Sample 3300021496

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300021496

3300021496: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-1-2_MG

Overview

Basic Information
IMG/M Taxon OID	3300021496 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215268 \| Ga0190343
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-1-2_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	136289761
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus → Desulfamplus magnetovallimortis	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F008189	Metagenome / Metatranscriptome	337	Y
F008223	Metagenome / Metatranscriptome	337	Y
F009962	Metagenome / Metatranscriptome	310	Y
F018541	Metagenome / Metatranscriptome	234	Y
F051941	Metagenome / Metatranscriptome	143	N
F053219	Metagenome / Metatranscriptome	141	Y
F055007	Metagenome / Metatranscriptome	139	Y
F057908	Metagenome	135	Y
F065792	Metagenome / Metatranscriptome	127	N
F073567	Metagenome / Metatranscriptome	120	Y
F073571	Metagenome / Metatranscriptome	120	N
F079928	Metagenome / Metatranscriptome	115	N
F082710	Metagenome / Metatranscriptome	113	N
F092070	Metagenome / Metatranscriptome	107	Y
F097365	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190343_1015116	All Organisms → Viruses → Predicted Viral	1117	Open in IMG/M
Ga0190343_1018633	Not Available	983	Open in IMG/M
Ga0190343_1018690	Not Available	981	Open in IMG/M
Ga0190343_1020650	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	926	Open in IMG/M
Ga0190343_1022043	Not Available	892	Open in IMG/M
Ga0190343_1022612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfamplus → Desulfamplus magnetovallimortis	879	Open in IMG/M
Ga0190343_1023853	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	852	Open in IMG/M
Ga0190343_1034571	Not Available	692	Open in IMG/M
Ga0190343_1035859	Not Available	678	Open in IMG/M
Ga0190343_1035905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	677	Open in IMG/M
Ga0190343_1043219	Not Available	612	Open in IMG/M
Ga0190343_1044340	Not Available	603	Open in IMG/M
Ga0190343_1044534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	602	Open in IMG/M
Ga0190343_1046004	Not Available	591	Open in IMG/M
Ga0190343_1051925	Not Available	553	Open in IMG/M
Ga0190343_1058616	Not Available	519	Open in IMG/M
Ga0190343_1061789	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190343_1015116	Ga0190343_10151162	F003492	MAELLTDEIIIEKLNEDGIMEEPDAPWLLEYIYENYGSKLDTTSDYIDDNYTLKIYSESTYDSYDIYWCTHEQRPYVSQDGYYYEDYSDWSDRALDELTSGSDVWIENHIWDDMEYDFNYRLAEWWQEIYEDLFEEAKDELLDTGEYTIKEHDE
Ga0190343_1018633	Ga0190343_10186332	F057908	MEVRTVLERKDGIKMVIIPKKSDIKKGNKVLVTSNLRLINKFLDEEEK
Ga0190343_1018690	Ga0190343_10186902	F065792	AIPVAPSDTINIPGPRVRVSAASTATTPDGTPNQLIDANANFVTTYNADGSILNEGVSRGMVVYNMFATIASSTNSPLVATIVEVVNNTTLLLSANIFPFAGGTAVSAYKIYDGNDIASPGAQIYVGTAGNLYVETIDGDLVFIEDVPVGEVLPVVVQKVLVGAAAAGGQPNTLTTAGKLTAFI
Ga0190343_1020650	Ga0190343_10206501	F073571	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQK
Ga0190343_1022043	Ga0190343_10220432	F008189	MDYQDELKNIHEGGSFWKPKAGQFKVKSLSELEPTNPYVKKIEGQDDEVHEQMKILLLIEGEEKTWTFGKGKTPASTYGQLVELAVKNENKLTDIEFSIVVKNDGTKNDYTIVS
Ga0190343_1022612	Ga0190343_10226121	F073571	MVFFRDIGVGRHDLTPQNSTLLLRVKSVVRLDLTQKSSFLDGH
Ga0190343_1023853	Ga0190343_10238531	F079928	MTKIPTLYDKLKPRVRAKLKENEGKYSSSVRQVIAKLENTYFVQDLTVGELRRLHLFSDTDYVNQTALSIIWGDEIFDDYEGND
Ga0190343_1034571	Ga0190343_10345712	F051941	PTDSHAIINAFYVNNTDPFSSIFVDVRLDRGPGRPYVASTTTLFNVELASNQYLNLLTGPLVLEGGDKLVFTTSTSGRVQGTIAAMQVNREDQETTPTGSV
Ga0190343_1035859	Ga0190343_10358592	F053219	MKYAIFDMDDTLCTLQYRKYKATKSGSNKIDFKILFDSKLVKHDLPQGHVVELAEILSMFNTKIIIMTARPYYMEEATKQWLKDHRVPYFKLITKQKNKVFQKSSIWKESKLQELLQNINIEQIVLSIDDNKDNQAMFESYGIPVFDPLLQ
Ga0190343_1035905	Ga0190343_10359052	F018541	MRSFWVDFPLNTEQYSKLNLKWRRRQNFYEIRNPQPELRIRNFCTFGGDDYMVISLEARGDINEYANALKVMDK
Ga0190343_1043219	Ga0190343_10432191	F092070	NFQMVSNPWVESRIYEIGNIVYHPVVIDDPTTTGEDQVLVWWRANIRTTQGVFDTSEWDIIGGVGSGSISVSGSNGFGKININSTLPTGALQNGSNALMKATVGDDTFNLIAGQGMQLQYNLASKSIVLINSLASNPGEANLGENIGQGVTHQDVYAGKSGVNLQFRGFDATNTTGTALSISTNNVQDNIVYNFNEAKVNLANL
Ga0190343_1044340	Ga0190343_10443402	F055007	MANCAHCNKQFTCGCQKASLGNGIVVCKSCKAKAEAKLNTSSDLNRELARQQIQDLRNR
Ga0190343_1044534	Ga0190343_10445341	F097365	MVNSSDWQVMKQQAFDAFTQNGRMSVHELEQIVNIGCADGDFDEQERAVLINVISNLTRADMNDAMWLKIDELIHKFDLRDDSEAFIEHLEDEDDLESP
Ga0190343_1046004	Ga0190343_10460042	F082710	YGVSESKATAIIAEFKEKHGSLSHMYLYEDGYITDLANILIRHMKAKHMSREQIISNLKSNVNLMVLSSHTIPEGILDEMFQSVESTININELALPNISTMKKIVGGTKYDGDDNSAFKASFFKGDDDNSDDMSFITNKKTKGKIF
Ga0190343_1051925	Ga0190343_10519251	F009962	MSTLQFMGRDELVPRLIAQLGGNKKFAYALLKKRGDMNADGKLTAKGEKRNQMTAEERAFDRAGESPHTH
Ga0190343_1058616	Ga0190343_10586161	F073567	MNNLTNTQLKEIKSLYEMISLGWHYTNHPMYTEFMNHHNNLPDYNE
Ga0190343_1061789	Ga0190343_10617891	F008223	KPHQPSPTEELGKILDRFTTATIMGIDREDLGRYPARQHKVMAFHFGAIKYLAEQYELDETQTLGVFVTFIDKYFNMPISETGSISERLQGFLDNDDQRAYLDAGMDVFIRWHEQDERRAPLELGEMLKSE

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