3300003330: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-R (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061320 | Ga0006571
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-R (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 157759216
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F005470	Metagenome / Metatranscriptome	399	Y
F020508	Metagenome / Metatranscriptome	223	Y
F022710	Metagenome / Metatranscriptome	213	Y
F034478	Metagenome / Metatranscriptome	174	Y
F036417	Metagenome / Metatranscriptome	170	Y
F072453	Metagenome / Metatranscriptome	121	Y
F077823	Metagenome / Metatranscriptome	117	Y
F097375	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006571J49611_1003883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2871
Ga0006571J49611_1008652	Not Available	962
Ga0006571J49611_1012033	Not Available	728
Ga0006571J49611_1017629	All Organisms → cellular organisms → Bacteria	904
Ga0006571J49611_1028458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	790
Ga0006571J49611_1038286	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	850
Ga0006571J49611_1051102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1649
Ga0006571J49611_1101981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	621
Ga0006571J49611_1108170	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	580

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006571J49611_1003883	Ga0006571J49611_10038834	F022710	VLELPILPLALAFIVVGVAAWLLGRRSAGARTVRLPRDYYVGLDHLINDRFDRAT
Ga0006571J49611_1008652	Ga0006571J49611_10086521	F034478	MDVEQGNLIQQDRPTIVRKVDLYGTYQEGKISFDHREEAEPVGNFLAGMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTVASANNKIGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGETKKFDFLKADGDNFPGYVVGFYGQHDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAANLKVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL*
Ga0006571J49611_1012033	Ga0006571J49611_10120331	F005470	MSVKLKKGGQVVCEFPKDMVPRSRLLTKLVDEFKAEEVDLEPAPGKDFSGPTVARVKEFLEKFEKGLPKNPKKPLLIFVTFNDWLDHNFDEKTREWLEDYLKPKSFYDLIELFNAAFYLQIDDLREIVAARIAHSIILERKAPEDFLRDFGIVTSYQEFFTPEEEKKFIDKEFINKNDFEGVAADDDEELLKEENK*
Ga0006571J49611_1017629	Ga0006571J49611_10176291	F072453	RPLRPRSEGFVEISGWTVIALAVVVGLNTLFIAGICIALFLVKARLDDALARAEPILNRATDTLARVEETTAHLQQKVDEVLDKTTHLVDQVSERVDTTTAIAEEAVTEPLIGAASLMAGINRGLRAYAERSHEKGDGKS*
Ga0006571J49611_1028458	Ga0006571J49611_10284581	F020508	PAMEVLFWCVVACAAVLLLFIGYRLGRWIATAQSQALLEQKERDLFTAQKGFKQLYETELANLRARNAELAQKNEHLAQKVEEYRKKAAGFGGLFSSGGKRADAMYALLLENEALEEALHRQNEKLSQERTDALKESLRNTGYRRVLMSQLLNDDRIKNYVAEIINDESRLPPPNSARQSLPHGEQE*
Ga0006571J49611_1038286	Ga0006571J49611_10382861	F001784	HHAGKAMGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
Ga0006571J49611_1051102	Ga0006571J49611_10511021	F077823	VVARSIYALGGRIGVSTQPGRYTRFKIALPATEEHASTAVA*
Ga0006571J49611_1101981	Ga0006571J49611_11019811	F097375	GVANATRRDEIQAMEQHQTAGPNPLCEVGKTHPRDRHRMRPVEGHPGVWECSKHGIFATVIPKERAEEIERGDPFPMHDGTEGIASRTGDERPGGIIIYYRPKVG*
Ga0006571J49611_1108170	Ga0006571J49611_11081702	F036417	LHLYPMVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR*