3300025572: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025572
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061314 | Ga0207864
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 373368315
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004821	Metagenome / Metatranscriptome	422	Y
F009663	Metagenome / Metatranscriptome	314	Y
F010189	Metagenome / Metatranscriptome	307	Y
F013855	Metagenome / Metatranscriptome	267	Y
F022024	Metagenome / Metatranscriptome	216	Y
F025338	Metagenome / Metatranscriptome	202	Y
F036417	Metagenome / Metatranscriptome	170	Y
F041342	Metagenome	160	Y
F064527	Metagenome / Metatranscriptome	128	Y
F067312	Metagenome / Metatranscriptome	125	Y
F077823	Metagenome / Metatranscriptome	117	Y
F087914	Metagenome / Metatranscriptome	110	N
F098955	Metagenome / Metatranscriptome	103	Y
F102635	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207864_1000451	All Organisms → cellular organisms → Bacteria	57697
Ga0207864_1007855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6273
Ga0207864_1016978	All Organisms → cellular organisms → Bacteria → Proteobacteria	3073
Ga0207864_1017283	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3027
Ga0207864_1021562	All Organisms → cellular organisms → Bacteria → Proteobacteria	2436
Ga0207864_1031315	All Organisms → cellular organisms → Bacteria	1699
Ga0207864_1049905	All Organisms → cellular organisms → Bacteria → Proteobacteria	1089
Ga0207864_1063272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	882
Ga0207864_1066288	All Organisms → cellular organisms → Bacteria	847
Ga0207864_1069351	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	815
Ga0207864_1093830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	637
Ga0207864_1106529	Not Available	577
Ga0207864_1107581	Not Available	572
Ga0207864_1123137	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207864_1000451	Ga0207864_100045121	F098955	MDPSAIPVFLAGPFPVLHSANVLDREAEVQLDVGLIIGGLPTILAATSFPLDETWDRVEAALSSGDARLGVAGIPHQVESEIGETEVFPSAYIGLECANGERLILAHIRGPDRKQDPEAYAREVIAALLNGQTPAELGELIED
Ga0207864_1007855	Ga0207864_10078551	F004821	MSKRAGRTTFVSRGRLIGLVRDEHPAGTGQNHTSRLDNRDPGNAADEALFYRARLILGDAVPRPRR
Ga0207864_1016978	Ga0207864_10169781	F010189	MNAASWLEGLPAPAKWRELLLAHGPRIATWTLSLALGVQAAIIVTDLVGASRAPLVA
Ga0207864_1017283	Ga0207864_10172832	F036417	MVYPARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR
Ga0207864_1021562	Ga0207864_10215621	F102635	DETLMRAKADCVYHILRQIVEDVPAVQITTRLPENLTEEQLCLMTNAIKEAALKGIEVAMTHSVQVVMSSIYDLCTSKLQQAYSS
Ga0207864_1028931	Ga0207864_10289312	F025338	MNVPGAERTRQLITVGVGTVLTLVMGAVLIAGFRLATQMRANITALQTASVLQTYPTTLAQQLTSLRDRLEARAYAGQVLADVKATVESFDRDIQQLARSSLSGSQDLDQALLLWHQYQPVIQPVVAFNGQPYEDSDETGSSLSKEGRAHYSDVRRAQLFARENSPRLQSLLAAAVTQLQEAASAQAARLRALLSAGVLAAL
Ga0207864_1031315	Ga0207864_10313152	F098955	MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMIAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGAPEIFPSAYVGLECANGERLVLAHIRGLNREQES
Ga0207864_1049905	Ga0207864_10499052	F041342	DGLLPPRLRGVPARIADRLGLFEQHVERIRAWRSGERPSTGPDPRFFRSTVVGQWRELLR
Ga0207864_1063063	Ga0207864_10630632	F022024	AHWHATTDELDRAFEEIADRPDSDRPAIVVASVPSRGEPAVGYPAAYRFQRIVRAVPIDDDDIIAPGTSPAPPGLNFGVPGACIVGATAAPSGFALGHGSSNAAAILAGLLAGLWASPPYAKLSVDEFLARVVRGEMSRTWRRSKPGPRAPYLEGVPLADACPLATAQSSANVCRRPESHREPRP
Ga0207864_1063272	Ga0207864_10632721	F077823	VAKSVYAIGGKIGVTTNPGKFTRFKVSLPASEETSTAVA
Ga0207864_1066288	Ga0207864_10662882	F087914	MGEVIHVAFGTEREWEQTHAKTVDSLVAIGALFGDDETLMRAKADCVYHILRQIVEDVPAVQITTRLPENLTEEQLCLMT
Ga0207864_1069351	Ga0207864_10693512	F036417	MVFYARIPLRELVPTVLVRLATDDGEIVFRARWKRSPLELQRSILFCLRQGSMLWFEDEWGHALCFRPERVWGAMVDGR
Ga0207864_1093830	Ga0207864_10938301	F064527	MSTPRDPADRVRTLLLRADNVLKNEGDPADRARRAREALEEARAVAAGGGVDPRVAELIERRLAALEAGGPG
Ga0207864_1106529	Ga0207864_11065291	F009663	TESRETTQKLSFGPKEVDWACSLRKNKTQLRKHKVVHCMHPKTRSHNGYLQATESRETTQKLSFGPKEVDWASSLRKNKTQLPKHKVVHFMHGKTRSHNLYLPATESRETTQKLSFGPKEVDWACWLRKNKKQLRKHKVVHCMHPKTRSLNLYLPATESRETTQKLSFGPKEVDWACSLRKNKTQLRKHKVV
Ga0207864_1107581	Ga0207864_11075811	F013855	MGSIGCVRCENIRRDFVARTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAVDWADLLQRILLQLCGLNFCFNCNSSAXFEPSIVKQRNGPKSIQKQRNNTKHDFRFQWGWVSCIRCEKFGHDFVAXTFTLIAPVQ
Ga0207864_1123137	Ga0207864_11231371	F067312	KWAKLVQNFVPRSHVEIFGNERTXSTPLDSKLMFWCVLYYLGAFGTIWLPYKTRCKTGXSGAKLCAMKSCRNFSQQTTRSTPLGPNLMFRCISYYLGAFGTVCCVTTLSSKWAKLVQNFVPRSHVEIFGNERTRSTPLDSKLIFWCVLYYLGAFGTIWLPYKTRCKTGXSG