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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F070883 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 122 |
| Average Sequence Length | 49 residues |
| Representative Sequence | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 122 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 20.49 % |
| % of genes near scaffold ends (potentially truncated) | 56.56 % |
| % of genes from short scaffolds (< 2000 bps) | 81.15 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (57.377 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (18.852 % of family members) |
| Environment Ontology (ENVO) | Unclassified (57.377 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (93.443 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 62.26% β-sheet: 5.66% Coil/Unstructured: 32.08% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 122 Family Scaffolds |
|---|---|---|
| PF01292 | Ni_hydr_CYTB | 31.97 |
| PF07859 | Abhydrolase_3 | 25.41 |
| PF06966 | DUF1295 | 24.59 |
| PF00033 | Cytochrome_B | 4.10 |
| PF03403 | PAF-AH_p_II | 1.64 |
| PF00296 | Bac_luciferase | 1.64 |
| PF03065 | Glyco_hydro_57 | 1.64 |
| PF01212 | Beta_elim_lyase | 0.82 |
| PF02274 | ADI | 0.82 |
| PF01035 | DNA_binding_1 | 0.82 |
| COG ID | Name | Functional Category | % Frequency in 122 Family Scaffolds |
|---|---|---|---|
| COG1969 | Ni,Fe-hydrogenase I cytochrome b subunit | Energy production and conversion [C] | 31.97 |
| COG2864 | Cytochrome b subunit of formate dehydrogenase | Energy production and conversion [C] | 31.97 |
| COG4117 | Thiosulfate reductase cytochrome b subunit | Inorganic ion transport and metabolism [P] | 31.97 |
| COG3038 | Cytochrome b561 | Energy production and conversion [C] | 31.97 |
| COG3658 | Cytochrome b subunit of Ni2+-dependent hydrogenase | Energy production and conversion [C] | 31.97 |
| COG0657 | Acetyl esterase/lipase | Lipid transport and metabolism [I] | 25.41 |
| COG2020 | Protein-S-isoprenylcysteine O-methyltransferase Ste14 | Posttranslational modification, protein turnover, chaperones [O] | 24.59 |
| COG3752 | Steroid 5-alpha reductase family enzyme | General function prediction only [R] | 24.59 |
| COG1290 | Cytochrome b subunit of the bc complex | Energy production and conversion [C] | 4.10 |
| COG4188 | Predicted dienelactone hydrolase | General function prediction only [R] | 1.64 |
| COG1167 | DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain | Transcription [K] | 1.64 |
| COG2141 | Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) | Coenzyme transport and metabolism [H] | 1.64 |
| COG3695 | Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain | Transcription [K] | 0.82 |
| COG3033 | Tryptophanase | Amino acid transport and metabolism [E] | 0.82 |
| COG2873 | O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent | Amino acid transport and metabolism [E] | 0.82 |
| COG4874 | Uncharacterized conserved protein | Function unknown [S] | 0.82 |
| COG2235 | Arginine deiminase | Amino acid transport and metabolism [E] | 0.82 |
| COG0075 | Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG | Amino acid transport and metabolism [E] | 0.82 |
| COG4992 | Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase | Amino acid transport and metabolism [E] | 0.82 |
| COG2008 | Threonine aldolase | Amino acid transport and metabolism [E] | 0.82 |
| COG1982 | Arginine/lysine/ornithine decarboxylase | Amino acid transport and metabolism [E] | 0.82 |
| COG1921 | Seryl-tRNA(Sec) selenium transferase | Translation, ribosomal structure and biogenesis [J] | 0.82 |
| COG1834 | N-Dimethylarginine dimethylaminohydrolase | Amino acid transport and metabolism [E] | 0.82 |
| COG1104 | Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family | Amino acid transport and metabolism [E] | 0.82 |
| COG1003 | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain | Amino acid transport and metabolism [E] | 0.82 |
| COG0626 | Cystathionine beta-lyase/cystathionine gamma-synthase | Amino acid transport and metabolism [E] | 0.82 |
| COG0520 | Selenocysteine lyase/Cysteine desulfurase | Amino acid transport and metabolism [E] | 0.82 |
| COG0436 | Aspartate/methionine/tyrosine aminotransferase | Amino acid transport and metabolism [E] | 0.82 |
| COG0399 | dTDP-4-amino-4,6-dideoxygalactose transaminase | Cell wall/membrane/envelope biogenesis [M] | 0.82 |
| COG0350 | DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) | Replication, recombination and repair [L] | 0.82 |
| COG0156 | 7-keto-8-aminopelargonate synthetase or related enzyme | Coenzyme transport and metabolism [H] | 0.82 |
| COG0112 | Glycine/serine hydroxymethyltransferase | Amino acid transport and metabolism [E] | 0.82 |
| COG0076 | Glutamate or tyrosine decarboxylase or a related PLP-dependent protein | Amino acid transport and metabolism [E] | 0.82 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 57.38 % |
| Unclassified | root | N/A | 42.62 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 18.85% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 18.03% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 14.75% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 11.48% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 9.84% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 5.74% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 4.92% |
| Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 4.92% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 4.10% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 1.64% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 1.64% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.82% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine | 0.82% |
| Marine Surface Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water | 0.82% |
| Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 0.82% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 0.82% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000117 | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 | Environmental | Open in IMG/M |
| 3300000265 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10 | Environmental | Open in IMG/M |
| 3300000928 | Marine plume microbial communities from the Columbia River - 25 PSU | Environmental | Open in IMG/M |
| 3300002524 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 | Environmental | Open in IMG/M |
| 3300002751 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 | Environmental | Open in IMG/M |
| 3300002753 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 | Environmental | Open in IMG/M |
| 3300002913 | Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV | Environmental | Open in IMG/M |
| 3300003247 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 | Environmental | Open in IMG/M |
| 3300003265 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 | Environmental | Open in IMG/M |
| 3300003269 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 | Environmental | Open in IMG/M |
| 3300003271 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 | Environmental | Open in IMG/M |
| 3300005837 | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 | Environmental | Open in IMG/M |
| 3300005942 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 | Environmental | Open in IMG/M |
| 3300007554 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 | Environmental | Open in IMG/M |
| 3300007557 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 | Environmental | Open in IMG/M |
| 3300007558 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 | Environmental | Open in IMG/M |
| 3300007863 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um | Environmental | Open in IMG/M |
| 3300007864 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um | Environmental | Open in IMG/M |
| 3300007956 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um | Environmental | Open in IMG/M |
| 3300007957 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um | Environmental | Open in IMG/M |
| 3300007962 | Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 | Environmental | Open in IMG/M |
| 3300007973 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um | Environmental | Open in IMG/M |
| 3300007992 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um | Environmental | Open in IMG/M |
| 3300009003 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 | Environmental | Open in IMG/M |
| 3300009054 | Estuarine microbial communities from the Columbia River estuary - metaG S.737 | Environmental | Open in IMG/M |
| 3300009058 | Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 | Environmental | Open in IMG/M |
| 3300009079 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 | Environmental | Open in IMG/M |
| 3300012953 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome | Environmental | Open in IMG/M |
| 3300017709 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27 | Environmental | Open in IMG/M |
| 3300017714 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 | Environmental | Open in IMG/M |
| 3300017728 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 | Environmental | Open in IMG/M |
| 3300017733 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23 | Environmental | Open in IMG/M |
| 3300017738 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12 | Environmental | Open in IMG/M |
| 3300017744 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23 | Environmental | Open in IMG/M |
| 3300017745 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15 | Environmental | Open in IMG/M |
| 3300017750 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29 | Environmental | Open in IMG/M |
| 3300017755 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 | Environmental | Open in IMG/M |
| 3300017758 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30 | Environmental | Open in IMG/M |
| 3300017760 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16 | Environmental | Open in IMG/M |
| 3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
| 3300017779 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16 | Environmental | Open in IMG/M |
| 3300017786 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 | Environmental | Open in IMG/M |
| 3300020238 | Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068) | Environmental | Open in IMG/M |
| 3300020310 | Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX556067-ERR598950) | Environmental | Open in IMG/M |
| 3300020318 | Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556107-ERR598973) | Environmental | Open in IMG/M |
| 3300020336 | Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860) | Environmental | Open in IMG/M |
| 3300020347 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) | Environmental | Open in IMG/M |
| 3300020349 | Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859) | Environmental | Open in IMG/M |
| 3300020352 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144) | Environmental | Open in IMG/M |
| 3300020385 | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) | Environmental | Open in IMG/M |
| 3300020413 | Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092) | Environmental | Open in IMG/M |
| 3300020421 | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007) | Environmental | Open in IMG/M |
| 3300020431 | Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983) | Environmental | Open in IMG/M |
| 3300020438 | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) | Environmental | Open in IMG/M |
| 3300020452 | Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078) | Environmental | Open in IMG/M |
| 3300020468 | Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993) | Environmental | Open in IMG/M |
| 3300020469 | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) | Environmental | Open in IMG/M |
| 3300020474 | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976) | Environmental | Open in IMG/M |
| 3300020475 | Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001) | Environmental | Open in IMG/M |
| 3300021084 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015 | Environmental | Open in IMG/M |
| 3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
| 3300021087 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 | Environmental | Open in IMG/M |
| 3300021378 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
| 3300022920 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG | Environmental | Open in IMG/M |
| 3300022931 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG | Environmental | Open in IMG/M |
| 3300024191 | Seawater microbial communities from Monterey Bay, California, United States - 45D | Environmental | Open in IMG/M |
| 3300024192 | Seawater microbial communities from Monterey Bay, California, United States - 47D | Environmental | Open in IMG/M |
| 3300024229 | Seawater microbial communities from Monterey Bay, California, United States - 54D | Environmental | Open in IMG/M |
| 3300024230 | Seawater microbial communities from Monterey Bay, California, United States - 48D | Environmental | Open in IMG/M |
| 3300024237 | Seawater microbial communities from Monterey Bay, California, United States - 65D | Environmental | Open in IMG/M |
| 3300024250 | Seawater microbial communities from Monterey Bay, California, United States - 58D_r | Environmental | Open in IMG/M |
| 3300024252 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MG | Environmental | Open in IMG/M |
| 3300024261 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG | Environmental | Open in IMG/M |
| 3300024297 | Seawater microbial communities from Monterey Bay, California, United States - 71D | Environmental | Open in IMG/M |
| 3300024322 | Seawater microbial communities from Monterey Bay, California, United States - 68D | Environmental | Open in IMG/M |
| 3300024327 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG | Environmental | Open in IMG/M |
| 3300024334 | Seawater microbial communities from Monterey Bay, California, United States - 89D | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300024417 | Seawater microbial communities from Monterey Bay, California, United States - 62D | Environmental | Open in IMG/M |
| 3300025658 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025688 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025719 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300026505 | Seawater microbial communities from Monterey Bay, California, United States - 59D | Environmental | Open in IMG/M |
| 3300027191 | Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes) | Environmental | Open in IMG/M |
| 3300027198 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes) | Environmental | Open in IMG/M |
| 3300027757 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) | Environmental | Open in IMG/M |
| 3300027827 | Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes) | Environmental | Open in IMG/M |
| 3300028008 | Seawater microbial communities from Monterey Bay, California, United States - 1D_r | Environmental | Open in IMG/M |
| 3300028111 | Seawater microbial communities from Monterey Bay, California, United States - 35D | Environmental | Open in IMG/M |
| 3300028135 | Seawater microbial communities from Monterey Bay, California, United States - 7D | Environmental | Open in IMG/M |
| 3300028280 | Seawater microbial communities from Monterey Bay, California, United States - 58D | Environmental | Open in IMG/M |
| 3300028297 | Seawater microbial communities from Monterey Bay, California, United States - 18D | Environmental | Open in IMG/M |
| 3300028335 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 14R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028391 | Seawater microbial communities from Monterey Bay, California, United States - 24D | Environmental | Open in IMG/M |
| 3300028397 | Seawater microbial communities from Monterey Bay, California, United States - 50D | Environmental | Open in IMG/M |
| 3300031766 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 | Environmental | Open in IMG/M |
| 3300031851 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| DelMOWin2010_101158232 | 3300000117 | Marine | MEILEYLAYAGILFGMIVGAFTIYWKDKKTYRNSLIILAVIAAGTGFLFLIDF* |
| LP_A_09_P04_10DRAFT_10170993 | 3300000265 | Marine | METLEYLALAAILFVSLVSLFTVDWKDKKTYRNVFITLAVIAAGTGFLFLIDS* |
| OpTDRAFT_101091633 | 3300000928 | Freshwater And Marine | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGILFLIDF* |
| JGI24927J35514_10032782 | 3300002524 | Marine | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF* |
| JGI24927J35514_10032842 | 3300002524 | Marine | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF* |
| JGI24930J39211_10012814 | 3300002751 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| JGI24930J39211_10013482 | 3300002751 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
| JGI24929J39151_10028531 | 3300002753 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF* |
| JGI26060J43896_101537301 | 3300002913 | Marine | MEKLEYLALAVILFGSLVSLFKLDRKDKKTYRNVFITLAGIAAGTGFLFLIDF* |
| JGI26116J46587_100022812 | 3300003247 | Marine | SMETLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGILFLIDF* |
| JGI26118J46590_10185611 | 3300003265 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLI |
| JGI26112J46591_100036414 | 3300003269 | Marine | METLEYLAYAGIXFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
| JGI26114J46594_10004241 | 3300003271 | Marine | SKSMETLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
| Ga0078893_101362965 | 3300005837 | Marine Surface Water | METLEYLAYAGILFGMLVSAFIIDWKNKKTYRNFLIVLAVIVAGTGFLFLIDF* |
| Ga0070742_100204592 | 3300005942 | Estuarine | METLKYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
| Ga0102820_10058745 | 3300007554 | Estuarine | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTGILFLIDF* |
| Ga0102821_10188051 | 3300007557 | Estuarine | TLKYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
| Ga0102821_10266421 | 3300007557 | Estuarine | METLKYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAA |
| Ga0102821_10350731 | 3300007557 | Estuarine | TLKYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0102822_10220531 | 3300007558 | Estuarine | SMETLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0105744_11249162 | 3300007863 | Estuary Water | METLEYLALAAILFGSFVSLLIVDWKDKKTYRNVFITLAVIAAGTGFLFLIDS* |
| Ga0105749_10373661 | 3300007864 | Estuary Water | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDFYSFFFFTPGKKRF |
| Ga0105741_10178281 | 3300007956 | Estuary Water | TLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0105742_10537241 | 3300007957 | Estuary Water | YLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTGILFLIDF* |
| Ga0102907_11094201 | 3300007962 | Estuarine | METLEYLAYAGILFGMLVSACTIDWKDKKTYRNSLIILTVIAA |
| Ga0105746_12427262 | 3300007973 | Estuary Water | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTG |
| Ga0105748_101366292 | 3300007992 | Estuary Water | METLEYLALAAILFGSLVSLFIVDWKDKKTYRNVFITLAVIAAGTGFLFLIDS* |
| Ga0102813_11110311 | 3300009003 | Estuarine | METLEYLALAAILFVSLVSLFTVDWKDKKTYRNVFITLAVIAAGTGFLFLINS* |
| Ga0102826_10061254 | 3300009054 | Estuarine | METLEYLAFAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0102854_10045261 | 3300009058 | Estuarine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYINSLIILTVIAAGTGILFLIDF* |
| Ga0102854_11540682 | 3300009058 | Estuarine | FGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0102814_101064073 | 3300009079 | Estuarine | LVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF* |
| Ga0163179_111562132 | 3300012953 | Seawater | METLEFLAYAGILFGMLVSAFTIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF* |
| Ga0181387_10155963 | 3300017709 | Seawater | METLEYLAYAGILFAMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0181412_10416731 | 3300017714 | Seawater | YLAYAGIFFGMLVSAFTIDWKDKKTYGNFLIILTVIAAGTGFLFLIDF |
| Ga0181412_11185142 | 3300017714 | Seawater | METLEYLAYEAILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0181419_10481242 | 3300017728 | Seawater | METLEYLAYAGILFGLFVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0181426_10578112 | 3300017733 | Seawater | AGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0181428_10396912 | 3300017738 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKVKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0181397_11849691 | 3300017744 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNSLIILTV |
| Ga0181427_10187293 | 3300017745 | Seawater | LAYAGILFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0181405_11052761 | 3300017750 | Seawater | YLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0181411_10588171 | 3300017755 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTRFLFLIDF |
| Ga0181411_11704771 | 3300017755 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF |
| Ga0181409_10639594 | 3300017758 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIIL |
| Ga0181408_10194451 | 3300017760 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0181408_10801931 | 3300017760 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0181394_11287112 | 3300017776 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0181394_12536011 | 3300017776 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAA |
| Ga0181395_11615541 | 3300017779 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0181424_100585233 | 3300017786 | Seawater | FGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0211492_10602802 | 3300020238 | Marine | METLEYLAYAGILFGMIVSAFIIDWKDKKTYRNIFIILGAIAAGTGFLFLID |
| Ga0211515_10919341 | 3300020310 | Marine | METLEYLAYAGILFAMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF |
| Ga0211491_10781822 | 3300020318 | Marine | METLEYLAYAGILFGMIVSAFIIDWKDKKTYRNIFIILGAIAAGTGFLFLIDF |
| Ga0211510_10131482 | 3300020336 | Marine | METLEYLAYAGILFAMLVSAFIIDWKDKKSYRNSLIILTVIAAGTGFLFLINF |
| Ga0211510_10719492 | 3300020336 | Marine | METLEYLAYAAILFGMLVSAFIIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
| Ga0211504_10541742 | 3300020347 | Marine | METFEYLAYAILFGGLLTAFTIDWKDKKTYRNFLI |
| Ga0211511_10105842 | 3300020349 | Marine | METLEYLAYAGILFGILVSAFTIDWKDKKTYRNSLIILAVIAAGTGFLFLIDF |
| Ga0211511_10426032 | 3300020349 | Marine | MLVSAFIIDWKDKKSYRNSLIILTVIAAGTGFLFLINF |
| Ga0211505_100113611 | 3300020352 | Marine | ILFGGLLTAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0211505_10266953 | 3300020352 | Marine | ILFGGLLTAFTIDWKDKKTYRNFLIILVLLASGVSLMSLIFGT |
| Ga0211677_100101576 | 3300020385 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
| Ga0211516_102417122 | 3300020413 | Marine | METLEFLAYAGILFGMLVSAFTIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
| Ga0211653_1000256210 | 3300020421 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNMFVILVVIASGVGLLFLTLGP |
| Ga0211554_104753791 | 3300020431 | Marine | MEILEYLAYAGILFGMIVGAFTIYWKDKKTYRNSLIILAVIAAGTGFLFLIDF |
| Ga0211576_100254443 | 3300020438 | Marine | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0211576_100416832 | 3300020438 | Marine | METLEYLALAVILFGSLVSLFKLDWKNKKTYRNVFITLAGIGAGTGFLFLIDF |
| Ga0211545_102094152 | 3300020452 | Marine | METLEYLAYAGILFGMLVSAFIIDWKDKKTYRNFLIILAVIVAGTGFLFLIDF |
| Ga0211545_104927421 | 3300020452 | Marine | METLEYLAYAGILFGMLVSAFIIDWKDKKTYRNIFIILGAIAAGTGFLFLIDF |
| Ga0211475_101288861 | 3300020468 | Marine | LFGMIVSAFIIDWKDKKTYRNIFIILGAIAAGTGFLFLIDF |
| Ga0211577_100899291 | 3300020469 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAA |
| Ga0211547_101654002 | 3300020474 | Marine | METLEYLAYAGILFAMLVSAFTIDWKDKKSYRNSLIILTVIAAGTGFLFLIDF |
| Ga0211547_102787782 | 3300020474 | Marine | LEYLAYAGILFGMLVSAFIIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
| Ga0211541_101545991 | 3300020475 | Marine | AGILFGMLVSAFTIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
| Ga0206678_100247926 | 3300021084 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0206677_100095533 | 3300021085 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0206683_100586842 | 3300021087 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0206683_100914851 | 3300021087 | Seawater | EYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0206683_104371122 | 3300021087 | Seawater | VSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0213861_103449222 | 3300021378 | Seawater | MLVGAFTIYWKDKKTYRNSLIILAVIAAGTGFLFLIDF |
| Ga0222717_101439461 | 3300021957 | Estuarine Water | ETLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0222717_104423251 | 3300021957 | Estuarine Water | ETLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0222717_106180672 | 3300021957 | Estuarine Water | METLEYLALAAILFGSFVSLLIVDWKDKKTYRNVFITLAVIAAGTGFLFLIDS |
| Ga0222718_1000784514 | 3300021958 | Estuarine Water | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTGFLF |
| Ga0222718_105184041 | 3300021958 | Estuarine Water | ETLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| (restricted) Ga0233426_100946892 | 3300022920 | Seawater | LEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| (restricted) Ga0233433_100780192 | 3300022931 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0228636_10262651 | 3300024191 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLI |
| Ga0228637_10212054 | 3300024192 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFFIILTVIAAGTGFLFLIDFLLSFFVFLKDKSYNKNM |
| Ga0233402_11149862 | 3300024229 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYGNFLIILTVIAA |
| Ga0228638_10466121 | 3300024230 | Seawater | LAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0228653_10156601 | 3300024237 | Seawater | LAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0228677_10184752 | 3300024250 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKKYRNFLIILTVIAAGTGFLFLIDF |
| (restricted) Ga0233435_11699912 | 3300024252 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGT |
| (restricted) Ga0233439_101134743 | 3300024261 | Seawater | YAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| (restricted) Ga0233439_101304232 | 3300024261 | Seawater | METLEYLALAAILFVSLVSLFTVDWKDKKTYRNVFITLAVIAAGTGFLFLINS |
| Ga0228658_10565002 | 3300024297 | Seawater | AYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0228658_11576972 | 3300024297 | Seawater | GILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0228656_10911832 | 3300024322 | Seawater | LEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| (restricted) Ga0233434_10888872 | 3300024327 | Seawater | SKSMETLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0228671_10703661 | 3300024334 | Seawater | VYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0244775_100556285 | 3300024346 | Estuarine | METLEYLALAAILFVSLVSLFTVDWKDKKTYRNVFITLAVIAAGTGFLFLIDS |
| Ga0228650_10041752 | 3300024417 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0209659_11474942 | 3300025658 | Marine | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIIL |
| Ga0209140_10380754 | 3300025688 | Marine | METLEYLAFAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0209252_10501844 | 3300025719 | Marine | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTG |
| Ga0228647_10692581 | 3300026505 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLII |
| Ga0208021_10399892 | 3300027191 | Estuarine | METLEYLAFAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFL |
| Ga0208163_10363772 | 3300027198 | Estuarine | METLKYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0208671_101353901 | 3300027757 | Estuarine | METLEYLALAAILFVSLVSLFTVDWKDKKTYRNVFITLAVI |
| Ga0209035_100033471 | 3300027827 | Marine | MEKLEYLALAVILFGSLVSLFKLDRKDKKTYRNVFITLAGIAAGTGFLFLIDF |
| Ga0228674_11474902 | 3300028008 | Seawater | METLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVVAAGTGFLFLIDF |
| Ga0228674_11808282 | 3300028008 | Seawater | METLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSL |
| Ga0233397_10773721 | 3300028111 | Seawater | GMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0228606_10316971 | 3300028135 | Seawater | TLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0228646_10282701 | 3300028280 | Seawater | YAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGFLFLIDF |
| Ga0228617_11400462 | 3300028297 | Seawater | YLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0247566_10722382 | 3300028335 | Seawater | LVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF |
| Ga0233394_10340792 | 3300028391 | Seawater | TLEYLAYAGILFGMLVSAFTIDWKNKKTYRNSLIILTVIAASTGFLFLIDF |
| Ga0228639_11553282 | 3300028397 | Seawater | LAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0315322_108557371 | 3300031766 | Seawater | ILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF |
| Ga0315320_106953152 | 3300031851 | Seawater | METLEYLAYAGILFGMVVSAFTIDWKDKKTYRNFLIILAVIAAGTGFLFLIDF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |