Metagenome / Metatranscriptome Family F073571

Overview

Basic Information

• Family ID: F073571
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 120
• Average Sequence Length: 44 residues
• Representative Sequence: MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
• Number of Associated Samples: 43
• Number of Associated Scaffolds: 120

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 6.67 %
• % of genes near scaffold ends (potentially truncated): 90.00 %
• % of genes from short scaffolds (< 2000 bps): 62.50 %
• Associated GOLD sequencing projects: 41
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (79.167 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine (17.500 % of family members)
• Environment Ontology (ENVO): Unclassified (27.500 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (25.833 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 34.88%
  Coil/Unstructured: 65.12%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF07228	SpoIIE	3.33
PF02518	HATPase_c	2.50
PF00342	PGI	1.67
PF01243	Putative_PNPOx	1.67
PF01734	Patatin	1.67
PF00749	tRNA-synt_1c	1.67
PF06750	DiS_P_DiS	1.67
PF02572	CobA_CobO_BtuR	1.67
PF09853	DUF2080	1.67
PF06974	WS_DGAT_C	1.67
PF02423	OCD_Mu_crystall	1.67
PF07702	UTRA	1.67
PF00850	Hist_deacetyl	1.67
PF00994	MoCF_biosynth	1.67
PF12833	HTH_18	0.83
PF08264	Anticodon_1	0.83
PF07732	Cu-oxidase_3	0.83
PF13669	Glyoxalase_4	0.83
PF13511	DUF4124	0.83
PF13450	NAD_binding_8	0.83
PF13424	TPR_12	0.83
PF01022	HTH_5	0.83
PF07947	YhhN	0.83
PF08735	DUF1786	0.83
PF12724	Flavodoxin_5	0.83
PF03992	ABM	0.83
PF01963	TraB_PrgY_gumN	0.83
PF01761	DHQ_synthase	0.83
PF00440	TetR_N	0.83
PF02737	3HCDH_N	0.83
PF00710	Asparaginase	0.83
PF13414	TPR_11	0.83
PF13275	S4_2	0.83
PF01875	Memo	0.83
PF05973	Gp49	0.83
PF02146	SIR2	0.83
PF00069	Pkinase	0.83
PF05099	TerB	0.83
PF01066	CDP-OH_P_transf	0.83
PF00701	DHDPS	0.83
PF03950	tRNA-synt_1c_C	0.83
PF03692	CxxCxxCC	0.83
PF13247	Fer4_11	0.83
PF02441	Flavoprotein	0.83
PF04228	Zn_peptidase	0.83
PF00534	Glycos_transf_1	0.83
PF00581	Rhodanese	0.83
PF12832	MFS_1_like	0.83
PF00970	FAD_binding_6	0.83
PF01891	CbiM	0.83
PF00216	Bac_DNA_binding	0.83
PF01266	DAO	0.83
PF01553	Acyltransferase	0.83
PF02310	B12-binding	0.83
PF08359	TetR_C_4	0.83
PF03934	T2SSK	0.83
PF01740	STAS	0.83
PF14622	Ribonucleas_3_3	0.83
PF03054	tRNA_Me_trans	0.83
PF02080	TrkA_C	0.83
PF01636	APH	0.83
PF07022	Phage_CI_repr	0.83
PF01979	Amidohydro_1	0.83
PF13421	Band_7_1	0.83
PF01925	TauE	0.83
PF01926	MMR_HSR1	0.83
PF09505	Dimeth_Pyl	0.83
PF02769	AIRS_C	0.83
PF01207	Dus	0.83
PF00462	Glutaredoxin	0.83
PF01255	Prenyltransf	0.83
PF00210	Ferritin	0.83
PF07973	tRNA_SAD	0.83
PF02190	LON_substr_bdg	0.83
PF14833	NAD_binding_11	0.83
PF02780	Transketolase_C	0.83
PF00012	HSP70	0.83
PF08669	GCV_T_C	0.83
PF02566	OsmC	0.83
PF13549	ATP-grasp_5	0.83
PF04055	Radical_SAM	0.83
PF13336	AcetylCoA_hyd_C	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1989	Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase	Cell motility [N]	5.00
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.33
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.33
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.50
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.67
COG2109	ATP:corrinoid adenosyltransferase	Coenzyme transport and metabolism [H]	1.67
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	1.67
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.67
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG0252	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D	Translation, ribosomal structure and biogenesis [J]	1.67
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.67
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	1.67
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	0.83
COG3714	Uncharacterized membrane protein YhhN	Function unknown [S]	0.83
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.83
COG4012	Uncharacterized protein, DUF1786 family, actin-like ATPase superfamily	General function prediction only [R]	0.83
COG3156	Type II secretory pathway, component PulK	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG2321	Predicted metalloprotease	General function prediction only [R]	0.83
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.83
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.83
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.83
COG1916	Pheromone shutdown protein TraB, contains GTxH motif (function unknown)	Function unknown [S]	0.83
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.83
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.83
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.83
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.83
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.83
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.83
COG0310	ABC-type Co2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.83
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.83
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.83
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.83
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.83
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.83
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.83
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.83
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.83
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.17 %
Unclassified	root	N/A	20.83 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.17 %
Unclassified	root	N/A	20.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.17 %
Unclassified	root	N/A	20.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.83 %
Unclassified	root	N/A	20.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.83 %

Level 5

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	52.50 %
Unclassified	root	N/A	20.83 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	52.50 %
Unclassified	root	N/A	20.83 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.83 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.83 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	16.67 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	6.67 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.83 %
Coxiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae	0.83 %
Spirochaetaceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae	0.83 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	14.17 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.83 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.83 %
Coxiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → Coxiella	0.83 %
Spirochaeta	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta	0.83 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	2.50 %
Desulfamplus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus	0.83 %
Desulfatitalea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea	0.83 %
unclassified Anaerolineaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae	0.83 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.83 %
unclassified Coxiella (in: g-proteobacteria)	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → Coxiella → unclassified Coxiella (in: g-proteobacteria)	0.83 %
Desulfatibacillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	0.83 %
unclassified Spirochaeta	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta	0.83 %
Desulfonema	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema	0.83 %
Desulfobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium	0.83 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	1.67 %
Desulfamplus magnetovallimortis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus → Desulfamplus magnetovallimortis	0.83 %
Coxiella sp. DG_40	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → Coxiella → unclassified Coxiella (in: g-proteobacteria) → Coxiella sp. DG_40	0.83 %
Anaerolineaceae bacterium 4572_32.1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium 4572_32.1	0.83 %
unclassified Desulfatitalea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → unclassified Desulfatitalea	0.83 %
Desulfonema limicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	0.83 %
Spirochaeta sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta → Spirochaeta sp.	0.83 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.83 %
Desulfatibacillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	0.83 %
Desulfobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium	0.83 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	1.67 %
Desulfatitalea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → unclassified Desulfatitalea → Desulfatitalea sp.	0.83 %
Desulfamplus magnetovallimortis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus → Desulfamplus magnetovallimortis	0.83 %
Coxiella sp. DG_40	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → Coxiella → unclassified Coxiella (in: g-proteobacteria) → Coxiella sp. DG_40	0.83 %
Anaerolineaceae bacterium 4572_32.1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium 4572_32.1	0.83 %
Desulfonema limicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	0.83 %
Spirochaeta sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta → Spirochaeta sp.	0.83 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.83 %
Desulfatibacillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	0.83 %
Desulfobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000242|TDF_OR_ARG05_123mDRAFT_1009013	Not Available	2640
3300000242|TDF_OR_ARG05_123mDRAFT_1019309	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1647
3300000242|TDF_OR_ARG05_123mDRAFT_1027459	All Organisms → cellular organisms → Bacteria	1281
3300000242|TDF_OR_ARG05_123mDRAFT_1049341	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	852
3300000242|TDF_OR_ARG05_123mDRAFT_1071678	Not Available	672
3300000242|TDF_OR_ARG05_123mDRAFT_1092604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	578
3300001685|JGI24024J18818_10125712	All Organisms → cellular organisms → Bacteria	789
3300001685|JGI24024J18818_10184175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	597
3300001685|JGI24024J18818_10204979	Not Available	554
3300004097|Ga0055584_100016297	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	7300
3300004097|Ga0055584_101564630	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	683
3300005589|Ga0070729_10555834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	624
3300006467|Ga0099972_10017816	All Organisms → cellular organisms → Bacteria → Proteobacteria	3166
3300006467|Ga0099972_10105177	All Organisms → cellular organisms → Bacteria	970
3300006467|Ga0099972_11097118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1653
3300006467|Ga0099972_12014354	All Organisms → cellular organisms → Bacteria	659
3300006467|Ga0099972_12338942	Not Available	722
3300006467|Ga0099972_12849106	Not Available	1644
3300006467|Ga0099972_12852744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → Coxiella → unclassified Coxiella (in: g-proteobacteria) → Coxiella sp. DG_40	1947
3300006467|Ga0099972_12907091	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2208
3300006467|Ga0099972_12921877	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1032
3300006467|Ga0099972_13174753	All Organisms → cellular organisms → Bacteria → Proteobacteria	1971
3300006467|Ga0099972_13463487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1579
3300007511|Ga0105000_1178787	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1228
3300009008|Ga0115649_1051797	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	5499
3300009008|Ga0115649_1432287	All Organisms → cellular organisms → Bacteria	665
3300009035|Ga0102958_1112924	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	857
3300009128|Ga0118727_1032045	All Organisms → cellular organisms → Bacteria	6404
3300009128|Ga0118727_1392444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	742
3300009138|Ga0102959_1285932	Not Available	553
3300009138|Ga0102959_1302612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	541
3300009374|Ga0118720_1017309	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	5307
3300010330|Ga0136651_10011539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	4847
3300010330|Ga0136651_10050811	All Organisms → cellular organisms → Bacteria	2232
3300010330|Ga0136651_10054646	All Organisms → cellular organisms → Bacteria → Proteobacteria	2145
3300010330|Ga0136651_10092413	Not Available	1598
3300010330|Ga0136651_10215462	Not Available	973
3300010330|Ga0136651_10430061	Not Available	648
3300010330|Ga0136651_10458260	Not Available	624
3300010330|Ga0136651_10530838	Not Available	571
3300010330|Ga0136651_10591084	Not Available	536
3300010392|Ga0118731_100163913	Not Available	623
3300010392|Ga0118731_103382792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6558
3300010392|Ga0118731_103710708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1005
3300010392|Ga0118731_104566165	All Organisms → cellular organisms → Bacteria	4000
3300010392|Ga0118731_105247940	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	4825
3300010392|Ga0118731_112080119	Not Available	545
3300010392|Ga0118731_112228566	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	24674
3300010392|Ga0118731_112372991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	4490
3300010392|Ga0118731_112883733	Not Available	3339
3300010392|Ga0118731_115208661	Not Available	502
3300010430|Ga0118733_100011204	All Organisms → cellular organisms → Bacteria	22870
3300010430|Ga0118733_100021160	All Organisms → cellular organisms → Bacteria → Proteobacteria	15143
3300010430|Ga0118733_100046437	All Organisms → cellular organisms → Bacteria	9195
3300010430|Ga0118733_100047260	All Organisms → cellular organisms → Bacteria	9093
3300010430|Ga0118733_100054832	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	8327
3300010430|Ga0118733_100204671	All Organisms → cellular organisms → Bacteria	3915
3300010430|Ga0118733_100360628	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2878
3300010430|Ga0118733_100378168	All Organisms → cellular organisms → Bacteria	2805
3300010430|Ga0118733_100649724	All Organisms → cellular organisms → Bacteria → Proteobacteria	2100
3300013099|Ga0164315_10001995	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15530
3300013099|Ga0164315_10017359	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5679
3300013099|Ga0164315_10027304	All Organisms → cellular organisms → Bacteria	4541
3300013099|Ga0164315_10031148	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4248
3300013099|Ga0164315_10059604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3053
3300013099|Ga0164315_10110625	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2225
3300013099|Ga0164315_11397354	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551
3300013101|Ga0164313_10005319	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11397
3300013101|Ga0164313_10034520	Not Available	4281
3300013101|Ga0164313_10054216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3374
3300013101|Ga0164313_10476089	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1039
3300013101|Ga0164313_10478765	Not Available	1036
3300013101|Ga0164313_10743417	All Organisms → cellular organisms → Bacteria	807
3300013119|Ga0171655_1004196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18594
3300014913|Ga0164310_10359834	Not Available	861
3300014914|Ga0164311_10033310	All Organisms → cellular organisms → Bacteria → Proteobacteria	3050
3300014914|Ga0164311_10038506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2837
3300014914|Ga0164311_10091839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1814
3300014914|Ga0164311_10208508	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1157
3300014914|Ga0164311_10368595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	835
3300017990|Ga0180436_10258442	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1264
3300017992|Ga0180435_10412747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1121
3300017992|Ga0180435_10627672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	903
3300021337|Ga0210341_1546893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	511
3300021346|Ga0210335_1638920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	822
3300021496|Ga0190343_1020650	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	926
3300021496|Ga0190343_1022612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus → Desulfamplus magnetovallimortis	879
3300021506|Ga0190358_1120892	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511
3300021514|Ga0190293_1000646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12400
3300021514|Ga0190293_1002564	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6249
3300021514|Ga0190293_1002922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5802
3300021514|Ga0190293_1003546	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5283
3300021514|Ga0190293_1023418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium 4572_32.1	1953
3300022391|Ga0210374_1070065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	673
(restricted) 3300022913|Ga0233404_10030928	Not Available	1215
(restricted) 3300022938|Ga0233409_10265258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	593
(restricted) 3300022938|Ga0233409_10362958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	511
(restricted) 3300023089|Ga0233408_10133057	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	556
(restricted) 3300023210|Ga0233412_10267619	Not Available	751
(restricted) 3300023276|Ga0233410_10088159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	955
3300027834|Ga0209344_10090209	All Organisms → cellular organisms → Bacteria → Proteobacteria	1676
3300027834|Ga0209344_10177516	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1094
3300027834|Ga0209344_10377370	All Organisms → cellular organisms → Bacteria	663
3300027834|Ga0209344_10429555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	606
3300027852|Ga0209345_10543983	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium	659
3300027852|Ga0209345_10807679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	502
3300027858|Ga0209013_10018030	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	5485
3300027858|Ga0209013_10050706	Not Available	2911
3300027858|Ga0209013_10059502	All Organisms → cellular organisms → Bacteria	2638
(restricted) 3300028045|Ga0233414_10608438	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta → Spirochaeta sp.	518
3300032136|Ga0316201_11623645	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → unclassified Desulfatitalea → Desulfatitalea sp.	534
3300032258|Ga0316191_10447426	All Organisms → cellular organisms → Bacteria	940
3300032260|Ga0316192_10214169	Not Available	1336
3300032260|Ga0316192_10758713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	653
3300032260|Ga0316192_10846617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	614
3300032262|Ga0316194_10720466	Not Available	628
3300032262|Ga0316194_10981035	Not Available	532
3300032263|Ga0316195_10008670	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5016
3300032276|Ga0316188_10094333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1457
3300033429|Ga0316193_10800735	All Organisms → cellular organisms → Bacteria	750

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.50%
Terrestrial	Environmental → Terrestrial	2.50%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	95.00%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.50%
Soil	Environmental → Terrestrial → Soil	2.50%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	40.00%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	30.00%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	10.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.50%
Inlet	Environmental → Aquatic → Marine → Inlet	5.83%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.50%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.67%

Subtype

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	34.17%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	23.33%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	10.00%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.50%
Microbial Mats	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats	6.67%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.83%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.67%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	17.50%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	15.83%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	10.00%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	8.33%
Marine Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent	7.50%
Hydrothermal Vent Microbial Mat	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat	6.67%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.83%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	5.83%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	5.00%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine	5.00%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	3.33%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.50%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	2.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.50%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.67%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000242	Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m	Environmental
3300001685	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2	Environmental
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental
3300005589	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2	Environmental
3300006467	Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935	Environmental
3300007511	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b	Environmental
3300009008	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um	Environmental
3300009035	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D1_MG	Environmental
3300009128	Combined Assembly of Gp0137084, Gp0137083	Environmental
3300009138	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D2_MG	Environmental
3300009374	Combined Assembly of Gp0137041, Gp0137043	Environmental
3300010330	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG	Environmental
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300013099	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm	Environmental
3300013101	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm	Environmental
3300013119	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate a	Environmental
3300014913	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm	Environmental
3300014914	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm	Environmental
3300017990	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG	Environmental
3300017992	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG	Environmental
3300021337	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.425 (Metagenome Metatranscriptome)	Environmental
3300021346	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.374 (Metagenome Metatranscriptome)	Environmental
3300021496	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-1-2_MG	Environmental
3300021506	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-1-2_MG	Environmental
3300021514	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-0-1_MG	Environmental
3300022391	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.765 (Metagenome Metatranscriptome)	Environmental
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental
3300022938 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG	Environmental
3300023089 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG	Environmental
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental
3300023276 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MG	Environmental
3300027834	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 (SPAdes)	Environmental
3300027852	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 (SPAdes)	Environmental
3300027858	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)	Environmental
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental
3300032258	Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm	Environmental
3300032260	Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow	Environmental
3300032262	Coastal sediment microbial communities from Maine, United States - Cross River sediment 1	Environmental
3300032263	Coastal sediment microbial communities from Maine, United States - Phippsburg sediment 1	Environmental
3300032276	Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1	Environmental
3300033429	Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
TDF_OR_ARG05_123mDRAFT_10090133	3300000242	Marine	MVFSRPAGVGRHDLTPQNSSLFLRVKSAARLGRTRQSLFLDGHXXG
TDF_OR_ARG05_123mDRAFT_10193092	3300000242	Marine	MLNSAHPQMVFFRNIGVGRPDLTPQNSTLFLRVKSVVRLDLTQKSSFLNGH*
TDF_OR_ARG05_123mDRAFT_10274592	3300000242	Marine	SDHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLT*
TDF_OR_ARG05_123mDRAFT_10493411	3300000242	Marine	RDIGVGRHDLTPQNSTLLLRIKSVVRLDLTQKSSFLDGH*
TDF_OR_ARG05_123mDRAFT_10716781	3300000242	Marine	MVFFRDIGVGRHDLTPQNSTLLLRVKSVIRLDLTQKSSFLDGH*
TDF_OR_ARG05_123mDRAFT_10926041	3300000242	Marine	AHPQMVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDGH*
JGI24024J18818_101257122	3300001685	Marine	PQMVFFRDIGVGRHDLTPQNSTLLLRVKSIVRLDLT*
JGI24024J18818_101841752	3300001685	Marine	MVFXRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
JGI24024J18818_102049791	3300001685	Marine	MLRGSLFCAHPQMVFFRDICVGRHDLTPQNSTLLLRVKSVVRLDLTKKSS
Ga0055584_1000162976	3300004097	Pelagic Marine	RDIGVGRHDLTPQNSTLLLQVKSVARLDITQKSSFLDGH*
Ga0055584_1015646302	3300004097	Pelagic Marine	QMVFFRDIGVGRHDLTPQNSSLLFRVKSVVRLDFTQKSSFLDGH*
Ga0070729_105558341	3300005589	Marine Sediment	SAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDEH*
Ga0099972_100178161	3300006467	Marine	SVHPQMVFIRDIGVGRQDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH*
Ga0099972_101051771	3300006467	Marine	MVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLMQKSSFLDGH*
Ga0099972_110971181	3300006467	Marine	QMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDEH*
Ga0099972_120143542	3300006467	Marine	MVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLMQKSS
Ga0099972_123389422	3300006467	Marine	MVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDG
Ga0099972_128491062	3300006467	Marine	RDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH*
Ga0099972_128527441	3300006467	Marine	PQMVFFRDIGVGRHDLTPQNSTLLLRVKSVARLDLTQKSSFLDGH*
Ga0099972_129070911	3300006467	Marine	QMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH*
Ga0099972_129218772	3300006467	Marine	FFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDGH*
Ga0099972_131747533	3300006467	Marine	LVSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSFLDGH*
Ga0099972_134634873	3300006467	Marine	FRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH*
Ga0105000_11787872	3300007511	Marine	MVFFRDIGVGRHDLTPQNSTLFLRVKSDPLLDLTK
Ga0115649_10517971	3300009008	Marine	MVFFRDIGVGRHDLTPQNSTLFLRVKSDVLLDLTQKSLFLDGH*
Ga0115649_14322871	3300009008	Marine	MVFFRDIGVGRHDLNPQNSSLFLRVKSDTLLDLTKKSLFLDGHYLNEEIISSSAAL
Ga0102958_11129242	3300009035	Soil	MLRGSLFCAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLGGH*
Ga0118727_10320455	3300009128	Marine	MVFFRDIGVGRHDLTPQNSSLFLRVKSDTLLDLTKKSLFLDGHYLNEEIISSSAAL
Ga0118727_13924442	3300009128	Marine	MRSILFSAHPEMIFSRPAGVGRHDLTPQNSTLFLRVKSDARLGRTRKFLFLDGHSFGSAAETACK
Ga0102959_12859321	3300009138	Soil	AHPQMVFFRDIGVGRHDLTPQNSTLFLRVKSVVRLDLTEKSSFLDGH*
Ga0102959_13026122	3300009138	Soil	FFGEVCLCMLRGSLFCAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVFRLDLTKKSSFLDGH*
Ga0118720_10173095	3300009374	Marine	MTFLRDIGVGRHDLTPQNSTLFLRVKSAVRLDLTQKFLFLDGHQLKQLV*
Ga0136651_100115397	3300010330	Marine Hydrothermal Vent	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKK
Ga0136651_100508111	3300010330	Marine Hydrothermal Vent	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFL
Ga0136651_100546463	3300010330	Marine Hydrothermal Vent	GVTSAQPQMVFFRDIGVGHHDLIPQNSTLLLRIKSVVRLDLTQKSSFLDGH*
Ga0136651_100924131	3300010330	Marine Hydrothermal Vent	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKFSFLDGH*
Ga0136651_102154621	3300010330	Marine Hydrothermal Vent	FFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGQ*
Ga0136651_104300611	3300010330	Marine Hydrothermal Vent	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKS
Ga0136651_104582602	3300010330	Marine Hydrothermal Vent	SSTSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0136651_105308382	3300010330	Marine Hydrothermal Vent	FFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0136651_105910841	3300010330	Marine Hydrothermal Vent	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLNGH*
Ga0118731_1001639131	3300010392	Marine	MDKTLTSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKS
Ga0118731_1033827924	3300010392	Marine	MDTPFPLTSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVARLDLTQKSSFLDGH*
Ga0118731_1037107081	3300010392	Marine	MVFFRDIGVGRHDLTPQNSTLLLRVKSVARLDLTQKSSFL
Ga0118731_1045661656	3300010392	Marine	RDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDGH*
Ga0118731_1052479406	3300010392	Marine	FRDIGVGRHDLTPQNSTLLLRVKSVARLDLTQKSSFLDGH*
Ga0118731_1120801191	3300010392	Marine	FFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH*
Ga0118731_1122285661	3300010392	Marine	QMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSFLDRH*
Ga0118731_1123729915	3300010392	Marine	AHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKPSFLDGH*
Ga0118731_1128837332	3300010392	Marine	QMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSFLDGH*
Ga0118731_1152086611	3300010392	Marine	PQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLT*
Ga0118733_1000112041	3300010430	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLT*
Ga0118733_10002116010	3300010430	Marine Sediment	MVFFRDIGVGRHDLTFQNSSLLLRVKSVVRLDLTQKSSFLDGH*
Ga0118733_1000464379	3300010430	Marine Sediment	CPAVTLVSAHPQMVFFRDIGLGRQDLTPQNSTLLLRIKSAVRLDLTQKSSFLDGH*
Ga0118733_1000472601	3300010430	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFL
Ga0118733_1000548321	3300010430	Marine Sediment	DIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDGH*
Ga0118733_1002046711	3300010430	Marine Sediment	VVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLD
Ga0118733_1003606283	3300010430	Marine Sediment	VFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDEH*
Ga0118733_1003781684	3300010430	Marine Sediment	MVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQ
Ga0118733_1006497244	3300010430	Marine Sediment	FRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKPSFLDGH*
Ga0164315_1000199512	3300013099	Marine Sediment	FRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGHYL*
Ga0164315_100173591	3300013099	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDIT*
Ga0164315_100273041	3300013099	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKPSFLDGH*
Ga0164315_100311481	3300013099	Marine Sediment	QMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLNGH*
Ga0164315_100596041	3300013099	Marine Sediment	MLRSSLFCAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH
Ga0164315_101106253	3300013099	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKS
Ga0164315_113973541	3300013099	Marine Sediment	VFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKTSFLDGHYLIA*
Ga0164313_100053194	3300013101	Marine Sediment	MVFFRDIGVGHHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDRHYLA*
Ga0164313_100345204	3300013101	Marine Sediment	FRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0164313_100542161	3300013101	Marine Sediment	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSF
Ga0164313_104760893	3300013101	Marine Sediment	RDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0164313_104787652	3300013101	Marine Sediment	AHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLNGH*
Ga0164313_107434173	3300013101	Marine Sediment	PQMVFFRDIGVGRHDLNPQNSTLFLRVKSGARLDLTQKSSFLDGH*
Ga0171655_10041961	3300013119	Marine	MVFFRDIGVGRHDLTPQNRTLFLRVKSGLLLDLTKKSLFLE
Ga0164310_103598341	3300014913	Marine Sediment	TSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0164311_100333101	3300014914	Marine Sediment	RDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGHYL*
Ga0164311_100385063	3300014914	Marine Sediment	MVFFRDIGVGHHDLIPQNSTLLLRIKSVVRLDLTQKSSFLDGH*
Ga0164311_100918391	3300014914	Marine Sediment	DIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH*
Ga0164311_102085081	3300014914	Marine Sediment	PQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLELTKKSSFLEGH*
Ga0164311_103685953	3300014914	Marine Sediment	FRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGQ*
Ga0180436_102584421	3300017990	Hypersaline Lake Sediment	MVFLRDFGVGRHDLTPQNSPLFLRVKSVVRLELTQKS
Ga0180435_104127471	3300017992	Hypersaline Lake Sediment	FRVGGVGCHDLNPRNSELFLRFKSGIRLAHTKKSSFLDGH
Ga0180435_106276721	3300017992	Hypersaline Lake Sediment	MALLRDFGVGRHDLNPQNSPLFLRVKSAARLACSEPV
Ga0210341_15468931	3300021337	Estuarine	MVFFRDIGVGRQDLTPQNSTLLLRVKSVVRLDLTQKPSFLGGHYLVNK
Ga0210335_16389202	3300021346	Estuarine	MVFFRDIGVGRQDLTPQNSTLLLRVKSVVRLDLTQKSSFLGGHYLVN
Ga0190343_10206501	3300021496	Hydrothermal Vent Microbial Mat	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQK
Ga0190343_10226121	3300021496	Hydrothermal Vent Microbial Mat	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
Ga0190358_11208921	3300021506	Hydrothermal Vent Microbial Mat	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLD
Ga0190293_100064612	3300021514	Hydrothermal Vent Microbial Mat	HPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTKKSSFLDGH
Ga0190293_10025641	3300021514	Hydrothermal Vent Microbial Mat	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGY
Ga0190293_10029222	3300021514	Hydrothermal Vent Microbial Mat	MVFFRDIGVGHHDLTPQNSTLFLRVKSVVRLDLTQKSSFLDRHYLA
Ga0190293_10035463	3300021514	Hydrothermal Vent Microbial Mat	MVFFRDIGVGHHDLIPQNSTLLLRIKSVVRLDLTQKSSFLDGH
Ga0190293_10234181	3300021514	Hydrothermal Vent Microbial Mat	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSF
Ga0210374_10700651	3300022391	Estuarine	MVFFRDIGVGRQDLTPQNSTLLLRVKSVVRLDLTQKSSFL
(restricted) Ga0233404_100309283	3300022913	Seawater	NSAHPQIVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
(restricted) Ga0233409_102652581	3300022938	Seawater	FFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
(restricted) Ga0233409_103629581	3300022938	Seawater	DIGVGHHDLTPQNSTLLLRIKSVVRLDLSKKSSFLDGH
(restricted) Ga0233408_101330571	3300023089	Seawater	QMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLT
(restricted) Ga0233412_102676191	3300023210	Seawater	MVFFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQK
(restricted) Ga0233410_100881591	3300023276	Seawater	FFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGHYLTKRLTA
Ga0209344_100902091	3300027834	Marine	VKMVVSAHPQMVFFRDIGVRRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGQ
Ga0209344_101775162	3300027834	Marine	WLNSAHPQMVFFRDIGVGRQDLTPQNSTLLLRVKSVVRLDLT
Ga0209344_103773701	3300027834	Marine	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQ
Ga0209344_104295551	3300027834	Marine	MGSLDSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFL
Ga0209345_105439831	3300027852	Marine	MVFSRDIGVGRHDLTPQNSTLLLRVKSVARLDLTQKSSFLD
Ga0209345_108076791	3300027852	Marine	VFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTEKSSFLDGHQLRFLVHDSAIDNG
Ga0209013_100180301	3300027858	Marine	VFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
Ga0209013_100507061	3300027858	Marine	MLRGSLFCAHPQMVFFRDICVGRHDLTPQNSTLLLRVKSVVRLDLT
Ga0209013_100595021	3300027858	Marine	GSLFCAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKFVVRLDLTQKSSFLGGH
(restricted) Ga0233414_106084382	3300028045	Seawater	MVFFRDIGVGRHDLTPQNSTLLLRVESVVRLDLTSKS
Ga0316201_116236452	3300032136	Worm Burrow	MVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSF
Ga0316191_104474262	3300032258	Worm Burrow	MLNSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSFLDGHYYGGNQ
Ga0316192_102141691	3300032260	Worm Burrow	SAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSAVRLDLTQKSSFLDGHYYGGNQ
Ga0316192_107587132	3300032260	Worm Burrow	SRPAGVGRHDLTPQNSALFLRVKSDARLVRTQKSLFLDGHELMKLDADS
Ga0316192_108466171	3300032260	Worm Burrow	MVFFRDIGVGRQDLTPQNSTLLLRVKSVVRLDLTQKSS
Ga0316194_107204661	3300032262	Sediment	MVFSRPAGVERHDLIPQNSTLFLRVKSTARLGRTQKSLFL
Ga0316194_109810352	3300032262	Sediment	QAFPVEVLFSAHPQMVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLT
Ga0316195_100086702	3300032263	Sediment	MVFLLDSGVGCHDLTPQNSRLFLRVKSVTRLGLEQKSSFLDSFYLEV
Ga0316188_100943331	3300032276	Worm Burrow	MVFLRDFCVGRHDLTPQNSLLFLRVKSDTRLELTQKSSFLDEHSIKPIHK
Ga0316193_108007351	3300033429	Sediment	FFRDIGVGRHDLTPQNSSLLLRVKSVVRLDLTQKSSFLDGH