3300001881: Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05

Overview

Basic Information

• IMG/M Taxon OID: 3300001881
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095509 | Gp0056883 | Ga0004713
• Sample Name: Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 198477119
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.992
  • Long. (^o): -106.0797
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049012	Metagenome / Metatranscriptome	147	Y
F079376	Metagenome / Metatranscriptome	116	Y
F089576	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24728J21555_1005963	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4000
JGI24728J21555_1010028	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	2842
JGI24728J21555_1061470	Not Available	627

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24728J21555_1005963	JGI24728J21555_10059635	F079376	MSDIGNTRQPGRPCVSFGVSRVCRTTEKGGRQTRHRGSDSLVVPVKVGNAAGGKEATYGSAE*
JGI24728J21555_1010028	JGI24728J21555_10100282	F089576	MFGLPDITVAVVGGVVLVILAALVYWGLTFRGHD*
JGI24728J21555_1061470	JGI24728J21555_10614701	F049012	QCQDKTKHVEKRFLLCXXXYLDEYXTKXRIVLSDSCDFDVFCHFIDFLVSGCIPSDRNDQIGVINLLREWESHFGIVDGFRFRLCCQEKDGIVVYNGDKYEVNIGCLLFHSEVFREFYKNSCGMVFNFDSSYSRESFEVFLDLIHNRISYPSVEKAGDVYDIXNCLHCDSLCQLLNDDSSERVLSLLIQNQSDSIDFSKYERSITQKI