3300013119: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate a

Overview

Basic Information

• IMG/M Taxon OID: 3300013119
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137049 | Ga0171655
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate a
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 704260948
• Sequencing Scaffolds: 36
• Novel Protein Genes: 37
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 314

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F002129	Metagenome / Metatranscriptome	591	Y
F012463	Metagenome	280	Y
F012507	Metagenome	280	Y
F021532	Metagenome	218	Y
F024649	Metagenome	205	Y
F026851	Metagenome	196	Y
F027682	Metagenome	194	Y
F034620	Metagenome	174	Y
F034952	Metagenome	173	Y
F037424	Metagenome	168	Y
F037729	Metagenome / Metatranscriptome	167	Y
F037764	Metagenome	167	Y
F039402	Metagenome / Metatranscriptome	164	Y
F042974	Metagenome	157	Y
F043978	Metagenome	155	Y
F044014	Metagenome	155	Y
F044592	Metagenome	154	Y
F058066	Metagenome	135	Y
F060045	Metagenome	133	Y
F061915	Metagenome	131	Y
F064639	Metagenome	128	Y
F072238	Metagenome	121	N
F072251	Metagenome	121	Y
F072364	Metagenome / Metatranscriptome	121	N
F073571	Metagenome / Metatranscriptome	120	N
F074578	Metagenome / Metatranscriptome	119	Y
F074743	Metagenome / Metatranscriptome	119	Y
F074757	Metagenome	119	Y
F083739	Metagenome	112	Y
F089552	Metagenome	109	Y
F098203	Metagenome / Metatranscriptome	104	Y
F101902	Metagenome	102	Y
F102126	Metagenome / Metatranscriptome	102	N
F103071	Metagenome	101	N
F104964	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0171655_1004196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18594
Ga0171655_1015570	Not Available	6679
Ga0171655_1016991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	6231
Ga0171655_1024143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4755
Ga0171655_1032383	All Organisms → Viruses → Predicted Viral	3793
Ga0171655_1032417	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3791
Ga0171655_1036974	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3431
Ga0171655_1039959	All Organisms → Viruses → Predicted Viral	3230
Ga0171655_1051069	All Organisms → cellular organisms → Bacteria	2672
Ga0171655_1079260	All Organisms → Viruses → Predicted Viral	1883
Ga0171655_1083859	Not Available	1801
Ga0171655_1084950	All Organisms → Viruses → Predicted Viral	1783
Ga0171655_1090272	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1694
Ga0171655_1093016	Not Available	1654
Ga0171655_1093699	All Organisms → Viruses → Predicted Viral	1644
Ga0171655_1102296	All Organisms → Viruses → Predicted Viral	1532
Ga0171655_1111090	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1435
Ga0171655_1116082	Not Available	1385
Ga0171655_1123015	All Organisms → Viruses → Predicted Viral	1323
Ga0171655_1137262	All Organisms → cellular organisms → Bacteria → FCB group	1216
Ga0171655_1164348	All Organisms → Viruses → Predicted Viral	1061
Ga0171655_1177127	Not Available	1002
Ga0171655_1186947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	961
Ga0171655_1192326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	940
Ga0171655_1198382	All Organisms → cellular organisms → Bacteria → PVC group	916
Ga0171655_1206855	Not Available	885
Ga0171655_1207690	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	882
Ga0171655_1209861	Not Available	874
Ga0171655_1236670	Not Available	782
Ga0171655_1238485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	775
Ga0171655_1240675	Not Available	768
Ga0171655_1251349	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	729
Ga0171655_1261105	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	691
Ga0171655_1268730	Not Available	658
Ga0171655_1270338	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	652
Ga0171655_1273015	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	641

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171655_1004196	Ga0171655_10041961	F073571	MVFFRDIGVGRHDLTPQNRTLFLRVKSGLLLDLTKKSLFLE
Ga0171655_1015570	Ga0171655_101557014	F034620	CKRKFFDNYNIDWYYGDTNHGATIYCLENDLKYLHLGPYYDNPNWETEDTLHTYYYKDKPFLTHLKGGFSENKMSSKDFEEEFNKYLQELNNAK*
Ga0171655_1016991	Ga0171655_101699112	F074743	MIDLANPEKRGRLLKAIKNSREALEKHRRVRKLMVEHYCGSWYDTTTPQDDGKILVNLMNQTARIYTVVLAANNPQVLVSTPRTETLPFARRFEVNLNKLISDMCLDKTFRSIVLDAFFCLGCGVVMMRDTDTRFHGLLESEEDVWLDPGEPWLNRVSLDDLIVDMPAKELSKMRYCGHRYRADYEKVMDEPGYNKKVKDKLTPTS
Ga0171655_1024143	Ga0171655_10241431	F043978	MISFIIPFSTIEKDKFLNLNEGFEYSDSANVVYATIKTIKNINTLKCEKEILLVDNSHTWPEMELPNVRVVKGWQALPLKELEKIPEFMNHRDIQLSLDNLGNDTMWASIAFHLGTQEAKGEYVVLQHNDTFY
Ga0171655_1032383	Ga0171655_10323833	F044592	VKVGDLVKYQDSIGIVIGPCKKRWAEPADVWVLWNGKHKPTIENGDFMELVNASR*
Ga0171655_1032417	Ga0171655_10324171	F060045	MIFNYSKPIRVQASVSMWKNLVFVFVNATWVVPLVVLAAKKTTVMRTNVSAVKC
Ga0171655_1036974	Ga0171655_10369742	F072238	MFNIGVKSYDIRDFFDESFVKEYKEVVIEYRNILDTNLPTTTNTGNSTKSLELIKWIEERTNKDFSYLYEPVWIYDGQKEYRYDYKFVMAAYEYLDSINIDENWNLVSQLSKDLIPNFSSLSLMYSPPESKTHKYYFMTDKINEVCLKKVIEEFPYMCNSLDDIQWNTNEWIGHMIAMPKGAFMSFHRDNTDDRPFTLLNYLNIDRTREDGGCFRYFIHKDYDVEDKESLDWSKYPDYLYYESVPQEDVENVKSLRYKYHNPPNKTPEYLESIDKFKNYNKYDIVANYTTVNILLHKNHKTKEEDKKYFVLETPPSSDYTGEQGIPHLVTKNKSDEVRYTLYRRVVWKEYLNELSRSVVWKDIREIK*
Ga0171655_1039959	Ga0171655_10399591	F037424	QYMKRTKIDLATGEKVKNKVAKAERMKNVTCGYCQLRGHTRRICEVVKRDKLVFIEESRRVRAGALADARETGIGVGSMIPIRSHGYNAAEEWGTHTTLRYVKRVDWHTVTAARAGLWVYHVDARKLAAANQHRWTSRDKILKMEENFKEARDYAELTHEPTPTASLIPSLDPPDGWLDCEPSTIDVAAAFPTTGNKYEKQRGHDYAWPSGVTAEVIRDLGLEEHWKGRF*
Ga0171655_1051069	Ga0171655_10510692	F064639	MVGKTAIKDNSLKDSKISSKKLTYNLKNKLLKQKKIDHYFLEKLTFISLEELITLKLLVSTEALKGKMYNFPFLKYASDICKESIIRFAISKANNRREVYLILGAKKAEIIKYIKEYDLMEEYNYDSRAKKSN*
Ga0171655_1079260	Ga0171655_10792604	F061915	MTTLPLESAAYACEGVITAVAVLSQVLEVQRVAPEDPQTPDAVNLMLEAYAIACAEGGDIAEA*
Ga0171655_1083859	Ga0171655_10838591	F026851	MTQQQIRQLLKDPANMTPLEQAEVGRMKQAYFSAVAQETAAFISAKEAYEDAREFMDVKDPGEREVLMQLLKNMRDCERNMTIIATELE
Ga0171655_1084950	Ga0171655_10849501	F044014	NLMNEDYKPRFSFEITEEQKFRADKLLDTYGLRKAIFGRILDDVLDIIEEYGGMAIGVMMKGKPREIIPSIKGVEEVGKK*
Ga0171655_1090272	Ga0171655_10902721	F072251	MKLLMENWRKFLKEGITDVVYHYTAGVEKAAKILEENRFMASGGFTKEVEAELGKGKLYYFSTARTPANAYTGNYPQGAIFKLDGRALSQKYKGVPVDYWADPKRGRSSKKAANVDEPGSIEGFEAEDRILLDEPYIDDADTYIDEIHFAIPIYKKEKDMFSGKIERRARSSIAWWQLDGLQ
Ga0171655_1093016	Ga0171655_10930161	F074578	MVITPFRSITIGADATQDLWSLMAAATNKLKLHGWEITSDSTSAVALEVALLRLSAVGSGGAAATEVKLDTDDGAITGSVRTGDTTPGTPGDILQGFAWEQLGPLGVIYTPEMRPVIEVSTGIALVCDTS
Ga0171655_1093699	Ga0171655_10936995	F037729	MSQEDFKRRISRLEESQETLEDSLNQLNTTIALLNQTVETMAKREEKRQQFMDRTILFLVGGVISAFIAWVVRGGLGQ*
Ga0171655_1102296	Ga0171655_11022961	F034952	NFQNHAVQEERKVSTYDDEGVETIGPETETHDRTVDKTYWGWPEAPDAEVDKYHVRYL*
Ga0171655_1111090	Ga0171655_11110901	F083739	MSENQKLKISDEIINNLKEKYKEYPLFQIIDTVNGDTFIIRGSNWDEFSRVGNVQPGKENRVPLNMVKAFVVWPEIDQQDIEYNRSGKWQPGRIVALAEQIQEVLGYNKAFAVKKL*
Ga0171655_1111090	Ga0171655_11110902	F072364	MADLIEDLGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKTYEIDFEIKEILFNSAINVAQTAKNTAFLALFEDFTDIRNAVIIIMYPGAAILRSKTFTGVEITDHEGGFSDSEDAEPIGIKCSGFATRATGLF*
Ga0171655_1116082	Ga0171655_11160821	F058066	LAEQRWDNVLREIIFGLKCAKTIQDYDYKVGRGGYVELKKLTKSSKRSFELIGKHLFNLWD*
Ga0171655_1123015	Ga0171655_11230153	F012507	MWTDKLKIGDLIYCRRDNKPAILLDKEETARAKYGDIANKRWRFKLHIDGEQGWLDEVRLRTQYKLP*
Ga0171655_1137262	Ga0171655_11372622	F027682	INLTSRRTIMELTKRRLKEIIAEEMNHLAETGDLNMITEAEKKAFAIILEKLTPTQLKDLGLKRI*
Ga0171655_1164348	Ga0171655_11643482	F102126	MKGRGKGEEVRRGQDAERFVNDPLYKEAFDVTKEHLIEMLLQTKISEEVERDRIYITIKSLDLIDQHIKSVLETGKLAEGQHEF
Ga0171655_1177127	Ga0171655_11771271	F000388	MKVIKVTKEFFQIEDEKVYFFEPLEKEISVEDMQKIVDANEKL
Ga0171655_1186947	Ga0171655_11869472	F042974	MKLLLENWRKFVTEDWRDTSWKTDDGKVSIREVLDYLGDETVDIN
Ga0171655_1192326	Ga0171655_11923263	F101902	MKVGNLVKRRDDHIHRGIVLMVGPNETAIDHGKTVAKVQWFDGDLTFEFIRLLEVVSESR
Ga0171655_1198382	Ga0171655_11983821	F089552	AEMAREITRLSEYRRIVKSFDVFELPPELRSLIMEAIESNAWDWFEQCDGCTCVSELHWPTKYFPPCLRHDFDWIRGKGDWKASRRFYRLQRAYGVPMWRSALRAGAVTAVWYGWSRWKRKRSRR*
Ga0171655_1206855	Ga0171655_12068551	F024649	MRKNDLVQFTQGTKRLSEDRWRYSDSDATVDGFRNLSAEERELWITRHTEAVKAGRTTWHDSAGESVLAPYTTLVSFPLNGTFIVLKARTTAIRSHRKVTGLASIACPSTGVVGYVKRALLEKVGD*
Ga0171655_1207690	Ga0171655_12076902	F021532	MNKKEVIILKDKWNPGAYEVPAPRALEMVQVGKDEFREVPFPLSLDSQKRLLELIYNRRSGIITRQELINVLYNQED
Ga0171655_1209861	Ga0171655_12098611	F039402	MPLTDYSDLEKEIADAPEPKILPRGTEVKARIIAVRGGISEKNSCQWYTPVFDVPDDPMVIEFNDFFWDLADAQGKIDEKQFQRALNSFRNFAAAFGIDYSRPFSWEDDLPGLEGWLIVGVRK
Ga0171655_1236670	Ga0171655_12366701	F002129	MNLTPVNNYLTVRTVEDTETEESGILLPQDYRAVESPFAVVEVVNCSGENGTLWGAGLQLVVEAHMLRDIQHNGE
Ga0171655_1238485	Ga0171655_12384853	F074757	MKDGDLVTLSSYCLQRSDMWAWREKIWKQKKPLVGLVVRIKENPRIYHWTSPNEKTHYYIQWVQGGGPGSRFGRSFHNSDGYFLRNDLKFVKKGVFK*
Ga0171655_1240675	Ga0171655_12406751	F103071	FADFDFFVGAKESNLTKKIKKLNTTKPVQTSSMFGNGAQLADLTGYTRARISQFEKVGTIKREKNRLFNLEKSAEAIGRPIQLTEEQKADSGPIDFAEWRNLKMKEDALISQTERRVIQGDLLDRDAVMTEIGAAFHSAKTKLLTIPTSVAGIVATETDASVIKEIIEGLIREALAEIGAAAALFGSARDNETTAEAHG*
Ga0171655_1251349	Ga0171655_12513491	F037424	QYMKRTKIDLATGEKVKNKVAKAERMKNVTCGYCQLRGHTRRVCEVVKRDKLVFIEESRRVRAGALENARETGIGVGSMIPIRVSGYHGPDQEWGSYTSLRYVKSVDWNALTAARAGLWVYHVEAGKLASANQSRWTSRDKILRLQENFKEVRDHAELTHEPEPVASLIPSLDPPDGWLDCEPSTIDVAKQFPTTGGKYDKQRKHDYNWPSGETAQVIRDLGLEEHWKGRF*
Ga0171655_1261105	Ga0171655_12611053	F012463	VKIGDIVKLIAEPNVDWMFNYLEATFQVLDFPTETGVELKMIGSVPDWIWIIGKDNLKVA
Ga0171655_1268730	Ga0171655_12687302	F104964	MPPYKTVSKAWLVFPEKRLWAVLFDDRKLREEITEMIKDGAKINAIKALKLYAEENFLGCSLREIKNVIDKYNYRYIITTKIERLRERIEEWCSENGYEKMENQKEIKDKSGQYTYKYSDWEYIDDAYGNMINDGDWLPHQK
Ga0171655_1270338	Ga0171655_12703381	F037764	IGNNRFDTKVTIKSGGGEVTGSFSVDGAIKEGGLSIPTLMEKMVVDENSTTFLNFVPINAEDGEVIITD*
Ga0171655_1273015	Ga0171655_12730152	F098203	FKNSGEWKTQLDSPDYFLNLLRYGGPFLMDFMHQTDASVILDRFYPCELVYASAFERSTDLDAITWMDDKFAEVNGKFILCLRKDYSGLVDDQYPDQLPPEMLKVLDKHYRTFYETTTCECLILETDDMDLNKQVKKIKMFLGISKDLNAEDFCAYT*