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0431	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0431

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001418	Metagenome / Metatranscriptome	698	Y
F004473	Metagenome / Metatranscriptome	436	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F009017	Metagenome / Metatranscriptome	324	Y
F009043	Metagenome / Metatranscriptome	324	Y
F010305	Metagenome / Metatranscriptome	305	Y
F010621	Metagenome / Metatranscriptome	301	Y
F012024	Metagenome / Metatranscriptome	284	Y
F016913	Metagenome / Metatranscriptome	243	Y
F018868	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F025423	Metagenome / Metatranscriptome	201	Y
F026569	Metagenome / Metatranscriptome	197	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F055924	Metagenome / Metatranscriptome	138	Y
F058585	Metagenome / Metatranscriptome	134	N
F059538	Metagenome / Metatranscriptome	133	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F066975	Metagenome / Metatranscriptome	126	Y
F067292	Metagenome / Metatranscriptome	125	N
F068857	Metagenome / Metatranscriptome	124	Y
F071421	Metagenome / Metatranscriptome	122	N
F079408	Metagenome / Metatranscriptome	115	N
F086425	Metagenome / Metatranscriptome	110	Y
F089697	Metagenome / Metatranscriptome	108	N
F092391	Metagenome / Metatranscriptome	107	Y
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247514_102995	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1971	Open in IMG/M
Ga0247514_112752	Not Available	843	Open in IMG/M
Ga0247514_113154	Not Available	820	Open in IMG/M
Ga0247514_113160	Not Available	820	Open in IMG/M
Ga0247514_113283	Not Available	814	Open in IMG/M
Ga0247514_113316	Not Available	812	Open in IMG/M
Ga0247514_113455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	805	Open in IMG/M
Ga0247514_113827	Not Available	787	Open in IMG/M
Ga0247514_114024	Not Available	776	Open in IMG/M
Ga0247514_115129	Not Available	722	Open in IMG/M
Ga0247514_115528	Not Available	705	Open in IMG/M
Ga0247514_115570	Not Available	704	Open in IMG/M
Ga0247514_115594	Not Available	703	Open in IMG/M
Ga0247514_115894	Not Available	691	Open in IMG/M
Ga0247514_116056	All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	684	Open in IMG/M
Ga0247514_116383	Not Available	672	Open in IMG/M
Ga0247514_116993	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	649	Open in IMG/M
Ga0247514_117201	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	642	Open in IMG/M
Ga0247514_117918	Not Available	618	Open in IMG/M
Ga0247514_118715	Not Available	593	Open in IMG/M
Ga0247514_118888	Not Available	588	Open in IMG/M
Ga0247514_118925	Not Available	587	Open in IMG/M
Ga0247514_119141	Not Available	582	Open in IMG/M
Ga0247514_119974	Not Available	559	Open in IMG/M
Ga0247514_120288	Not Available	551	Open in IMG/M
Ga0247514_120628	Not Available	544	Open in IMG/M
Ga0247514_120693	Not Available	542	Open in IMG/M
Ga0247514_120918	Not Available	537	Open in IMG/M
Ga0247514_121189	Not Available	530	Open in IMG/M
Ga0247514_121326	Not Available	527	Open in IMG/M
Ga0247514_121465	Not Available	524	Open in IMG/M
Ga0247514_121947	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247514_102995	Ga0247514_1029951	F030619	FTVKELKVLCHNVRGSALHSKRWKNAPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGDGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGKSRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRLADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHTWTACEIFALPRDHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247514_112752	Ga0247514_1127521	F030305	VPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVS
Ga0247514_113154	Ga0247514_1131542	F007311	VPSCWPPHFAVAPVTDYSMLDAWLSLLHADCSALYIVRPVPVTDLTRCSTLSALLLPRIAPRLILCARAGRGSLRATDCSVVQHLELCTACGLLRTRYLALRVALGLLLARRFPLCAARGLLRARRLTLHAGLRIAPYADILRPCAVYGLLHVRH
Ga0247514_113160	Ga0247514_1131601	F067292	WRFNLDESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPHRRRTSDSHRLLRRPASPVSTHSTCVECSYFRLGLRCTPCFDWTLHRRLSRR
Ga0247514_113283	Ga0247514_1132831	F089697	ITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRCPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247514_113316	Ga0247514_1133162	F006591	GPWALTPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0247514_113455	Ga0247514_1134551	F018868	MRSTTSHAAKSGVGEHTARESEAPNVCEGKECVASTH
Ga0247514_113827	Ga0247514_1138272	F010305	LKRAEKPHSKFSGRKVLDGPATRPKTPLAVENGVGKLTAPEKGAPNVSMGKR
Ga0247514_114024	Ga0247514_1140241	F058585	HSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLDWLRLQFAPAASPFAFTDREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNRGLAPSLVTSGASSDPSAACASGFTLCPGWRSSSGSHRLSTPS
Ga0247514_115129	Ga0247514_1151291	F018933	RLGKSPRERTFYVRSPIGTRLPALAAIAARADCRRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247514_115528	Ga0247514_1155282	F060406	KPSMSIPCPPVRASSESASFNNFRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247514_115570	Ga0247514_1155701	F001418	ERRRAEAEFTSSSGGVRAPSVNAKKGLSGEECKEKLETTPSPVK
Ga0247514_115594	Ga0247514_1155941	F025423	VRLACLLHGNRFNGYRFNASRRAAASSETGPSARNGLSLARNGFRFRGLHSGVNGPGLLLRCLVCRFPCPFGLSALPPELVCPNPRRFHASDPLQSHLQTQPAALPISTPLQEFWLLRDQSVQWASLPSGPPSEFARFPLAPHSPSIARLRLRIIVRGSLRFRRLAVPQ
Ga0247514_115894	Ga0247514_1158941	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKLGNFNFTLNRPLG
Ga0247514_116056	Ga0247514_1160561	F016913	HKSTKIAVLGDDIAVGMHERGLVLKSWVDHCALAGMTLKAHERRYYCDLTFLSRFFVPCGDRNVMVPLIGKALCRFNARANRNQDVSDAQYMAGKSLSYAYEFRHVPYLRDRFLQRFRSTGVSIGCIKLHDLTWFSRQGVSGTTDVLQAAVDEPLVLSEDEFLEVVMAKYDMGLYDMDFLCDKLINEDVPYVFDDERYHLFAHEVE
Ga0247514_116383	Ga0247514_1163831	F004473	LNALIRRVEKPQGEWRSDGITRAPEIGADNGSKVKNSPGFGFETEPSGGAFGRTGSQRNTGVEAKAQVGSVDLVMVAKASLRASERPFRVSGSGRMRVLRTRFSH
Ga0247514_116993	Ga0247514_1169932	F065397	VQVRVFVSRLFSPDNLTLVMAITKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEGENERFSSAQC
Ga0247514_117201	Ga0247514_1172011	F066975	AVAVARQRKVRTPQSSVPDNVRDGRFKPVGRKVPQKTYRPGRKVQVRVKRCGKSAPPTQ
Ga0247514_117918	Ga0247514_1179181	F071421	GTAPGTQGSTEAAQQAIQLPPLSFPRDGPPQFHSSLTATMVCGMCLSGGGNLSPITPKSGYRFGPTPRNLAKVVAIGQPPTDPIAARWENQRDFS
Ga0247514_118715	Ga0247514_1187151	F068857	LRVLSLEDGNGLSAANTPGGVKNTIEDGSWRPNGLEEEFRISTKR
Ga0247514_118888	Ga0247514_1188881	F026569	MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLVRSPQPFHLKIRLRINVPDPLHFRRLAVP
Ga0247514_118925	Ga0247514_1189251	F009017	AVPSDPISSLAHHGHATVLSIAFRIAVRFACLLPGNRFSGYRFNAFRRAAAFYPKLDRSLVTAFSSPATASAFTDSIPRSMVLACYFAVSPAGFRARSVFPLHRRNWFAPIPAASTLQTRCTSTRKLIRPLSPSPLPFGSFTSLWIKAFNGRCCRPVRLPNPPDFRSLPATVLFLEEGHGSSFAIRYVFGGLLFL
Ga0247514_118978	Ga0247514_1189781	F010621	MNVSLPGWPAGDRNRQPKRAKRPHSKFSDRKALDGPAMRPATPLAVENGVGKPAAPAGAPNAGTGKRVWRAP
Ga0247514_119141	Ga0247514_1191411	F059538	ASQCLVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247514_119974	Ga0247514_1199741	F086425	MASACTDSVPGSMVLACYFAHSPAGLLTRSAFRLRRQSLVSPNVQLHPRLKPVAISTGLLCRLCRLPSLPFRNFRSLGINAPTGFATIRSAFRNCPIFVRSPQPFVLPFRLRIIVPDP
Ga0247514_120288	Ga0247514_1202881	F012024	MHGTEHRVSERRTLRLLAPREPVYPASASTLPDAPQPLCLPKTGPFARNGLSLTRVTSACADPIPGSKVLACYFAHSLAGLPARSAFWLRHQRLVCPSFRLHPRLKPVALFTGLLCRLCRPPPLPFRSFRSLGIKASTGFATVRSAFRNCPIFVRSPQPFH
Ga0247514_120628	Ga0247514_1206281	F000396	VPSDPISQLNSPPACNGTELCPQDCRAPSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCLSPGHHFEVEAPDLLLQHPTVSSSCPFRFRFPSALQFALARARSIPKSRCLTPARHSRPFLGSPLPFGAFRTPPDQSVQPDSRP
Ga0247514_120693	Ga0247514_1206931	F079408	MPVRPFGSAAGIGLPQLPLLPRFRPVAFPADELIRLLSPSPLPSRNFCSLGIKAFNGRRRRPVRLPISPDFRLLPATVLFLEEGYGS
Ga0247514_120918	Ga0247514_1209181	F102319	MIPGPITSWSKSLLRYKSKPKVMDVAAADRACLMKKKKDGPSRAMLRSILLSVLHV
Ga0247514_121189	Ga0247514_1211891	F009043	LSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARCS
Ga0247514_121326	Ga0247514_1213261	F092391	RLRFRGPHFLVSAATGRGTKELAQAVMGFLEEQAREALAREAPAGDTAA
Ga0247514_121465	Ga0247514_1214651	F055924	MEGPLVSDTTEVLSGAAPAPEESPIGHPAADPAGTAPRSANRNGGDLSKL
Ga0247514_121947	Ga0247514_1219471	F000396	VPSDPISQPNSPPACNGTELCIQDRRAPSLRLPAAFFQTQRINTLGLACQLSWLEPASRSGLSLSRNDCPFPGHHFEVKAPDLLLRHPTLHSSCPFGSRFPHAPRFAPARAGSLPKSRCLTPAWHFQPFLGSPLPVGVFRTLKDQSVQPDSWPESSPSERSRLPITPQHRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023560: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences