3300002751: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35

Overview

Basic Information

• IMG/M Taxon OID: 3300002751
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0056858 | Ga0006239
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29815965
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Methylophilales phage Venkman EXVC282S	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F002964	Metagenome / Metatranscriptome	517	Y
F004055	Metagenome / Metatranscriptome	455	Y
F006242	Metagenome / Metatranscriptome	378	Y
F007054	Metagenome / Metatranscriptome	359	Y
F008029	Metagenome / Metatranscriptome	340	N
F011338	Metagenome / Metatranscriptome	292	N
F014372	Metagenome / Metatranscriptome	263	Y
F025308	Metagenome	202	N
F026278	Metagenome / Metatranscriptome	198	Y
F031776	Metagenome	181	Y
F033503	Metagenome / Metatranscriptome	177	Y
F041818	Metagenome / Metatranscriptome	159	Y
F044730	Metagenome	154	Y
F044787	Metagenome / Metatranscriptome	154	N
F048918	Metagenome / Metatranscriptome	147	N
F054876	Metagenome / Metatranscriptome	139	N
F060599	Metagenome	132	N
F070576	Metagenome / Metatranscriptome	123	Y
F070883	Metagenome / Metatranscriptome	122	N
F078711	Metagenome / Metatranscriptome	116	N
F106105	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24930J39211_1000006	Not Available	32517
JGI24930J39211_1000286	All Organisms → cellular organisms → Bacteria	5475
JGI24930J39211_1000681	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3148
JGI24930J39211_1001281	All Organisms → cellular organisms → Bacteria	2059
JGI24930J39211_1001348	Not Available	1996
JGI24930J39211_1001357	All Organisms → cellular organisms → Bacteria	1988
JGI24930J39211_1003737	All Organisms → Viruses → Predicted Viral	1042
JGI24930J39211_1004740	All Organisms → cellular organisms → Bacteria	909
JGI24930J39211_1005031	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	879
JGI24930J39211_1005780	Not Available	812
JGI24930J39211_1007063	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	721
JGI24930J39211_1007483	Not Available	698
JGI24930J39211_1007513	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	697
JGI24930J39211_1008356	All Organisms → cellular organisms → Bacteria	657
JGI24930J39211_1008379	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Methylophilales phage Venkman EXVC282S	656
JGI24930J39211_1009793	All Organisms → cellular organisms → Bacteria	601
JGI24930J39211_1010541	Not Available	575
JGI24930J39211_1011392	Not Available	549
JGI24930J39211_1012373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	524
JGI24930J39211_1012836	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24930J39211_1000006	JGI24930J39211_100000630	F054876	MENSISLGLLHGLVYGIVPAAPWFVALKRYLLEGKERGQLAVAGTIAGQVSLLALTFFGWNQVLWIWYYFEPALIILGTMAVGRCALDCWVEQTSSLQTEPVPLANKKEGFYYFLVNFGLMFCNPAHLEGSQTLFSSIPGNRYFYLIAFTITYSGIILAFWATLGYRIFGKAYAGLGPQQTLTRYRIRRVAVGMVAALFIQFANCTPEALVVYHFDSLFTYTPFEQFKHHKTRGYIWEPVTNGSIGFSRQSTRTTNKQGILMDQEEKADITHKSMWNNQVRYDECNQTRERELDNDEWNEEASFHEFGGVNQATLHARLVPFNLYMVPKWERQENKDFVLTLRKIRDEMDEKLLSSGNSYAQNASLPFSDEWDVELDYIINPSALAEKAESKGAYKDMQKFIRSTKWTSNHLHLGNGFDTEASYAKLHKLPAEVRLPWHYPAVKPLETKFLPPASRQTPEEIESLNQQIQANAEFLANEPDRIQPDIYRRLSEYRMSRKTTPRPFDAEREARLKAESEFRRNTYSIPEEMRTK*
JGI24930J39211_1000286	JGI24930J39211_10002863	F060599	MIMEWDVIISKSIEDQNEDLGIFNWNFKSSNAHLGLNTLVSEKVKDREWALRVNSSLLHGIEDSSEVWAQEIFLIPKKNERKSYSGKTKVFCSKSLQTIGDQIGLIELVNDEIKEGIWGIKHNPLCFNTHNREPCWHIRLYKISNVEEE*
JGI24930J39211_1000681	JGI24930J39211_10006811	F031776	MFKKIFQFRYKMDKIKTELQMYDRTPDYNVKHAKGFNPFRYISIQDRVNNDPEFELAYINKLVAEGWFKLEDNRSILKHEMKGRHFKYRLNGNGLSNAEKGTFRSGGIIIGRKEEADDYVMYKAYNGCLFPLQMNDVEEIYVKDPNVKIDGNRKERVVKSTVFFKEPEYETRFPVFLQSLLTGNNIVVHYAKDNYKRERFVASKKYAYALKTGDWGFE*
JGI24930J39211_1001281	JGI24930J39211_10012811	F008029	VWKSRGRLPEPFQTISGTPVWDWDVTEEEFRSIDINENSGRPRKPKISIAGGLIEIDVQGSSKDKDENISIRLNGKTFVDVKAEPANSKNKSDRNLSIKVLGKKVVDINTDDVIEVDGEDTNSEDS*
JGI24930J39211_1001281	JGI24930J39211_10012814	F070883	METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAASTGFLFLIDF*
JGI24930J39211_1001348	JGI24930J39211_10013482	F070883	METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF*
JGI24930J39211_1001357	JGI24930J39211_10013572	F078711	MSSGNNVQYLGILEGATLIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFLMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDRLISRGQIFKQTIGKNHYFSLTSPLSSPLD*
JGI24930J39211_1003737	JGI24930J39211_10037372	F006242	MLIVHRRLKTEPDAEWDFHELSSDKFPGGFQRESDWAVRYKRRNDSPKYKHEYKVELRT*
JGI24930J39211_1004740	JGI24930J39211_10047402	F025308	MISDDDFKFLLYESRGAFKILEIGTGTGKSTAALRLNNSEVYTIDKNDIFEYNGLNIHKFICTSKEYWEDWLHYDFDFVFIDGSIGKNDCEEILKRTKDSFKIVFHDYMPNEDKDPGKNKGWYNMKIFKETALLDYDIVEQLGGSHCGMLTLKKDK*
JGI24930J39211_1005031	JGI24930J39211_10050312	F041818	MAVRKPLYVASGNLREMDTTMVGEIVDQAVYQYSLSPSVALSVVGSSGSLAA
JGI24930J39211_1005780	JGI24930J39211_10057802	F002964	MEKLIKTICGLFFILCLSSKSYADPKSLSGYPWDLQQMPIWCGPLEMVNNALKQEGYVEFEIAFGRIAALPDGDIAYAVMTYASKDIEGHIIRTMETPAQQEKCVLEVLFDYKVLETPTN
JGI24930J39211_1007063	JGI24930J39211_10070632	F007054	VGVEPQKPKTMSDKLKNFESAIEGVKFTKPQQGIVSILLRGWEIRIVNKHHMNGGTLMWKSPHSDYLEHAGKVYKAFFNVFYQIKKQKGIEIPTNLFCK*
JGI24930J39211_1007483	JGI24930J39211_10074832	F048918	YVTDSAGDTIDVALSNLIAAGETFDAGTASVTIKEIHYGCKVNKHVDVSRWDGATAHGHYYFVNSGSLEFTGFVDNVYSSRDIRIIGDGPFHCIMKLTKESGYS*
JGI24930J39211_1007513	JGI24930J39211_10075131	F033503	MKDTQXKKDIMNIAKAESADGITICCGTLFTKFNVSVHQQMADSLKLALQTFFDNRKKNDCVVKMSGPMGADEEYAYDFVPVVDFRLEGMGI*
JGI24930J39211_1007843	JGI24930J39211_10078431	F000200	MIKVFEFRCTNGHIFEEFVEKDTTISRCDCGANATKIVSATRHILDGASGDFPGRHMKWVREHENAGQTSKES*
JGI24930J39211_1008356	JGI24930J39211_10083561	F011338	NLVVNFRNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24930J39211_1008379	JGI24930J39211_10083791	F070576	MWSWHWFAGCHFGVEWYEDMKMDDSKNKKFFEYFIIDLGCIRIQKCTQVKNV*
JGI24930J39211_1009793	JGI24930J39211_10097932	F014372	MRHSIEDLIKRIEVMKEKAILLHRVRNEFSEISYKEYDKVVCQNLIDDIQAMALGIANDKEGDEIITEMDSWKQKG*
JGI24930J39211_1010541	JGI24930J39211_10105411	F106105	MGALPYDDKHENEKVLVDCDVCSKRFLLYQDRVPTCTNCLTDKTIKKNRNRQGTPIAFLFTED*
JGI24930J39211_1011392	JGI24930J39211_10113921	F026278	SQRINVRLVFFDIKNMGTSIAVFRKGVALTQIAAIGELIEDGKVIKVSKQAGTSKQISQSTLIIAADGRFNQQTASIALKRVCEKIIKDLLE*
JGI24930J39211_1011392	JGI24930J39211_10113922	F044787	MKKILLLLVSVMFTLSSYGQSSIDYSPVNTVTQVGDTLIMKFQYFKVDGNDLTLGQLDFEYNNKLLSYISHESQAPTGASFARNNWTGYKY
JGI24930J39211_1012373	JGI24930J39211_10123732	F004055	KIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGSLPMQFDYDIIENNIEADIDSQEXINHIGDILVVLIDEKLKEDKLNAKN*TNSFK*
JGI24930J39211_1012836	JGI24930J39211_10128362	F044730	MKYSXIILFVLLIGCTSTNKKMETHPTNNKNALEALDKFWDLLRPVRILTTGINK*