3300003247: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10

Overview

Basic Information

• IMG/M Taxon OID: 3300003247
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0089022 | Ga0008465
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66680935
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium HTCC2255	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
Not Available	11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Ulvibacter → unclassified Ulvibacter → Ulvibacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Jejuia → Jejuia pallidilutea	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F004631	Metagenome / Metatranscriptome	430	Y
F008782	Metagenome / Metatranscriptome	328	Y
F009300	Metagenome	320	Y
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F014804	Metagenome	260	Y
F016596	Metagenome / Metatranscriptome	246	Y
F022880	Metagenome	212	N
F034067	Metagenome / Metatranscriptome	175	Y
F035480	Metagenome / Metatranscriptome	172	Y
F035779	Metagenome / Metatranscriptome	171	Y
F038148	Metagenome / Metatranscriptome	166	Y
F038191	Metagenome / Metatranscriptome	166	Y
F045111	Metagenome / Metatranscriptome	153	Y
F046200	Metagenome / Metatranscriptome	151	Y
F047320	Metagenome / Metatranscriptome	150	Y
F054413	Metagenome / Metatranscriptome	140	N
F057667	Metagenome / Metatranscriptome	136	Y
F058116	Metagenome / Metatranscriptome	135	N
F059983	Metagenome / Metatranscriptome	133	Y
F063740	Metagenome / Metatranscriptome	129	N
F067697	Metagenome	125	N
F070883	Metagenome / Metatranscriptome	122	N
F071304	Metagenome / Metatranscriptome	122	Y
F077326	Metagenome / Metatranscriptome	117	N
F084730	Metagenome / Metatranscriptome	112	Y
F093867	Metagenome / Metatranscriptome	106	N
F095418	Metagenome / Metatranscriptome	105	N
F097398	Metagenome / Metatranscriptome	104	Y
F098686	Metagenome	103	Y
F099286	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26116J46587_1000176	All Organisms → cellular organisms → Bacteria	11045
JGI26116J46587_1000228	All Organisms → cellular organisms → Bacteria	9643
JGI26116J46587_1000968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium HTCC2255	3821
JGI26116J46587_1001178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3352
JGI26116J46587_1001890	All Organisms → Viruses → Predicted Viral	2551
JGI26116J46587_1002097	All Organisms → cellular organisms → Bacteria	2399
JGI26116J46587_1002324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	2263
JGI26116J46587_1003090	Not Available	1923
JGI26116J46587_1005841	All Organisms → cellular organisms → Bacteria	1304
JGI26116J46587_1006779	Not Available	1195
JGI26116J46587_1007311	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	1141
JGI26116J46587_1007900	Not Available	1090
JGI26116J46587_1007960	All Organisms → Viruses → Predicted Viral	1087
JGI26116J46587_1010528	All Organisms → Viruses	925
JGI26116J46587_1011160	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333	893
JGI26116J46587_1011528	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	877
JGI26116J46587_1011835	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Ulvibacter → unclassified Ulvibacter → Ulvibacter sp.	864
JGI26116J46587_1012041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia	856
JGI26116J46587_1012124	All Organisms → cellular organisms → Bacteria	853
JGI26116J46587_1013122	Not Available	816
JGI26116J46587_1015546	Not Available	741
JGI26116J46587_1016640	Not Available	712
JGI26116J46587_1016698	Not Available	710
JGI26116J46587_1016935	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Jejuia → Jejuia pallidilutea	705
JGI26116J46587_1017200	Not Available	699
JGI26116J46587_1018719	Not Available	666
JGI26116J46587_1019135	Not Available	658
JGI26116J46587_1022474	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	601
JGI26116J46587_1031079	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26116J46587_1000176	JGI26116J46587_100017614	F014804	MNEEWLDNILDGEPSGITDTQWLIIENNICNTSLPSRTIEDILERLNHLTQLEAEEIITTINENTHERDTRKQWERMFKEGMFEHRDL*
JGI26116J46587_1000176	JGI26116J46587_100017615	F016596	LINTFTKMTNQYSLDKIRKSRNEFEALLRIYGVSNTLLSKVMVVNYATSKKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK*
JGI26116J46587_1000176	JGI26116J46587_100017618	F009300	MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIDEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN*
JGI26116J46587_1000228	JGI26116J46587_100022812	F070883	SMETLEYLAYAGIFFGMLVSAFTIDWKDKKTYRNFLIILTVIAAGTGILFLIDF*
JGI26116J46587_1000968	JGI26116J46587_10009686	F059983	PCITQKARLYLPETTQLFTQLWASLQSGEADGGVVSHMXSRI*
JGI26116J46587_1001178	JGI26116J46587_10011784	F004631	MKYVKRYEAYLNEARRPGKPYHGSKILVFDLDDTLVISSAKIKVCNKKTGECYSLTPEEFNTYEKGEHEELNFDEFKSLEIMKAGKLIEYYLKIFKEAYKSKLAVGIVTARDDRKMIHKWLREHVGYRIDYELIFAVNDPIHKFKGNISDRKKAAFKELIEMGYNDMQFYDDDDANLKLVKSLEDEYDGINISTIKAIK*
JGI26116J46587_1001890	JGI26116J46587_10018905	F008782	MKKPIFRVFVSYEIKNKLKVTRRVNTGILDTFVLTSNINEIKNDKELIDRICYLNKKNPNKVEITITNVDVENQYGETTDRFEEE*
JGI26116J46587_1002097	JGI26116J46587_10020972	F057667	MGDLIVNHWQAILFALLIAARAIFSLVPSDNPAVKIFGWIDLIITALVGGDKRKNKKK*
JGI26116J46587_1002097	JGI26116J46587_10020974	F035480	MSVTVTGTSELFKNIDKLAKWSVKDSKALQDVGHRVGAVYANYIKANVKDFATDIKGSNKGEEFIVKKGQLRRSGGTWQPNKKSNVIMSGPRTKAIGKRGKTKKNADGWYAHIVEKGDFGPRFGGKHRTQNTGVFSRGMKATTNRSLKLQEILLKKNFAKYTKKL*
JGI26116J46587_1002324	JGI26116J46587_10023241	F098686	INSGECKMRETRWRLSRMQNSMYQIGEYLKNPSHFYKGQTLGHCCTTEDKAFWIKSIPAKVAELLGYDILPAIAALTNDCLSKRDTYATLAIANGMAKALLKDCDQQEARLKAGISPEYDEMKTGFSEVHGLLVEADRIAEDALQVLDYASKKSLIHARYPQLDENSAGNARNT*
JGI26116J46587_1003090	JGI26116J46587_10030902	F058116	MSDKKENKFFSEIKNQIIAGVGLVIAAGFGIFITNMEGWLSPKKEPTPVVVQDSIPAQPQIIINNIVEKKEAPKVIVKEKKEDEITW*
JGI26116J46587_1005841	JGI26116J46587_10058412	F099286	MMFQNLKINSHIVLVLCLFFFNCNQNNSCEFLDDNNQLLKPIVLKKFEDDVQRVFKNAEIEVAINAFLINEELDSISKNHYTANLISNYSNKSMSQYSSAFLEIYCDSIARIRSKPVSRFEFEELYNQSVD*
JGI26116J46587_1006779	JGI26116J46587_10067791	F093867	QTITSCGENSLPITNQKNVRLDSFESMRYNAFEEVKKDSLEIAKVI*
JGI26116J46587_1007311	JGI26116J46587_10073112	F063740	MKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGSGSRNLLVTTDGGEPQESNETFEWENLSSALNSSETTQNYAINGEAFTAVFTSNFSSLVLSEDGGDLQISMTRN*
JGI26116J46587_1007900	JGI26116J46587_10079002	F067697	ERLKIQEFRDCIIKHEAERAPLLEQQHKTVSRGAEDPHNVKPYDPEQARLEWRMKNNPFLIPGLNAPNDK*
JGI26116J46587_1007960	JGI26116J46587_10079602	F013089	MGQSKIKTIQPNGTYDSQNGIMYKFEIQLESGDSGEVSAKSEDRWSVGDEVEFEVTPSKWGDKMKLMKPGFTPNQSRGSNPDIQKRIDASWAIGHAINQESDPEKVLEAAEFLLSIRNTLISKL*
JGI26116J46587_1010528	JGI26116J46587_10105282	F011489	MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDSENPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGTKED*
JGI26116J46587_1011160	JGI26116J46587_10111602	F063740	MKKLAFTFVLLLSIACSKDSNSNSNNQVDLIIGSWQSSFTLTDENEDGQVVDIFANGIIIFNADGSGSRNLLVTTDGGEPQESNETFEWENLSSALNFSETTQNYAINGDAFTAVFTSNFSSLVLSEDGGDLQISMTRN*
JGI26116J46587_1011528	JGI26116J46587_10115282	F054413	MANLKKKYNRTKSELVRALNKSDRRTVVLSIKVVETSKIKEHLIYECLYLDNGKEKNVTIIAQDITNAMLKLEPYLGAGIPDTTTNLILGSERYPNVPLDPPV*
JGI26116J46587_1011835	JGI26116J46587_10118352	F077326	MKTLVKPTLVLLFFVALCALPSQVTAQLSANTATSFSITIEIDGNNTTLACNGGCDWKKITVQDNSTIVGENGVANNKKAADGSAFLFEVQKTNSGITLQQIQGTQWAAPIDITCSSKCTLVVNQFGLAQ*
JGI26116J46587_1012041	JGI26116J46587_10120411	F084730	LYSNCTVAILDSVEPVFTVGYFSYLNCITSGVYFHDPSNCIYGYGTPKRALIFF*
JGI26116J46587_1012124	JGI26116J46587_10121242	F038191	MTEKQLIELDFTRNDETAENSGAPNDFHYYTYDVGNFSLISPASDEVEEDGWYVEAFETPEIRFTNPTEVNILLTLLTNNYTEK*
JGI26116J46587_1013122	JGI26116J46587_10131222	F071304	MKKLKSRLLTYLFTDWVKTEEDVETLIMTRNMIEQRKNKIVGHTPVMGFRSHLNNDL*
JGI26116J46587_1014701	JGI26116J46587_10147011	F095418	LAEMKKDFDAFTNYLIILENMASTDQHAFVGDVEVDNARYTKISVYTNQPLGSSSRVLLTETGLYTYKAYGQNSSTNLNASDVSVVGLLEQGTLNVAGATGYEIPDINIPDNYIYYQ*
JGI26116J46587_1015546	JGI26116J46587_10155462	F047320	MSEEDFIYRHIESILDVPGDLSSGINGCILASAYDRTCRILKEHGATKPLIVDTIDDPECELTYLVENGQ*
JGI26116J46587_1016640	JGI26116J46587_10166401	F022880	MFFVTAQKRTDRLNICKGCEHFVDKTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLSKWEAEIKQADLEAIKTFLKTENQFRTNGQLAKLYSKVTGTNTQASQCSSCNRRMLAELQKLINETE*
JGI26116J46587_1016698	JGI26116J46587_10166982	F038148	VIRYLKNLILNKIIKDPLTTEKKEKKKYVISEKNPWLNPKDNFGKFERGKS*
JGI26116J46587_1016935	JGI26116J46587_10169351	F097398	VSTYKYISNVAYYNTNLLTLRVAISFFLKTQTTNQKVVAPLVVALYAIPAKACGFTAVFSGPKIDCNILGRYVYKSRNI*
JGI26116J46587_1017200	JGI26116J46587_10172002	F035779	MVKLFEDFLNEKNLQVQVRDHVIRYRLTYQYGKGGFITMASNSKELDKQIEIDNPMEIGKAIENSINAELKKLRQLFTVEEDHGYQGAGYAFYIVFDDLLKLLNK*
JGI26116J46587_1018719	JGI26116J46587_10187191	F046200	RETMYIKEETGWCKDTEELSKLRKILSRISMNNYRSVPNWRNAHPESEIIASRTYDFCYRMMQALLGDVEDEQIKLDNKIIKTMAKDLYINKIKKL*
JGI26116J46587_1019135	JGI26116J46587_10191351	F045111	SCGIDSDVEKIKKDLRVTNAEVDSLTNRLETKIISEQDMIRLIKEVPAWKTLRIEEISDKERISINALEEKED*
JGI26116J46587_1022474	JGI26116J46587_10224742	F001488	MARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDIFYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSINNKFMNQKFQNLESGEYITIKLAYGNNVSQEKK*
JGI26116J46587_1031079	JGI26116J46587_10310791	F034067	FGSKAINSIPKNDKKIKIHFFKLILSFKNKELINIANGIDNCAPIVIGANKVTALIDKYKNIFTPAPIQRENPIKGNIYFFLGIIILQNGNKHKKTKPILNAPKKIGFIDEFNPNLPSG*