Sample 3300031634

Basic Information
IMG/M Taxon OID	3300031634 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0324296 \| Ga0310106
Sample Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	22482968
Sequencing Scaffolds	22
Novel Protein Genes	22
Associated Families	20

Dataset Contents

Total Genome Size

22482968

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Norway: Oslo

Coordinates

Lat. (^o)

59.9979

Long. (^o)

10.7895

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007847	Metagenome / Metatranscriptome	343	Y
F009688	Metagenome / Metatranscriptome	314	Y
F024939	Metagenome / Metatranscriptome	203	N
F025750	Metagenome / Metatranscriptome	200	Y
F029355	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F038098	Metagenome / Metatranscriptome	166	Y
F040634	Metagenome / Metatranscriptome	161	N
F050832	Metagenome / Metatranscriptome	144	Y
F058585	Metagenome / Metatranscriptome	134	N
F059538	Metagenome / Metatranscriptome	133	N
F062325	Metagenome / Metatranscriptome	130	Y
F065397	Metagenome / Metatranscriptome	127	Y
F068527	Metagenome / Metatranscriptome	124	N
F076700	Metagenome / Metatranscriptome	117	N
F080064	Metagenome / Metatranscriptome	115	Y
F092391	Metagenome / Metatranscriptome	107	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0310106_106655	Not Available	895	Open in IMG/M
Ga0310106_107395	Not Available	842	Open in IMG/M
Ga0310106_107621	Not Available	829	Open in IMG/M
Ga0310106_107636	Not Available	829	Open in IMG/M
Ga0310106_107852	Not Available	816	Open in IMG/M
Ga0310106_107878	Not Available	814	Open in IMG/M
Ga0310106_107885	Not Available	814	Open in IMG/M
Ga0310106_107961	Not Available	809	Open in IMG/M
Ga0310106_109240	Not Available	738	Open in IMG/M
Ga0310106_109405	Not Available	730	Open in IMG/M
Ga0310106_109477	Not Available	727	Open in IMG/M
Ga0310106_109679	Not Available	717	Open in IMG/M
Ga0310106_110725	Not Available	669	Open in IMG/M
Ga0310106_111915	Not Available	624	Open in IMG/M
Ga0310106_112291	Not Available	612	Open in IMG/M
Ga0310106_113172	Not Available	585	Open in IMG/M
Ga0310106_113722	Not Available	571	Open in IMG/M
Ga0310106_113833	Not Available	568	Open in IMG/M
Ga0310106_114221	Not Available	557	Open in IMG/M
Ga0310106_114680	Not Available	545	Open in IMG/M
Ga0310106_114907	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	540	Open in IMG/M
Ga0310106_116731	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310106_106655	Ga0310106_1066551	F030305	MPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTFLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVSLQ
Ga0310106_107395	Ga0310106_1073951	F024939	VAGPRTLRCAPVADYSSLDTWLSSLPADCSAFHFVHPMLLADLTRLPTLDARCRLRIAPFPAICVRAVQRITPCSTLRALHRSRIAPLSMLVRRASCGLLRSLRFAPRRHPRIDPPGLLRSDSSSFGNLMLRDGLRIAPYADTSHPRVDHGFLRVRHFKLRTVHRLLCARRLALVSDCGLLRSPHLAPWCCPRIAPCTTLGVLRLTRLAPLSTLITPHRI
Ga0310106_107621	Ga0310106_1076211	F007311	IPSCWPPHFAVAPVMDCSMLDAWHSLLHADCSALHFVCPVQTTDLTRCSTLSALRLLRIAPRSTPCARAGHGSLRATDCSVVQHLELCPACGLLRHRDLAFHAALGLLLVRRFPLSVAHGLLRARRLTLHAGLRIAPYADILRPRAVYGLLHFRH
Ga0310106_107636	Ga0310106_1076361	F068527	LNLDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLAACALCCCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAG
Ga0310106_107852	Ga0310106_1078521	F006591	PFAGPWALAPSQVGGRLLDASPRGNAELSVSWQDRRPDCSKRLLGEAFQRGSHGPCRGSAPHKVMRPLRHGLVTAVRQVGPRELPPERWPDGTGLASYPSSDI
Ga0310106_107878	Ga0310106_1078781	F058585	VSFGSTGCKPPTCVECSALPLVLRRSIWLAPDDPGFIGLAPDNPGSTWLAPDDPGFIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLTRLAASSGLRLVLPLPLGWLRFQFAPAASPSVLTGREPLGLRLAAPSPAEPLMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVY
Ga0310106_107885	Ga0310106_1078851	F009688	GQMGDGSAPSSLSRTGIGRPSGAAGFPTPFSTASGVFGLVAGPSNAFQPWSLSEAFELTWADGCATSLPTRSRHACNWIRVLTTCPGSATVFDGAFARSHGSRLFTLRLPYFCSPAVSFLISPTPGSLSRSLPSRRELPALCAPFVRLSTILFLAGSTFYF
Ga0310106_107961	Ga0310106_1079611	F059538	CLVNSVVQPLLRPSATPAARLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0310106_109240	Ga0310106_1092401	F007847	LKRAEKPHSKFSDRKALDGPATRPETPLAVENGVGNPA
Ga0310106_109405	Ga0310106_1094051	F050832	MVMEAVAADRTNLAEKKKDGPSRAMLRSILLSVLHV
Ga0310106_109477	Ga0310106_1094771	F009688	STASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTKSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTSTLFVCLSAFLIWRIQLFIFEPPESPTPC
Ga0310106_109679	Ga0310106_1096791	F038098	VGDQVSSSSFPSPGHPCGRPAPVFSTGIQDQGCHPRYLQRFRRSLSTSPFPARSSPARTSPPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPEPHGFRFGIRAIPAVPIRVVSFKLRVLPRGFYPIDSNQPALLTRPVRLAYRYAWRVATSSSTYPVRVA
Ga0310106_110725	Ga0310106_1107251	F058585	LWRFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPRGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTGCEPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSVIYKLKNF
Ga0310106_111915	Ga0310106_1119151	F080064	RCEQSLPEMEQSMTGRESQAMSAEQSAGKAGREVKGAERSELEAEGQVSGTK
Ga0310106_112291	Ga0310106_1122911	F025750	MEKADAHRSIDPWPAKTGGGEQRANVTPSSDAGFWPCMPVGERADRR
Ga0310106_113172	Ga0310106_1131721	F062325	MVPSDPISSLAHHGHATVLSIAFRIAVRFACLLPGDRFGGHRFKAFKRAAVSYPKRDRSLVTAFPSPATASAFADSIPGSMVPACYFAVSFTG
Ga0310106_113722	Ga0310106_1137221	F001380	LTVRFSDPSACGRSLCGKMLRINSSSLSAAAFQPATGHSNQQILIGYSILPELESRYGLSLAHNDAFATIARSMFLACTFVSPSKTFTNPFDPLLFRSVRFRGRTGATSTPGTRFPLPPSTLRILPRSPLPFRSSFENPSDQSVRPVPNPEARLTRRPIVPCSPLLPLSIPLRISARNSLRLSLTYRSVN
Ga0310106_113833	Ga0310106_1138331	F029355	QPCSPRACIRTEHRVPNRRALRLSAPRQPVWRLPLQRFQARRSFYPKLDRSLVTAFPSPATAPAFADSIPGSMVLACYFAVSLAGFHARSVFRLRRRNWFAPIPAASTLQTRCTFAGNLIRLLSPSPLPSRSFSSLGIKAFNGRHRRPVRLPNPPDLRSLPAAISIARWRLRIIVHGSLRFRRLAVPQT
Ga0310106_114221	Ga0310106_1142211	F076700	STGGQPSGSDRFRVLRLDRLQTSDSHRLFRTSVRPVVTRSICVEPSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLEWLRLQFAPAASPFAFTGREPLGLRLVAPSPAEPVMHSLFPPNLASTAKPSMSIPFPLALASSGIFQLNIFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRS
Ga0310106_114680	Ga0310106_1146801	F040634	VTGMHGTEHRISDCRAYSPQAPRLLVYPTSASPLLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSMVPAFYFAHSLAVRPARSAFWLRRQGLVGPNLRLHPRLKPVAFCTGPLCRLCRQIPLPFRSFRSLRINALPGFATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0310106_114907	Ga0310106_1149071	F065397	VQVRVFVSRLFSPDNLTLVMAIPKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEGDNERFSSAQC
Ga0310106_116731	Ga0310106_1167312	F092391	SAATGRGTKELAQAIMGFLEEQAREARAREVPAGDTAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031634: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences