3300002753: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35

Overview

Basic Information

• IMG/M Taxon OID: 3300002753
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0056857 | Ga0006238
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29602760
• Sequencing Scaffolds: 35
• Novel Protein Genes: 38
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
Not Available	17
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y
F002593	Metagenome / Metatranscriptome	545	Y
F003769	Metagenome / Metatranscriptome	469	Y
F008029	Metagenome / Metatranscriptome	340	N
F009922	Metagenome	311	Y
F010275	Metagenome / Metatranscriptome	306	Y
F010650	Metagenome / Metatranscriptome	301	Y
F014789	Metagenome / Metatranscriptome	260	Y
F016155	Metagenome / Metatranscriptome	249	Y
F016811	Metagenome / Metatranscriptome	244	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24929J39151_1002253	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339
JGI24929J39151_1002828	All Organisms → Viruses → Predicted Viral	1177
JGI24929J39151_1002853	Not Available	1171
JGI24929J39151_1003502	All Organisms → Viruses → Predicted Viral	1053
JGI24929J39151_1003655	Not Available	1029
JGI24929J39151_1004576	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	907
JGI24929J39151_1004581	All Organisms → cellular organisms → Bacteria	906
JGI24929J39151_1004984	Not Available	864
JGI24929J39151_1004993	Not Available	863
JGI24929J39151_1005554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	817

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24929J39151_1000071	JGI24929J39151_10000719	F020519	MPATSDIEVFNFEGNLEQSFYDFLLDNGIELATANDPKRLGDDYVGAQVSVSGLAEDEHMTEKPDGNLEYDHYNYTAEITIHTDRNENSVPGVAFSRYHRELVAKVRHLLSISRAAEVASLNDKIDYYWINRLVPSDATYNASDNSYDETVLTFEGDFSILTSAWPSA*
JGI24929J39151_1002253	JGI24929J39151_10022532	F025308	MISDDDFKFLLYESRGAFKILEIGTGTGKSTAALRLNNSEVYTIDKNDIFEYNGLNIHKFICTSKEYWEDWLHYDFDFVFIDGSIGKNDCEEILKRTKDSFKIVFHDYMPNEDKDPGKNKGWYNMKIFKETALLDYDIVEQLGGSHCGMXTLKKDK*
JGI24929J39151_1002828	JGI24929J39151_10028282	F058533	KVKLLEINNKDYGLYFDDLNNDGVTIGSTVQELNSEGIVEIKIDLKSSIYYRSVCGDDASDMDSNQNFQNGAFSEKELGFTPNIFTKNKDVGLRFAYLDKPIVDTNLKIPHIKLKGNDQSGQMITETERIYIDLGKQTFNGRLFPYNTAGWNLMFEDEDGDTTNTYDDIFADSEKILQSENPRIEFDMVVPTSELATLDFFLKTFSATIATSNGILVKSASGNVYNDYAYITIEGILQ*
JGI24929J39151_1002853	JGI24929J39151_10028531	F070883	METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF*
JGI24929J39151_1003006	JGI24929J39151_10030062	F067102	MDFKLEISRTNVANSYYDVDLFPKQQLEYDLDFYDSVDISKIKLPFYTKLRIPLTANNKSSNRFNFEPVTSATNQFPKDDFYFKITVYGSSNTEIAGILNVISFEYNSSESYIEVELKDYLSKYIAAIKDTKLGELYTDNYYTQRRTLNQFRANTASGGEAGIKNTNPDYTRPMSFPYIDFCNDVDGKFGYGARQFLEYGTGIDRTGIMPVFSVKGFLTYLASYISSTAFPLRVDSKLFELGAYASTPAFANFEAEKLHMVIPSQL
JGI24929J39151_1003502	JGI24929J39151_10035021	F002593	MSKLIYSKNGSQTTESIRNASPMIQAVWNQANKFGANIVRVRAYQDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVASNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSITD*
JGI24929J39151_1003655	JGI24929J39151_10036552	F025308	MISDEDFKFLLHESNGYKKALEIGTGTGKSSAALKLNCEVYSIDRNDIIEYNIDINRFICESKDYWNDYLHYDFDFVFIDGSIGKGDCEEILKRTKDSFKIVFHDYIPGEKDKNTNKGYYNMKALKECAIEQYNIIEKLGGSHCAMLTLKKDK*
JGI24929J39151_1004576	JGI24929J39151_10045762	F003769	MQQLKTVTVKTSNKVESVHMQTLYKVIENCFNSLQIMEEDCTSASYFINSANIFAQLQMLYCENETNDYVSIESVMEVFSKNITFYDESCLFTNVVENTAMQNINIENYICMHN*
JGI24929J39151_1004581	JGI24929J39151_10045811	F082707	MWYHKKFKLQYDKNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNL
JGI24929J39151_1004984	JGI24929J39151_10049842	F041142	MNYLATALIIILICLSTCXKAEADTAHINYVSSTSDQYTQLKSELEDLGYTVTGTNSGSVTLSDFSSKDLHINIAGDSNCGGSCKTAYETYIGNGGNVII
JGI24929J39151_1004993	JGI24929J39151_10049931	F078811	EIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24929J39151_1005554	JGI24929J39151_10055541	F071638	MSKNIDTKKFNSNEKALRYIKELGFNLKDRHCFKEDRSFLYTKKFSKQQVYLRSTYDFLNDNTIEMGTVWT
JGI24929J39151_1005940	JGI24929J39151_10059402	F053629	MKMHCKNCGIKFYPSDNNYVGYPFGTYYNKAPSHMRVFHSRGCWEEWTAKNITAYTLWLQGMGNNDTTNATNNQSI*
JGI24929J39151_1006221	JGI24929J39151_10062212	F008029	MNLVGLKELSELLEVPYEKLKVWKSRGRLPEPFQTISGTPVWDWDVTEEEFRSIDINENSGRPRKPKISIAGGLIEIDVQGSSKDKDENISIRLNGKTFVDVKAEPANSKNKSDRNLSIKVLGKKVVD
JGI24929J39151_1007231	JGI24929J39151_10072311	F010650	MNNMNQFLRIANARLRKVYPNKMQRKAWAANMWRRYVERQ
JGI24929J39151_1008247	JGI24929J39151_10082473	F092095	MRVTNFIIGFILLTLTTLVTNSFASIGEVTIHNGSAVIDRQDGDKDIEVEKQL
JGI24929J39151_1008251	JGI24929J39151_10082511	F092743	MDEYLIDVLFNGKKEQLKTFSASPLEALDSMINFEDVEAVYKITRQTDKKNWSFDNKNLSSLRELRGLINNESAIMQEFRRAH*
JGI24929J39151_1009026	JGI24929J39151_10090262	F002125	LVGEASLTSVDLFVSKDTAKLMFLRKRRQPIIEVQKVNK*
JGI24929J39151_1009117	JGI24929J39151_10091171	F028183	HLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPAALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNGLTKEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFI*
JGI24929J39151_1009247	JGI24929J39151_10092472	F076078	MRLKFETLLDVQDYYGSSDFQVEARYDKFDGEEYIMFRFGYWNELYYEDKFYAIFDKLGYKVEKQEIEDEDTGWNYSYNIKNK*
JGI24929J39151_1009640	JGI24929J39151_10096402	F017320	YFIHIEDGASKKLKVISIIPAIIIILKIVPKPGFCLINIHKKSTDTLIKKVAAPIDKLVVLDIPSASTDHGEFPVVDKIKRPSPNPKITKPXIKKKDVDNFGLKFKDLSELQDTIGIFLILRNIF*
JGI24929J39151_1009878	JGI24929J39151_10098781	F016155	MILECEYCYSRIVIKPDEPIKINFCPHCGEPTDDSEELDFNE*
JGI24929J39151_1009962	JGI24929J39151_10099622	F023489	HIFEEFVEQXTTISRCDCGANATKIVSATRHILDGASGDFPGRHMKWVREHENAG*
JGI24929J39151_1010104	JGI24929J39151_10101043	F009922	MENTFDINSFDKERTEAPASFPQCRALGYKFAKKGEVMNWKLQKQIQGCMYALAKDQRLTFKKAHQLLQGKTL
JGI24929J39151_1010221	JGI24929J39151_10102212	F024091	MNKIQTALKGYMDQIQELMESHPRAHLEENSNIHYLMSKASVYFAHMDDENRDYYQFVQTAIED
JGI24929J39151_1010337	JGI24929J39151_10103373	F069358	MEDHKIRALKDHYKAQITWAASELTSYLEYPSAVGEHTFLETMDKLVQQIAENEDKMVVL
JGI24929J39151_1010437	JGI24929J39151_10104371	F073263	REYRDTTEGGPGSGPQKGGKKFSSSEIKKAYGILNDPRYKQGNYTGAAKAINKLAPGLADHPDVKNAMKRAXENLDLPATGDTTTSNASQEVEQVEDLKEYTGMSISKSVNSNDVATALKNLKKGAKLYVQGKSQGGQRTMGDVISVSGDTVKIKPTASNGPTSVNVKDITMMDTLKEDLDEAKFTPAQISALQ
JGI24929J39151_1010451	JGI24929J39151_10104512	F038865	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKEIFLVDNA
JGI24929J39151_1010722	JGI24929J39151_10107222	F002125	LVGEASLTSVDLFVSKDTAKLMFLRKRGQPIIEVQKVNK*
JGI24929J39151_1011198	JGI24929J39151_10111982	F010275	TIIENLRDNVHELWVLDSRPDLEDDCLQYCYENIHTPVPYAMIEFLSQHCSQAVSTQDLEHMAKGE*
JGI24929J39151_1011673	JGI24929J39151_10116731	F094094	MKDESDSNISNQTVVMPHIEDNIPLPKNAREALPEMSPDEELTMRAHTIKVISDIQDEAIEPSDDEMETAETIAKEMMKNPELKPEFGNYPNETIAYLAGLVNQTSHMVAKDLAEIKLSVLNGLLQEAAMAKSPRERISAWKAVGEIDG
JGI24929J39151_1011738	JGI24929J39151_10117381	F014789	MDTIKMLETLKKDYLGMGYQVEFDKYVLEGIAEGLTITEKMNFVSWDDACKWAATVTESLKVPFVILEMRG
JGI24929J39151_1011809	JGI24929J39151_10118091	F086155	MLNQLSFQKFKKTLVELKEDSPKETAEFKKLSPAERQAVKDVFTLLGNTKGEII
JGI24929J39151_1011892	JGI24929J39151_10118921	F047902	SNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPANDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWY
JGI24929J39151_1013146	JGI24929J39151_10131461	F016811	MQNNEESDGQVIYDLGIRLTWKKKRGNGYTNMYFGTKDRPFQFVTRAKSIDHINRNPIMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYIKEFGE*
JGI24929J39151_1013252	JGI24929J39151_10132521	F019231	MTYKVNILRADNSPAEMHSFEKKPTYDEIKALLNHRVFDIVDGRYVDHNSGASVKVEIWCDDEGLMVNNPQRNHRASMLRWNHFKRMEKQLTDDWEDWAHIYGDAIFVFKENDRVKQNG*
JGI24929J39151_1013752	JGI24929J39151_10137522	F034067	KYKNIFTPAPIQRENPIKGNIYFFLGIIILQNGNKHKKTKPILNAPKKIGIIILQNGNKHKKTKPILNAPKKIGFIEEFNPNLPSG*
JGI24929J39151_1013821	JGI24929J39151_10138211	F045799	MKNLFLVLSFILISVSTYSQNDFSGWWQSKTSKYITMIYAGSYGVSAVVNYSPSTDNTIHEEIIKRNKKTFVTRLFNPANGYFVKVKYKLKDKNNLICKFSGDLNKTIHLTRYEVNLKDKLKK*